mRNA_L-elsbetiae_contig11071.966.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig11071.966.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE) HSP 1 Score: 355 bits (911), Expect = 7.340e-107 Identity = 231/406 (56.90%), Postives = 254/406 (62.56%), Query Frame = 1 Query: 1 RLVTLLERVPLALVDREKLLPLAEQSRFFRAAVILLKAAVTLGEQRGFTLEQFARIVSCYLQDSDNVFRSQVFGFIRQEIARAATAMATAAATGAAA---VSHVDANKSGEELVDVGGGGDAEVDL-ADKRDVVLSKLPQLMELNKAEAVFTVGDAFRGDHKAALKALAATTTLQFEYLDALLRPSQHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPAAASVLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSGTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTL-----------------------------------------------SARLAALRTALQGASLRDLAAEMAFSS 1065 RLVTLLERVPL+LVDR++LLPLAE+S FFRAAVILLKAAVTLGEQRGFTLEQFARIV CYLQDS++ FRSQVFGFIRQEIA AATA A ++ ++ H D + G GGG + +L ++KRDVVL KLPQLMEL+KAEAVFTVG+AF GDHKAAL AL+ATTTLQF+YLDALLRP Q RP++ LAAGLDDGDRSLHVRLLVRFRPYEVYPFLSS TGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTL SARLA+LRTALQ ASLR+LAAEMA S Sbjct: 1604 RLVTLLERVPLSLVDRDRLLPLAEKSGFFRAAVILLKAAVTLGEQRGFTLEQFARIVRCYLQDSEDAFRSQVFGFIRQEIAHAATAAAPSSGNASSKPRQAKHGDRSPPGTH----GGGEEGNKELLSEKRDVVLEKLPQLMELDKAEAVFTVGEAFGGDHKAALAALSATTTLQFDYLDALLRPPSEQQQGVSSSPSPPGSGGPDIARGRSGWGGGQQGVRHHHRDDRVDVGGVRGPGS-----------RPSSG--LAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSSTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLQNLGRAAGRGGGGXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSARLASLRTALQKASLRELAAEMALVS 1992
BLAST of mRNA_L-elsbetiae_contig11071.966.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI) HSP 1 Score: 283 bits (723), Expect = 9.760e-82 Identity = 219/323 (67.80%), Postives = 240/323 (74.30%), Query Frame = 1 Query: 1 RLVTLLERVPLALVDREKLLPLAEQSRFFRAAVILLKAAVTLGEQRGFTLEQFARIVSCYLQDSDNVFRSQVFGFIRQEIARAATAMATAAATGAAA---VSHVDANKSGEELVDVGGGGDAEVDL-ADKRDVVLSKLPQLMELNKAEAVFTVGDAFRGDHKAALKALAATTTLQFEYLDALLRPSQHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPAAASVLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSGTGYSLDDTLALCQERGVADATAYLLERKGDVPG 957 RLVTLLERVPL+LVDRE+LLPLAE+S FFRAAVILLKAAVTLGEQRGF LEQFARIV CYLQDS++ FRSQVFGFIRQEIARAATA A ++ ++ H D + G GGGG+ E +L ++KRDVVL KLPQLMEL+KAEAVFTVG+AF GDHKAAL AL+ATTTLQF+YLDALLRP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RP++ LAAGLDDGDRSLHVRLLVR+ P DDTLALCQERGVA AT YLLERKG PG Sbjct: 1433 RLVTLLERVPLSLVDRERLLPLAEKSGFFRAAVILLKAAVTLGEQRGFNLEQFARIVRCYLQDSEDAFRSQVFGFIRQEIARAATAAAPSSGNTSSKPRQAKHGDGSPPGTH----GGGGEGEAELLSEKRDVVLEKLPQLMELDKAEAVFTVGEAFGGDHKAALAALSATTTLQFDYLDALLRPPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDDRVGVGGVRGPGS----------RPSSG--LAAGLDDGDRSLHVRLLVRYSP---------------DDTLALCQERGVAHATPYLLERKGRRPG 1724
BLAST of mRNA_L-elsbetiae_contig11071.966.1 vs. uniprot
Match: B8CD47_THAPS (Vps8 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CD47_THAPS) HSP 1 Score: 93.2 bits (230), Expect = 7.520e-17 Identity = 90/340 (26.47%), Postives = 135/340 (39.71%), Query Frame = 1 Query: 7 VTLLERVPLALVDREKLLPLAEQSRFFRAAVILLKAAVTLGEQRGFTLEQFARIVSCYLQDSDNVFRSQVFGFIRQEIARAATAMATAAATGAAAVSHVDANKSGEELVDVGGGGDAEVDLADKRDVVLSKLPQLMELNKAEAVFTVGDAFRGDHKAALKALAATTTLQFEY--LDALLRPSQHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPAAASVLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSGTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLSARLAALRTALQ 1020 + LL +P + +++L E+++ RAA+ L KA F R + CYL+D D+VF+ VF + R+E S + D G A + R+V+L +LP+L+EL+ + VG+ F D L +L + + EY L A++ AA L A L + ++ L+ RF P VY +LS+ Y LDD L LCQ+R + DA+AYLLER GDV GAL L L+TL +R+ L++ LQ Sbjct: 354 LALLHALPRTSYELDEVLYTIEKAQLVRAALFLHKAGY-----------YFNRAIDCYLKDRDDVFKKGVFEYARKECI-----------------------SSSSDYEDGGANSSALL-----RNVLLRRLPELIELDAVQTAHLVGEIFVEDIDMILSSLRDIDSGRVEYGFLHAIISDLSKVDA--------------------------------------------------------------VAAQELGANLTINHQHAYLSLMARFEPDMVYQYLSTNHNYRLDDALKLCQDRRITDASAYLLERMGDVSGALQLMLQTLDSRMITLKSILQ 592
BLAST of mRNA_L-elsbetiae_contig11071.966.1 vs. uniprot
Match: A0A7S2PNM9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PNM9_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 7.640e-12 Identity = 42/86 (48.84%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 751 AASVLAAGLDDGDRSLHVRLLVRFRPYEVYPFLSSGTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLSARLAALR 1008 A+ L A L ++ L+ F+P VY +LS+ Y L D L LCQ+R +ADA+AYLLER GDV GAL L L+TL RL LR Sbjct: 897 ASQELLANLTSNHHHKYLTLMANFQPDRVYQYLSTNQSYRLKDALELCQKRKIADASAYLLERMGDVSGALQLMLQTLDTRLVTLR 982
BLAST of mRNA_L-elsbetiae_contig11071.966.1 vs. uniprot
Match: A0A397EVL7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EVL7_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 2.100e-11 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 799 HVRLLVRFRPYEVYPFLSSGTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLSARLAALRTALQGASL 1032 ++RLL F P +V+P+L++ Y +D L LC+E + DA AYLLER GDV GAL+L L +L ++ LR AL+G +L Sbjct: 152 YIRLLCEFNPLQVFPYLAAHQAYRVDSCLKLCKEYNITDAEAYLLERTGDVTGALSLILTSLEKKIGLLRPALRGFNL 229
BLAST of mRNA_L-elsbetiae_contig11071.966.1 vs. uniprot
Match: A0A418DMG7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DMG7_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 3.940e-11 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 799 HVRLLVRFRPYEVYPFLSSGTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLSARLAALRTALQGASL 1032 ++RLL F P +V+P+L++ Y +D L LC+E + DA AYLLER GDV GAL+L L +L ++ LR AL+G +L Sbjct: 229 YIRLLCEFNPLQVFPYLAAHQAYRVDSCLKLCKEYSITDAEAYLLERTGDVTGALSLILTSLEKKIGLLRPALRGFNL 306
BLAST of mRNA_L-elsbetiae_contig11071.966.1 vs. uniprot
Match: A0A418F871_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F871_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 6.300e-11 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 799 HVRLLVRFRPYEVYPFLSSGTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLSARLAALRTALQGASL 1032 ++RLL F P +V+P+L++ Y +D L LC+E + DA AYLLER GDV GAL+L L +L ++ LR AL+G +L Sbjct: 210 YIRLLCEFNPLQVFPYLAAHQAYRVDSCLKLCKEYSITDAEAYLLERTGDVTGALSLILTSLEKKIGLLRPALRGFNL 287
BLAST of mRNA_L-elsbetiae_contig11071.966.1 vs. uniprot
Match: A0A425D627_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D627_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 7.870e-11 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 799 HVRLLVRFRPYEVYPFLSSGTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLSARLAALRTALQGASL 1032 ++RLL F P +V+P+L++ Y +D L LC+E + DA AYLLER GDV GAL+L L +L ++ LR AL+G +L Sbjct: 229 YIRLLCEFNPLQVFPYLAAHQAYRVDSCLKLCKEYNITDAEAYLLERTGDVTGALSLILTSLEKKIGLLRPALRGFNL 306
BLAST of mRNA_L-elsbetiae_contig11071.966.1 vs. uniprot
Match: A0A662WX84_9STRA (Chromo domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WX84_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 8.330e-11 Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 1 Query: 802 VRLLVRFRPYEVYPFLSSGTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLSARLAALRTALQG 1023 VRLL F P V+PFL S Y +D L LC+E G+ DA AYLLER GDV GAL L L++L +L L+ AL+G Sbjct: 1641 VRLLCEFEPVGVFPFLESHDSYKVDACLRLCKEFGITDAEAYLLERTGDVTGALTLILQSLEQKLKILKPALRG 1714
BLAST of mRNA_L-elsbetiae_contig11071.966.1 vs. uniprot
Match: A0A397D1D5_9STRA (Vps8 domain-containing protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D1D5_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 8.620e-11 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 799 HVRLLVRFRPYEVYPFLSSGTGYSLDDTLALCQERGVADATAYLLERKGDVPGALALALRTLSARLAALRTALQGASL 1032 ++RLL F P +V+P+L++ Y +D L LC+E + DA AYLLER GDV GAL+L L +L ++ LR AL+G +L Sbjct: 393 YIRLLCEFNPLQVFPYLAAHQAYRVDSCLKLCKEYNITDAEAYLLERTGDVTGALSLILTSLEKKIGLLRPALRGFNL 470 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11071.966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig11071.966.1 >prot_L-elsbetiae_contig11071.966.1 ID=prot_L-elsbetiae_contig11071.966.1|Name=mRNA_L-elsbetiae_contig11071.966.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=385bp RLVTLLERVPLALVDREKLLPLAEQSRFFRAAVILLKAAVTLGEQRGFTLback to top mRNA from alignment at L-elsbetiae_contig11071:2656..6376- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig11071.966.1 ID=mRNA_L-elsbetiae_contig11071.966.1|Name=mRNA_L-elsbetiae_contig11071.966.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3721bp|location=Sequence derived from alignment at L-elsbetiae_contig11071:2656..6376- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig11071:2656..6376- >mRNA_L-elsbetiae_contig11071.966.1 ID=mRNA_L-elsbetiae_contig11071.966.1|Name=mRNA_L-elsbetiae_contig11071.966.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2310bp|location=Sequence derived from alignment at L-elsbetiae_contig11071:2656..6376- (Laminarionema elsbetiae ELsaHSoW15)back to top |