mRNA_L-elsbetiae_contig1107.964.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1107.964.1
Unique NamemRNA_L-elsbetiae_contig1107.964.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1107.964.1 vs. uniprot
Match: D7FYB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB0_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.960e-12
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = -2 
Query:   81 PAGAAGPDAEMVLRRCWSDEKAAENQRRVDTLSKSLEASDIHDLQVLRRSLQRQAD 248
            PA     D EMV  RCW+DEKAAE +RR+  LSKSLEASDIHDLQVLR+SLQR+ D
Sbjct: 1597 PAAVDTADEEMV-DRCWNDEKAAETERRLAILSKSLEASDIHDLQVLRKSLQRELD 1651
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BLAST of mRNA_L-elsbetiae_contig1107.964.1 vs. uniprot
Match: A0A6H5KQR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR0_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.210e-11
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = -2 
Query:   75 PAGAAGPDAEMVLRRCWSDEKAAENQRRVDTLSKSLEASDIHDLQVLRRSLQRQADGA 248
            PA     D EMV  R W+DEKAAE +RR+  LSKSLEASDIHDLQ+LR+SLQR+ D A
Sbjct: 1363 PATTGTADEEMV-GRYWNDEKAAETERRLAILSKSLEASDIHDLQILRKSLQRELDDA 1419
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1107.964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYB0_ECTSI1.960e-1269.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQR0_9PHAE3.210e-1165.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1107contigL-elsbetiae_contig1107:4450..4751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815321.5173752-CDS-L-elsbetiae_contig1107:4449..47491622815321.5173752-CDS-L-elsbetiae_contig1107:4449..4749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1107 4450..4749 +
1691682837.2852085-CDS-L-elsbetiae_contig1107:4449..47491691682837.2852085-CDS-L-elsbetiae_contig1107:4449..4749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1107 4450..4749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1107.964.1prot_L-elsbetiae_contig1107.964.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1107 4450..4749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1107.964.1

>prot_L-elsbetiae_contig1107.964.1 ID=prot_L-elsbetiae_contig1107.964.1|Name=mRNA_L-elsbetiae_contig1107.964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
AKGPSWAGDDRSPRERPPLSLPPRAAPSAWRWRDLRRTCRSWMSLASRLF
ERVSTRRWFSAAFSSLQHRRRTISASGPAAPAGAACAPMPPEERGSPLAP
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mRNA from alignment at L-elsbetiae_contig1107:4450..4751+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1107.964.1 ID=mRNA_L-elsbetiae_contig1107.964.1|Name=mRNA_L-elsbetiae_contig1107.964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=302bp|location=Sequence derived from alignment at L-elsbetiae_contig1107:4450..4751+ (Laminarionema elsbetiae ELsaHSoW15)
GCGAAAGGGCCTAGCTGGGCTGGAGACGACCGCTCACCCCGGGAGCGACC
GCCCCTTAGCCTCCCCCCCCGTGCCGCGCCGTCCGCCTGGCGCTGGAGAG
ATCTCCGGAGGACCTGCAGGTCGTGGATGTCGCTGGCCTCGAGGCTCTTC
GAGAGGGTGTCCACCCGGCGCTGGTTCTCGGCAGCCTTCTCGTCGCTCCA
GCACCGGCGTAGAACCATCTCCGCATCCGGGCCCGCCGCTCCTGCCGGCG
CTGCCTGTGCTCCGATGCCCCCTGAGGAAAGGGGATCACCACTGGCGCCG
TG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1107:4450..4751+

>mRNA_L-elsbetiae_contig1107.964.1 ID=mRNA_L-elsbetiae_contig1107.964.1|Name=mRNA_L-elsbetiae_contig1107.964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig1107:4450..4751+ (Laminarionema elsbetiae ELsaHSoW15)
GCGAAAGGGCCTAGCTGGGCTGGAGACGACCGCTCACCCCGGGAGCGACC
GCCCCTTAGCCTCCCCCCCCGTGCCGCGCCGTCCGCCTGGCGCTGGAGAG
ATCTCCGGAGGACCTGCAGGTCGTGGATGTCGCTGGCCTCGAGGCTCTTC
GAGAGGGTGTCCACCCGGCGCTGGTTCTCGGCAGCCTTCTCGTCGCTCCA
GCACCGGCGTAGAACCATCTCCGCATCCGGGCCCGCCGCTCCTGCCGGCG
CTGCCTGTGCTCCGATGCCCCCTGAGGAAAGGGGATCACCACTGGCGCCG
GCGAAAGGGCCTAGCTGGGCTGGAGACGACCGCTCACCCCGGGAGCGACC
GCCCCTTAGCCTCCCCCCCCGTGCCGCGCCGTCCGCCTGGCGCTGGAGAG
ATCTCCGGAGGACCTGCAGGTCGTGGATGTCGCTGGCCTCGAGGCTCTTC
GAGAGGGTGTCCACCCGGCGCTGGTTCTCGGCAGCCTTCTCGTCGCTCCA
GCACCGGCGTAGAACCATCTCCGCATCCGGGCCCGCCGCTCCTGCCGGCG
CTGCCTGTGCTCCGATGCCCCCTGAGGAAAGGGGATCACCACTGGCGCCG
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