mRNA_L-elsbetiae_contig11063.961.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11063.961.1
Unique NamemRNA_L-elsbetiae_contig11063.961.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11063.961.1 vs. uniprot
Match: D7FJ89_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ89_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.420e-27
Identity = 58/92 (63.04%), Postives = 71/92 (77.17%), Query Frame = 2
Query:   65 QRLRSILRGSEDTIFDLVCSRTTLEQWAEWLQAPLEHAIVVGNANLLAKLQAAGARANAVHPAVRGGQEALVLELLRLGASPTEPDEDGDTP 340
            +RLR+IL G+E  IFDL+C+  ++EQWAEWL+ PLEHA+  G  +L+ +L  AGA   AVH AVR GQEA+V ELLRLGASP EPDE GDTP
Sbjct:   14 ERLRTILTGAEAAIFDLICAGASIEQWAEWLRTPLEHAVAAGKMDLVVQLAQAGAGGIAVHSAVRRGQEAVVAELLRLGASPGEPDESGDTP 105          
BLAST of mRNA_L-elsbetiae_contig11063.961.1 vs. uniprot
Match: D7FJ34_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ34_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.970e-27
Identity = 59/93 (63.44%), Postives = 72/93 (77.42%), Query Frame = 2
Query:   65 QRLRSILRGSEDTIFDLVCSRTTLEQWAEWLQAPLEHAIVVGNANLLAKLQAAGARANAVHPAVRGGQEALVLELLRLGASPTEPDEDGDTPL 343
            Q LR+IL GSE  IFDL+   T+++QWAEWL+ PLEHA+  G+ +L+ KL  AGA  +AVH AVR G EA+V ELLRLGASP+EPDE GDTPL
Sbjct:    6 QNLRTILSGSEAAIFDLIFGTTSIQQWAEWLRTPLEHAVAEGDMDLVVKLAQAGASRSAVHLAVRQGHEAVVAELLRLGASPSEPDESGDTPL 98          
BLAST of mRNA_L-elsbetiae_contig11063.961.1 vs. uniprot
Match: A0A6H5JW93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW93_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.280e-26
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 2
Query:   65 QRLRSILRGSEDTIFDLVCSRTTLEQWAEWLQAPLEHAIVVGNANLLAKLQAAGARANAVHPAVRGGQEALVLELLRLGASPTEPDEDGDTP 340
            +RLR+IL G+E  IFDL+C+  ++E WAEWL+ PLEHA+  G  +L+ +L  AGA   AVH AVR GQE +V ELLRLGASP EPDE GDTP
Sbjct:   14 ERLRTILTGAEAAIFDLICAGASIEPWAEWLRTPLEHAVAAGKTDLVVQLAQAGAGGIAVHSAVRRGQEVVVAELLRLGASPGEPDESGDTP 105          
BLAST of mRNA_L-elsbetiae_contig11063.961.1 vs. uniprot
Match: D7G751_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G751_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 9.860e-23
Identity = 54/88 (61.36%), Postives = 64/88 (72.73%), Query Frame = 2
Query:   74 RSILRGSEDTIFDLVCSRTTLEQWAEWLQAPLEHAIVVGNANLLAKLQAAGARANAVHPAVRGGQEALVLELLRLGASPTEPDEDGDT 337
            RS LRG+E TIFDLVC+ T   QWAEWL+ PLEHA  VGN +L+ KLQ AGA  +A+H A+R GQ+AL  ELLRLGA     D +GDT
Sbjct:   23 RSNLRGTEKTIFDLVCAGTNRRQWAEWLRTPLEHAAGVGNIDLVTKLQGAGAGGSALHLALRAGQDALAQELLRLGAPTKAKDNNGDT 110          
BLAST of mRNA_L-elsbetiae_contig11063.961.1 vs. uniprot
Match: A0A6H5JN84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN84_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.000e-21
Identity = 51/86 (59.30%), Postives = 63/86 (73.26%), Query Frame = 2
Query:   83 LRGSEDTIFDLVCSRTTLEQWAEWLQAPLEHAIVVGNANLLAKLQAAGARANAVHPAVRGGQEALVLELLRLGASPTEPDEDGDTP 340
            LRG+E+TIFDLVC+ T+  QWAEWL+ PLEHA   GN +L+ KLQ A A  +A+H A+R GQ+AL  ELLRLGA     D +GDTP
Sbjct:   26 LRGTEETIFDLVCAGTSKMQWAEWLRTPLEHAASAGNLDLVTKLQEAEAGGSALHLALRAGQDALARELLRLGAPTKAIDNNGDTP 111          
BLAST of mRNA_L-elsbetiae_contig11063.961.1 vs. uniprot
Match: D7FJ91_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ91_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 7.590e-9
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 2
Query:  197 NLLAKLQAAGARANAVHPAVRGGQEALVLELLRLGASPTEPDEDGDTP 340
            +L+ +L  AGA   AVH AVR GQEA+V ELLRLGASP EPDE GDTP
Sbjct:    2 DLVVQLAQAGAGGVAVHSAVRRGQEAVVAELLRLGASPGEPDESGDTP 49          
BLAST of mRNA_L-elsbetiae_contig11063.961.1 vs. uniprot
Match: A0A6H5JN15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN15_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.220e-8
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 2
Query:   74 RSILRGSEDTIFDLVCSRTTLEQWAEWLQAPLEHAIVVGNANLLAK 211
            R+ LRG+E+TIFDLVC+ T   QWAEWL+ PLEHA   GN +L+ K
Sbjct:   24 RAKLRGTEETIFDLVCAGTNRMQWAEWLRTPLEHAAGAGNLDLVTK 69          
BLAST of mRNA_L-elsbetiae_contig11063.961.1 vs. uniprot
Match: D8LH19_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH19_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.600e-7
Identity = 37/93 (39.78%), Postives = 48/93 (51.61%), Query Frame = 2
Query:   56 AEFQRLRSILRGSEDTIFDLVCSRTTLEQWAEWLQAPLEHAIVVGNANLLAKLQAAGARANA----------VHPAVRGGQEALVLELLRLGA 304
            A F    + L G+E+ +F LV    T  QWAEWL+APLEHA+  GN +L + L  AGA   A          +  AV+GG    V  LL  G+
Sbjct:    2 ANFDERTAALGGTEEQLFKLVSRHATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDVAVQGGNSKTVSALLEAGS 94          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11063.961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FJ89_ECTSI1.420e-2763.04Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FJ34_ECTSI1.970e-2763.44Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
A0A6H5JW93_9PHAE2.280e-2660.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G751_ECTSI9.860e-2361.36Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
A0A6H5JN84_9PHAE4.000e-2159.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ91_ECTSI7.590e-968.75Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
A0A6H5JN15_9PHAE5.220e-860.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH19_ECTSI1.600e-739.78Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11063contigL-elsbetiae_contig11063:4583..5081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue9.4e-25
Seed eggNOG ortholog2880.D7FGP5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size499
Cds size498
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815321.421357-UTR-L-elsbetiae_contig11063:4582..45831622815321.421357-UTR-L-elsbetiae_contig11063:4582..4583Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11063 4583..4583 +
1691682837.2437515-UTR-L-elsbetiae_contig11063:4582..45831691682837.2437515-UTR-L-elsbetiae_contig11063:4582..4583Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11063 4583..4583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815321.43166-CDS-L-elsbetiae_contig11063:4583..50811622815321.43166-CDS-L-elsbetiae_contig11063:4583..5081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11063 4584..5081 +
1691682837.2607741-CDS-L-elsbetiae_contig11063:4583..50811691682837.2607741-CDS-L-elsbetiae_contig11063:4583..5081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11063 4584..5081 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11063.961.1prot_L-elsbetiae_contig11063.961.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11063 4584..5081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11063.961.1

>prot_L-elsbetiae_contig11063.961.1 ID=prot_L-elsbetiae_contig11063.961.1|Name=mRNA_L-elsbetiae_contig11063.961.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
MASTQTSASNGLPTSVPAAEFQRLRSILRGSEDTIFDLVCSRTTLEQWAE
WLQAPLEHAIVVGNANLLAKLQAAGARANAVHPAVRGGQEALVLELLRLG
ASPTEPDEDGDTPLHVAVRLGHGGIASLLLQKGAAVDALDGEGRSPLHLA
AGAESAALWTWCRGS*
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mRNA from alignment at L-elsbetiae_contig11063:4583..5081+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11063.961.1 ID=mRNA_L-elsbetiae_contig11063.961.1|Name=mRNA_L-elsbetiae_contig11063.961.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=499bp|location=Sequence derived from alignment at L-elsbetiae_contig11063:4583..5081+ (Laminarionema elsbetiae ELsaHSoW15)
CATGGCGAGCACACAGACGTCGGCTTCAAACGGCCTACCGACGAGTGTCC CAGCAGCAGAATTCCAACGCCTTCGGTCAATCCTCCGAGGTTCAGAGGAC ACCATCTTCGACCTCGTCTGCTCCAGGACCACGCTAGAGCAGTGGGCCGA GTGGCTTCAGGCTCCACTTGAGCATGCTATTGTCGTGGGTAATGCGAATC TCTTGGCGAAGCTGCAGGCAGCGGGGGCGAGGGCGAACGCCGTGCATCCG GCTGTGAGGGGCGGCCAAGAGGCCCTAGTCCTCGAGCTTCTTAGGCTGGG AGCATCCCCGACCGAGCCAGACGAGGACGGTGACACCCCACTTCATGTTG CTGTTCGCCTGGGCCATGGCGGTATCGCGTCCTTGCTGCTACAGAAGGGG GCTGCTGTGGACGCGCTTGACGGCGAGGGTCGCTCGCCGCTGCACCTGGC AGCAGGCGCAGAGAGTGCTGCTCTCTGGACTTGGTGCAGAGGCTCGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11063:4583..5081+

>mRNA_L-elsbetiae_contig11063.961.1 ID=mRNA_L-elsbetiae_contig11063.961.1|Name=mRNA_L-elsbetiae_contig11063.961.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig11063:4583..5081+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAGCACACAGACGTCGGCTTCAAACGGCCTACCGACGAGTGTCCC
AGCAGCAGAATTCCAACGCCTTCGGTCAATCCTCCGAGGTTCAGAGGACA
CCATCTTCGACCTCGTCTGCTCCAGGACCACGCTAGAGCAGTGGGCCGAG
TGGCTTCAGGCTCCACTTGAGCATGCTATTGTCGTGGGTAATGCGAATCT
CTTGGCGAAGCTGCAGGCAGCGGGGGCGAGGGCGAACGCCGTGCATCCGG
CTGTGAGGGGCGGCCAAGAGGCCCTAGTCCTCGAGCTTCTTAGGCTGGGA
GCATCCCCGACCGAGCCAGACGAGGACGGTGACACCCCACTTCATGTTGC
TGTTCGCCTGGGCCATGGCGGTATCGCGTCCTTGCTGCTACAGAAGGGGG
CTGCTGTGGACGCGCTTGACGGCGAGGGTCGCTCGCCGCTGCACCTGGCA
GCAGGCGCAGAGAGTGCTGCTCTCTGGACTTGGTGCAGAGGCTCGTGAAT
GGCGAGCACACAGACGTCGGCTTCAAACGGCCTACCGACGAGTGTCCCAG
CAGCAGAATTCCAACGCCTTCGGTCAATCCTCCGAGGTTCAGAGGACACC
ATCTTCGACCTCGTCTGCTCCAGGACCACGCTAGAGCAGTGGGCCGAGTG
GCTTCAGGCTCCACTTGAGCATGCTATTGTCGTGGGTAATGCGAATCTCT
TGGCGAAGCTGCAGGCAGCGGGGGCGAGGGCGAACGCCGTGCATCCGGCT
GTGAGGGGCGGCCAAGAGGCCCTAGTCCTCGAGCTTCTTAGGCTGGGAGC
ATCCCCGACCGAGCCAGACGAGGACGGTGACACCCCACTTCATGTTGCTG
TTCGCCTGGGCCATGGCGGTATCGCGTCCTTGCTGCTACAGAAGGGGGCT
GCTGTGGACGCGCTTGACGGCGAGGGTCGCTCGCCGCTGCACCTGGCAGC
AGGCGCAGAGAGTGCTGCTCTCTGGACTTGGTGCAGAGGCTCGTGA
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