mRNA_L-elsbetiae_contig11063.960.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11063.960.1
Unique NamemRNA_L-elsbetiae_contig11063.960.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11063.960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11063contigL-elsbetiae_contig11063:3821..4307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size489
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815321.379728-CDS-L-elsbetiae_contig11063:3820..41891622815321.379728-CDS-L-elsbetiae_contig11063:3820..4189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11063 3821..4189 +
1691682837.2190812-CDS-L-elsbetiae_contig11063:3820..41891691682837.2190812-CDS-L-elsbetiae_contig11063:3820..4189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11063 3821..4189 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815321.3912802-UTR-L-elsbetiae_contig11063:4189..43071622815321.3912802-UTR-L-elsbetiae_contig11063:4189..4307Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11063 4190..4307 +
1691682837.2319937-UTR-L-elsbetiae_contig11063:4189..43071691682837.2319937-UTR-L-elsbetiae_contig11063:4189..4307Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11063 4190..4307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11063.960.1prot_L-elsbetiae_contig11063.960.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11063 3821..4189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11063.960.1

>prot_L-elsbetiae_contig11063.960.1 ID=prot_L-elsbetiae_contig11063.960.1|Name=mRNA_L-elsbetiae_contig11063.960.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
PLAPNTTGTYTGTTAALLFFVPVGLGGVDSSPRRWHISRLPGKQPIGVRL
TLPQVGLKLHPVPARVSSGRAVPQHLAGAVGSVTPVFLLEPASLVASSSA
LTRARGRRRGGRFASSSARKPA*
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mRNA from alignment at L-elsbetiae_contig11063:3821..4307+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11063.960.1 ID=mRNA_L-elsbetiae_contig11063.960.1|Name=mRNA_L-elsbetiae_contig11063.960.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=487bp|location=Sequence derived from alignment at L-elsbetiae_contig11063:3821..4307+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCTCGCCCCTAACACCACCGGCACCTATACCGGCACCACTGCCGCTCT
CTTGTTCTTCGTCCCCGTCGGTCTCGGTGGTGTGGACTCGAGTCCAAGAA
GGTGGCACATCTCTCGCCTTCCAGGTAAACAGCCCATCGGGGTAAGGCTC
ACCCTTCCCCAAGTAGGCTTGAAGCTGCACCCTGTTCCCGCACGCGTTTC
CAGCGGGAGGGCAGTACCACAGCACTTGGCCGGTGCTGTCGGTAGTGTAA
CTCCAGTGTTCCTTCTCGAGCCTGCATCTCTGGTCGCCTCCTCGTCGGCT
CTGACGCGGGCCCGAGGAAGGCGTCGAGGAGGGCGATTCGCCTCCTCCTC
GGCTCGGAAACCCGCCTGAGGAGAGCGACTGCATAACTTCCCCAGATGTT
CGGTTTACACTGGTTGGACAGAATATTCTGGTGTACAGGGCTCTCGCCAC
CCAGATATAATGGGCTTATTTTGTTGTTTCTGCTCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11063:3821..4307+

>mRNA_L-elsbetiae_contig11063.960.1 ID=mRNA_L-elsbetiae_contig11063.960.1|Name=mRNA_L-elsbetiae_contig11063.960.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig11063:3821..4307+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCTCGCCCCTAACACCACCGGCACCTATACCGGCACCACTGCCGCTCT
CTTGTTCTTCGTCCCCGTCGGTCTCGGTGGTGTGGACTCGAGTCCAAGAA
GGTGGCACATCTCTCGCCTTCCAGGTAAACAGCCCATCGGGGTAAGGCTC
ACCCTTCCCCAAGTAGGCTTGAAGCTGCACCCTGTTCCCGCACGCGTTTC
CAGCGGGAGGGCAGTACCACAGCACTTGGCCGGTGCTGTCGGTAGTGTAA
CTCCAGTGTTCCTTCTCGAGCCTGCATCTCTGGTCGCCTCCTCGTCGGCT
CTGACGCGGGCCCGAGGAAGGCGTCGAGGAGGGCGATTCGCCTCCTCCTC
GGCTCGGAAACCCGCCTGACCTCTCGCCCCTAACACCACCGGCACCTATA
CCGGCACCACTGCCGCTCTCTTGTTCTTCGTCCCCGTCGGTCTCGGTGGT
GTGGACTCGAGTCCAAGAAGGTGGCACATCTCTCGCCTTCCAGGTAAACA
GCCCATCGGGGTAAGGCTCACCCTTCCCCAAGTAGGCTTGAAGCTGCACC
CTGTTCCCGCACGCGTTTCCAGCGGGAGGGCAGTACCACAGCACTTGGCC
GGTGCTGTCGGTAGTGTAACTCCAGTGTTCCTTCTCGAGCCTGCATCTCT
GGTCGCCTCCTCGTCGGCTCTGACGCGGGCCCGAGGAAGGCGTCGAGGAG
GGCGATTCGCCTCCTCCTCGGCTCGGAAACCCGCCTGA
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