mRNA_L-elsbetiae_contig11062.958.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11062.958.1
Unique NamemRNA_L-elsbetiae_contig11062.958.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11062.958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11062contigL-elsbetiae_contig11062:4137..4561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815321.196302-UTR-L-elsbetiae_contig11062:4136..42491622815321.196302-UTR-L-elsbetiae_contig11062:4136..4249Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11062 4137..4249 +
1691682837.1548967-UTR-L-elsbetiae_contig11062:4136..42491691682837.1548967-UTR-L-elsbetiae_contig11062:4136..4249Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11062 4137..4249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815321.2094536-CDS-L-elsbetiae_contig11062:4249..45611622815321.2094536-CDS-L-elsbetiae_contig11062:4249..4561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11062 4250..4561 +
1691682837.1648986-CDS-L-elsbetiae_contig11062:4249..45611691682837.1648986-CDS-L-elsbetiae_contig11062:4249..4561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11062 4250..4561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11062.958.1prot_L-elsbetiae_contig11062.958.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11062 4250..4561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11062.958.1

>prot_L-elsbetiae_contig11062.958.1 ID=prot_L-elsbetiae_contig11062.958.1|Name=mRNA_L-elsbetiae_contig11062.958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MRCRPPGGGVQNNPTIPRIPRNPAKAPFLRPLLLPPAFCSLLLLLRQEEA
GVSRPRLPALPSPAVADEKLVQLSAAATWVAMSSSPRRPRIPATTEPLQV
GELE
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mRNA from alignment at L-elsbetiae_contig11062:4137..4561+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11062.958.1 ID=mRNA_L-elsbetiae_contig11062.958.1|Name=mRNA_L-elsbetiae_contig11062.958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=425bp|location=Sequence derived from alignment at L-elsbetiae_contig11062:4137..4561+ (Laminarionema elsbetiae ELsaHSoW15)
TGATGCCCATGATTCTTCTAGCTTCGGTCAGTTTGAGATCATAAATACCT
TGTAAAAAAGGAAAAGAGGCATAAGGGGGATCCGTTCTAGGATACCGACC
CCCCCTACCCGCCATGCGTTGCCGGCCCCCCGGAGGGGGCGTACAAAATA
ACCCAACAATACCCCGTATCCCACGAAACCCAGCAAAAGCACCCTTCCTG
CGCCCCCTCCTCTTGCCGCCTGCCTTTTGCTCGCTACTGCTCCTGCTCCG
CCAGGAGGAGGCTGGCGTATCCCGGCCCCGACTCCCCGCCCTTCCCTCTC
CTGCCGTCGCCGACGAAAAACTCGTCCAACTCTCCGCCGCCGCCACCTGG
GTCGCGATGTCTTCTTCCCCCCGGCGGCCGCGGATCCCGGCTACCACTGA
GCCCCTGCAGGTCGGTGAGCTCGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11062:4137..4561+

>mRNA_L-elsbetiae_contig11062.958.1 ID=mRNA_L-elsbetiae_contig11062.958.1|Name=mRNA_L-elsbetiae_contig11062.958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig11062:4137..4561+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTTGCCGGCCCCCCGGAGGGGGCGTACAAAATAACCCAACAATACC
CCGTATCCCACGAAACCCAGCAAAAGCACCCTTCCTGCGCCCCCTCCTCT
TGCCGCCTGCCTTTTGCTCGCTACTGCTCCTGCTCCGCCAGGAGGAGGCT
GGCGTATCCCGGCCCCGACTCCCCGCCCTTCCCTCTCCTGCCGTCGCCGA
CGAAAAACTCGTCCAACTCTCCGCCGCCGCCACCTGGGTCGCGATGTCTT
CTTCCCCCCGGCGGCCGCGGATCCCGGCTACCACTGAGCCCCTGCAGGTC
GGTGAGCTCGAAATGCGTTGCCGGCCCCCCGGAGGGGGCGTACAAAATAA
CCCAACAATACCCCGTATCCCACGAAACCCAGCAAAAGCACCCTTCCTGC
GCCCCCTCCTCTTGCCGCCTGCCTTTTGCTCGCTACTGCTCCTGCTCCGC
CAGGAGGAGGCTGGCGTATCCCGGCCCCGACTCCCCGCCCTTCCCTCTCC
TGCCGTCGCCGACGAAAAACTCGTCCAACTCTCCGCCGCCGCCACCTGGG
TCGCGATGTCTTCTTCCCCCCGGCGGCCGCGGATCCCGGCTACCACTGAG
CCCCTGCAGGTCGGTGAGCTCGAA
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