mRNA_L-elsbetiae_contig11062.957.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11062.957.1
Unique NamemRNA_L-elsbetiae_contig11062.957.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11062.957.1 vs. uniprot
Match: D7FKA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA4_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.370e-56
Identity = 106/198 (53.54%), Postives = 129/198 (65.15%), Query Frame = 1 
Query:    1 QLLREDLRHPDVRKAVEHWTGQNRLSQDDADELMEDNYRIQSVCDKMAELQSLCKQASIGLPLSRVMAGKGLYE---PPPQVSGGTYTGAGQGQGPTTTNAGRSAVGTGSQEDALHRRKGAAAQQAGPLXXXXXXXXXXXXXXXXXXXXLEKEDSSWRQTLVEEVLRLGGVAVCALVFTILLKHFRGDDPLGKGLSGE 585
            +LL++DLR+ DV++A+EHWTGQNR+SQD ADELMEDNYRIQSVC +MAELQSLCKQASIGLPLS V+AGKGLY+    P Q S    +G+G   G      GR    +      L RRKGA A+                          E+++ SWR+ L EE LRL  V +CALVFT+LLKH+RGDDPLGKGL G+
Sbjct:   37 KLLQDDLRNTDVKRALEHWTGQNRMSQDHADELMEDNYRIQSVCSRMAELQSLCKQASIGLPLSHVLAGKGLYDNLDQPGQASAAATSGSG---GNAVDQTGRPTSTSDGSSSGLQRRKGATAK-----------GLHDATAGAEVGTGKEEDEPSWRRALAEEALRLTFVCLCALVFTLLLKHYRGDDPLGKGLPGQ 220
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BLAST of mRNA_L-elsbetiae_contig11062.957.1 vs. uniprot
Match: A0A2R5G976_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G976_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 7.850e-10
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    7 LREDLRHPDVRKAVEHWTGQNRLSQDDADELMEDNYRIQSVCDKMAELQSLCKQASIGLPLSRVMAG 207
            L+EDLR  DV  A++HWTG+NRLS ++A    E+N R++ V  K+  LQ+  + A IG+P+  ++AG
Sbjct:   17 LQEDLRDKDVLAAIDHWTGRNRLSTEEASRRFEENGRVRQVMSKLQRLQAESQAAGIGVPIMALLAG 83
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BLAST of mRNA_L-elsbetiae_contig11062.957.1 vs. uniprot
Match: W7TBK6_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBK6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.300e-7
Identity = 29/69 (42.03%), Postives = 47/69 (68.12%), Query Frame = 1 
Query:    7 LREDLRHPDVRKAVEHWTGQNRLSQDDADELMEDNYRIQSVCDKMAELQSLCKQASIGLPLSRVMAGKG 213
             ++DLR P VR A++HWT +NRL    A++LM+D YR+ +V  K+  LQ+ C++A + +PL  V+  +G
Sbjct:   17 FQDDLRQPQVRVALKHWTNENRLPPLQAEKLMKD-YRVLAVLQKLKSLQTACQRAGMAVPLDAVLRQEG 84
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11062.957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKA4_ECTSI1.370e-5653.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R5G976_9STRA7.850e-1044.78Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
W7TBK6_9STRA1.300e-742.03Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11062contigL-elsbetiae_contig11062:205..1932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_003360.1
Exons3
Model size585
Cds size585
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11062.957.1prot_L-elsbetiae_contig11062.957.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11062 205..1932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815321.2454424-CDS-L-elsbetiae_contig11062:204..3201622815321.2454424-CDS-L-elsbetiae_contig11062:204..320Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11062 205..320 +
1691682837.1769164-CDS-L-elsbetiae_contig11062:204..3201691682837.1769164-CDS-L-elsbetiae_contig11062:204..320Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11062 205..320 +
1622815321.2609074-CDS-L-elsbetiae_contig11062:649..7851622815321.2609074-CDS-L-elsbetiae_contig11062:649..785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11062 650..785 +
1691682837.1877172-CDS-L-elsbetiae_contig11062:649..7851691682837.1877172-CDS-L-elsbetiae_contig11062:649..785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11062 650..785 +
1622815321.3090534-CDS-L-elsbetiae_contig11062:1599..19321622815321.3090534-CDS-L-elsbetiae_contig11062:1599..1932Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11062 1600..1932 +
1691682837.198755-CDS-L-elsbetiae_contig11062:1599..19321691682837.198755-CDS-L-elsbetiae_contig11062:1599..1932Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11062 1600..1932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11062.957.1

>prot_L-elsbetiae_contig11062.957.1 ID=prot_L-elsbetiae_contig11062.957.1|Name=mRNA_L-elsbetiae_contig11062.957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=195bp
QLLREDLRHPDVRKAVEHWTGQNRLSQDDADELMEDNYRIQSVCDKMAEL
QSLCKQASIGLPLSRVMAGKGLYEPPPQVSGGTYTGAGQGQGPTTTNAGR
SAVGTGSQEDALHRRKGAAAQQAGPLGAAAAAAAAAGGRRGGGGGGLEKE
DSSWRQTLVEEVLRLGGVAVCALVFTILLKHFRGDDPLGKGLSGE
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mRNA from alignment at L-elsbetiae_contig11062:205..1932+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11062.957.1 ID=mRNA_L-elsbetiae_contig11062.957.1|Name=mRNA_L-elsbetiae_contig11062.957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1728bp|location=Sequence derived from alignment at L-elsbetiae_contig11062:205..1932+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCTCCTGCGGGAGGACTTGAGGCACCCGGACGTACGCAAGGCTGTGGA
GCACTGGACGGGCCAGAACAGATTGTCCCAAGACGACGCGGATGAGCTCA
TGGAGGACAACTACAGGTGTTTCTCCTTCTTCGCCTTTTTTTGTTTGTTT
TTGTCTTGGGGAGGATCTCCACAAAAGTGATCATTTTTCTGGGCAGCAGA
AACGCTGTAAAACAAATTGAGTTGTTGCAAAAAAAGTGGCTGACTTTCAT
CGGCGGCCAGAAATCGTGAAGCTCGTGGGTCCCGCCGCCCATGCTCCGCA
GAAAAATCGTATGTGTCGTGAACATGTGCTGCCGTTCTCCGATATTTTTT
AAGTGCCACCACCTCTCTCAACCGACTGCTTCGCAACATGTTCTGCTGCT
GCTATCTATGTGCCGCTGTTATATCCGCTGCTGACTGCTGCTCAGGATAC
AGTCGGTGTGCGACAAGATGGCCGAGCTGCAGAGCTTGTGCAAGCAGGCC
TCCATCGGGTTGCCTCTCTCCCGTGTGATGGCTGGCAAAGGGCTGTACGA
GCCGCCCCCCCAGGTCAGTGGTGGTACATACGTAAATGGTTGGTCAATTA
CTTCGACTAAAAGTTAACGCTGGGGCCAGTCAGGGGGGAAATCGCAGATA
ACTAACTCCACGCCTTTTTTTTCGCGAGGCACCTCGTTGAGAGGCATGTA
GCGTACGTAACCCATGGCTTGTCCATGAAAAGGGGCGGCGATACCAGAAA
ATAAAGCCAGGTGACTTAAAATAGCTCGAAGGTGTCATCCATGTGCGAGC
ACGCATATGTATATGTACGCACGCGACAGATGCCGAGGAACCCTTGAAAG
GGTGCAGCCCACCATCTACCCTTCAATCGACCCGGTCATCAAGACACCAA
CGTGCTCCGGCGCTTGTATTCTATTGCGTGCTCCGTGACTGAAGCCTTTG
TGGGGATGCGAACTCCTCGTGGTGCGCTCCGTCCTGTGCGTTTTCTATTG
TATGCTCCGTGACTGAAGCCTTTGTAGGGATGCGAACTCCTCGCGGTGCG
CTCCGTCCTTGCGAGCTCCATGCTGCTTCGTGAATTGAAGAGTTTTCTAT
ATACATAGGGATGCGAACTCTCCATGGTTCTTCGTAACGGAAGGCTTTGT
CGAGGCGCAAAGCTCATGGTGCTTCGTGACTGAAGGCTCTGCAAGGCCTT
TGCAGTCCATGGGGCACCGTGACCGGGGGCTCTGTAGGGATGCGAGCTCT
CCATGGTTGTTCTTCGTAGCGGAAAGCTTTGCAGGAGGGGTGCGAAGTCC
ATGGGTGCCCCGTGACTGGACTTTGCACAACCGACGAGAGCGTACCCGCC
CCTCCGCCCCCACCCTGCTGCTTTGCGCTTTTTTTTCGCACCCAGACTGG
AGCGGGGCAGGGTCAGGGTCCCACAACCACGAACGCGGGCCGATCAGCAG
TCGGCACCGGCAGTCAAGAAGATGCTTTGCATCGTCGAAAAGGAGCGGCC
GCGCAGCAGGCGGGCCCGCTTGGAGCGGCGGCGGCGGCGGCGGCGGCGGC
GGGGGGGAGGCGGGGGGGCGGGGGTGGGGGGCTCGAGAAAGAAGACTCGT
CATGGCGGCAGACGCTTGTCGAAGAGGTCTTAAGGCTGGGCGGTGTGGCC
GTGTGCGCGCTGGTGTTTACGATCCTGCTGAAGCATTTCCGTGGAGACGA
CCCGCTTGGGAAAGGACTGTCGGGGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11062:205..1932+

>mRNA_L-elsbetiae_contig11062.957.1 ID=mRNA_L-elsbetiae_contig11062.957.1|Name=mRNA_L-elsbetiae_contig11062.957.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1170bp|location=Sequence derived from alignment at L-elsbetiae_contig11062:205..1932+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCTCCTGCGGGAGGACTTGAGGCACCCGGACGTACGCAAGGCTGTGGA
GCACTGGACGGGCCAGAACAGATTGTCCCAAGACGACGCGGATGAGCTCA
TGGAGGACAACTACAGCAGCTCCTGCGGGAGGACTTGAGGCACCCGGACG
TACGCAAGGCTGTGGAGCACTGGACGGGCCAGAACAGATTGTCCCAAGAC
GACGCGGATGAGCTCATGGAGGACAACTACAGGATACAGTCGGTGTGCGA
CAAGATGGCCGAGCTGCAGAGCTTGTGCAAGCAGGCCTCCATCGGGTTGC
CTCTCTCCCGTGTGATGGCTGGCAAAGGGCTGTACGAGCCGCCCCCCCAG
GTCAGTGGTGGTACATACGATACAGTCGGTGTGCGACAAGATGGCCGAGC
TGCAGAGCTTGTGCAAGCAGGCCTCCATCGGGTTGCCTCTCTCCCGTGTG
ATGGCTGGCAAAGGGCTGTACGAGCCGCCCCCCCAGGTCAGTGGTGGTAC
ATACACTGGAGCGGGGCAGGGTCAGGGTCCCACAACCACGAACGCGGGCC
GATCAGCAGTCGGCACCGGCAGTCAAGAAGATGCTTTGCATCGTCGAAAA
GGAGCGGCCGCGCAGCAGGCGGGCCCGCTTGGAGCGGCGGCGGCGGCGGC
GGCGGCGGCGGGGGGGAGGCGGGGGGGCGGGGGTGGGGGGCTCGAGAAAG
AAGACTCGTCATGGCGGCAGACGCTTGTCGAAGAGGTCTTAAGGCTGGGC
GGTGTGGCCGTGTGCGCGCTGGTGTTTACGATCCTGCTGAAGCATTTCCG
TGGAGACGACCCGCTTGGGAAAGGACTGTCGGGGGAGACTGGAGCGGGGC
AGGGTCAGGGTCCCACAACCACGAACGCGGGCCGATCAGCAGTCGGCACC
GGCAGTCAAGAAGATGCTTTGCATCGTCGAAAAGGAGCGGCCGCGCAGCA
GGCGGGCCCGCTTGGAGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGGGGA
GGCGGGGGGGCGGGGGTGGGGGGCTCGAGAAAGAAGACTCGTCATGGCGG
CAGACGCTTGTCGAAGAGGTCTTAAGGCTGGGCGGTGTGGCCGTGTGCGC
GCTGGTGTTTACGATCCTGCTGAAGCATTTCCGTGGAGACGACCCGCTTG
GGAAAGGACTGTCGGGGGAG
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