mRNA_L-elsbetiae_contig1106.953.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1106.953.1
Unique NamemRNA_L-elsbetiae_contig1106.953.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1106.953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1106contigL-elsbetiae_contig1106:11221..12289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_005030.1
Exons2
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815320.544488-CDS-L-elsbetiae_contig1106:11220..114351622815320.544488-CDS-L-elsbetiae_contig1106:11220..11435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1106 11221..11435 -
1691682836.8073878-CDS-L-elsbetiae_contig1106:11220..114351691682836.8073878-CDS-L-elsbetiae_contig1106:11220..11435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1106 11221..11435 -
1622815320.5568652-CDS-L-elsbetiae_contig1106:12207..122891622815320.5568652-CDS-L-elsbetiae_contig1106:12207..12289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1106 12208..12289 -
1691682836.8192716-CDS-L-elsbetiae_contig1106:12207..122891691682836.8192716-CDS-L-elsbetiae_contig1106:12207..12289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1106 12208..12289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1106.953.1prot_L-elsbetiae_contig1106.953.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1106 11221..12289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1106.953.1

>prot_L-elsbetiae_contig1106.953.1 ID=prot_L-elsbetiae_contig1106.953.1|Name=mRNA_L-elsbetiae_contig1106.953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
MEASGGVSAGVIEDGSIDSPAAAGTKCASPAPATATAPLVTEATRPADCR
ESTATPAPTTTTVKRKTCLRISTSPPVEMTPTANKRTTPSNIAATAGSS
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mRNA from alignment at L-elsbetiae_contig1106:11221..12289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1106.953.1 ID=mRNA_L-elsbetiae_contig1106.953.1|Name=mRNA_L-elsbetiae_contig1106.953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1069bp|location=Sequence derived from alignment at L-elsbetiae_contig1106:11221..12289- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGCCAGCGGTGGAGTTAGTGCCGGAGTGATAGAGGACGGCTCGAT
AGATTCGCCGGCGGCGGCGGGTACAAAATGCGGTGAGCCTACTTTCTATG
TATGCAGCGTTCCAAGAGGATTGTGTCTAGTGTTGTAGAGACACTTACAG
CGACGGACAAAGCAGAGTTACTGGCTTGCTGTAGCACTACCGAGGTCAAG
AGTGGGGTGGGTCCACGGGATCTACACCCATCAGTCACCTCCTCTCCTCT
CTCTTTCTCCTCATCGCAATGCAAAAGAGCGCGGGTCGTTGTTTTCTTGA
ATCTTCTCGGCTTCTCGGTCATTTTTCCTTGGGGCGGAGGAGTTGCAAAA
GTAAGTGCTTACACACAGGTGCATTCGGTAGTGTGAGAGTACTTGTGTTG
GCCTACTGCGGTTGCCGGCGGTCCAGGGGAACACCCCTAGCAAGCAGCAG
ATAGGTCCCTTTTCCGGCTGGCAAGAAAAAGCAAACAAAGCTCACGATCT
TGTCGTGCACGCGCATGTTCCCCCATTTTCTGAATATCACCCATTTGCGA
TTCAGATTTGACGAGAGTAAAACAGTCCGGGCAGCCAAGGTATAGACGAT
TGACCACAAGATCGAGAGAGAGAGGGGGGGGGGGGATGAACAGATTGTTA
TGCTCACGTAGAGACCGCGAGACAGCGAAAGCAACAAGAGCTACTTTTCG
GAGTAAAAAGCGTAACCCCCAGAAAACAGACAACCGGTCATCTGCGGTCC
GCAAACTTCCCCTGCATAGCCGCCGCTCACATGTGCAAGTTTCAAATTTC
AAACTGTTGGCCCTTTTCCACGTATTTTTACCCCCACGGCTCGATCTCGA
ACAGCATCACCAGCACCAGCAACGGCGACGGCTCCTCTCGTGACCGAAGC
CACGCGCCCGGCGGACTGCAGGGAATCTACTGCTACTCCTGCTCCGACAA
CAACAACAGTGAAGCGAAAAACGTGCCTTCGGATCTCGACCAGCCCACCT
GTGGAAATGACGCCCACCGCAAACAAGAGGACGACGCCCTCCAACATCGC
TGCAACTGCAGGATCGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1106:11221..12289-

>mRNA_L-elsbetiae_contig1106.953.1 ID=mRNA_L-elsbetiae_contig1106.953.1|Name=mRNA_L-elsbetiae_contig1106.953.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig1106:11221..12289- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGCCAGCGGTGGAGTTAGTGCCGGAGTGATAGAGGACGGCTCGAT
AGATTCGCCGGCGGCGGCGGGTACAAAATGCGATGGAAGCCAGCGGTGGA
GTTAGTGCCGGAGTGATAGAGGACGGCTCGATAGATTCGCCGGCGGCGGC
GGGTACAAAATGCGCATCACCAGCACCAGCAACGGCGACGGCTCCTCTCG
TGACCGAAGCCACGCGCCCGGCGGACTGCAGGGAATCTACTGCTACTCCT
GCTCCGACAACAACAACAGTGAAGCGAAAAACGTGCCTTCGGATCTCGAC
CAGCCCACCTGTGGAAATGACGCCCACCGCAAACAAGAGGACGACGCCCT
CCAACATCGCTGCAACTGCAGGATCGTCCCATCACCAGCACCAGCAACGG
CGACGGCTCCTCTCGTGACCGAAGCCACGCGCCCGGCGGACTGCAGGGAA
TCTACTGCTACTCCTGCTCCGACAACAACAACAGTGAAGCGAAAAACGTG
CCTTCGGATCTCGACCAGCCCACCTGTGGAAATGACGCCCACCGCAAACA
AGAGGACGACGCCCTCCAACATCGCTGCAACTGCAGGATCGTCC
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