mRNA_L-elsbetiae_contig1106.952.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1106.952.1 vs. uniprot
Match: D8LG10_ECTSI (Cytochrome c oxidase subunit 6b n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG10_ECTSI) HSP 1 Score: 165 bits (417), Expect = 7.710e-47 Identity = 71/82 (86.59%), Postives = 78/82 (95.12%), Query Frame = 1 Query: 1 MSTASKLFKTAPLDSRFPTVNQANHCWNLYNEWVLCAKKADEAGENAKKCHPKRHNALAICPDEWTEKWDEDRDEGTYAGIK 246 MS+AS+ FKTAP DSRFPTVNQANHCWNLYNEWVLC KKA+EAG++AKKC+ KRHNALA+CPDEWTEKWDEDRDEGTYAGIK Sbjct: 1 MSSASRYFKTAPSDSRFPTVNQANHCWNLYNEWVLCTKKAEEAGDDAKKCYRKRHNALALCPDEWTEKWDEDRDEGTYAGIK 82
BLAST of mRNA_L-elsbetiae_contig1106.952.1 vs. uniprot
Match: A0A8J2WWH0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWH0_9STRA) HSP 1 Score: 104 bits (260), Expect = 1.610e-23 Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 1 Query: 25 KTAPLDSRFPTVNQANHCWNLYNEWVLCAKKADEAGENAKKCHPKRHNALAICPDEWTEKWDEDRDEGTYAGIK*T 252 KT P D RFP+ NQA+HCWN YNE+V+C KK E+ E+A C P R AL+ICPD+W KWDE+R+EGT++G+K T Sbjct: 40 KTTPYDKRFPSTNQASHCWNRYNEYVMCLKKT-ESDEDA--CKPMRQLALSICPDDWWNKWDEEREEGTFSGVKMT 112
BLAST of mRNA_L-elsbetiae_contig1106.952.1 vs. uniprot
Match: A0A7S2D0D8_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D0D8_9STRA) HSP 1 Score: 102 bits (255), Expect = 4.490e-23 Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1 Query: 16 KLFKTAPLDSRFPTVNQANHCWNLYNEWVLCAKKADEAGENAKKCHPKRHNALAICPDEWTEKWDEDRDEGTYAGIK*T 252 K+ KT+P D RFP+ NQANHCWN YNEWV+C K AG+ A C R AL+ICP++W+ KWDE+R+EG++AG++ T Sbjct: 21 KMIKTSPSDKRFPSQNQANHCWNRYNEWVMCLKGT--AGD-ADACKGVRQMALSICPEDWSNKWDEEREEGSFAGVEFT 96
BLAST of mRNA_L-elsbetiae_contig1106.952.1 vs. uniprot
Match: A0A7S2WRP3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRP3_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.500e-22 Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 16 KLFKTAPLDSRFPTVNQANHCWNLYNEWVLCAKKADEAGENAKKCHPKRHNALAICPDEWTEKWDEDRDEGTYAGIK 246 K +T P DSRFP+ NQANHCWN YNEW+LC K + + + C RH A ICP WT+KWDE+R EGT+AGIK Sbjct: 32 KAVRTTPRDSRFPSQNQANHCWNRYNEWLLCMKTTN----SEEGCKTMRHLAAKICPTIWTDKWDEERGEGTFAGIK 104
BLAST of mRNA_L-elsbetiae_contig1106.952.1 vs. uniprot
Match: F0XWE0_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWE0_AURAN) HSP 1 Score: 100 bits (248), Expect = 2.340e-22 Identity = 47/79 (59.49%), Postives = 54/79 (68.35%), Query Frame = 1 Query: 25 KTAPLDSRFPTVNQANHCWNL-------YNEWVLCAKKADEAGENAKKCHPKRHNALAICPDEWTEKWDEDRDEGTYAG 240 KT P D RFPT NQANHCWN YNEWVLC KK D E+A C P R AL+ICPD+W KWDE+R+EGT++G Sbjct: 2 KTTPPDKRFPTQNQANHCWNRAAAASDRYNEWVLCLKKTD-GDEDA--CKPMRQFALSICPDDWYNKWDEEREEGTFSG 77
BLAST of mRNA_L-elsbetiae_contig1106.952.1 vs. uniprot
Match: K0T774_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T774_THAOC) HSP 1 Score: 99.8 bits (247), Expect = 7.590e-22 Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1 Query: 16 KLFKTAPLDSRFPTVNQANHCWNLYNEWVLCAKKADEAGENAKKCHPKRHNALAICPDEWTEKWDEDRDEGTYAGIK 246 K +T P D+RFPT NQANHCWN YNEW+LC K ++ G C ++ AL ICP WT+KW+E+R+EGT+ GI+ Sbjct: 34 KATRTTPRDARFPTQNQANHCWNRYNEWLLCLKSTNDEGG----CKSMKNMALKICPSIWTDKWEEEREEGTFPGIQ 106
BLAST of mRNA_L-elsbetiae_contig1106.952.1 vs. uniprot
Match: A0A7S4JKT8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JKT8_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 9.920e-22 Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 1 Query: 16 KLFKTAPLDSRFPTVNQANHCWNLYNEWVLCAKKA--DEAGENAKKCHPKRHNALAICPDEWTEKWDEDRDEGTYAGIK 246 K +T P D+RFP+ NQ+NHCWN YNEW+LC K DEAG C R A++ICP W+EKWDE+R+E TY GIK Sbjct: 31 KSVRTTPRDARFPSQNQSNHCWNRYNEWLLCLKSTGGDEAG-----CKHMRQMAVSICPSIWSEKWDEEREENTYPGIK 104
BLAST of mRNA_L-elsbetiae_contig1106.952.1 vs. uniprot
Match: B8BSI6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSI6_THAPS) HSP 1 Score: 97.4 bits (241), Expect = 1.980e-21 Identity = 43/75 (57.33%), Postives = 51/75 (68.00%), Query Frame = 1 Query: 25 KTAPLDSRFPTVNQANHCWNLYNEWVLCAKKA-DEAGENAKKCHPKRHNALAICPDEWTEKWDEDRDEGTYAGIK 246 +T P D+RFPT NQANHCWN YNEW++C K DE G C R+ A+ ICP WT+KWDE+R EG Y GIK Sbjct: 1 RTTPRDARFPTQNQANHCWNRYNEWLVCLKSTQDEEG-----CKAMRNMAVKICPTIWTDKWDEERGEGIYPGIK 70
BLAST of mRNA_L-elsbetiae_contig1106.952.1 vs. uniprot
Match: A0A7S2SC35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SC35_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 2.470e-21 Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 1 Query: 1 MSTASKLFKTAPLDSRFPTVNQANHCWNLYNEWVLCAKKADEAGENAKKCHPKRHNALAICPDEWTEKWDEDRDEGTYAGIK 246 MS+ KT D RFP NQANHCWN YNEWV+C K + E+A C R A+++CP EW EKWDE+R+EG +AGIK Sbjct: 19 MSSIVNFMKTTQADKRFPNQNQANHCWNRYNEWVMCLK-GTQGDEDA--CKGVRQLAVSLCPCEWVEKWDEEREEGAFAGIK 97
BLAST of mRNA_L-elsbetiae_contig1106.952.1 vs. uniprot
Match: A0A7S4JKQ2_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JKQ2_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 3.220e-21 Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 1 Query: 16 KLFKTAPLDSRFPTVNQANHCWNLYNEWVLCAKKA--DEAGENAKKCHPKRHNALAICPDEWTEKWDEDRDEGTYAGIK 246 K +T P D+RFP+ NQ+NHCWN YNEW+LC K DEAG C R A++ICP W+EKWDE+R+E TY GIK Sbjct: 73 KSVRTTPRDARFPSQNQSNHCWNRYNEWLLCLKSTGGDEAG-----CKHMRQMAVSICPSIWSEKWDEEREENTYPGIK 146 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1106.952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1106.952.1 >prot_L-elsbetiae_contig1106.952.1 ID=prot_L-elsbetiae_contig1106.952.1|Name=mRNA_L-elsbetiae_contig1106.952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp MSTASKLFKTAPLDSRFPTVNQANHCWNLYNEWVLCAKKADEAGENAKKCback to top mRNA from alignment at L-elsbetiae_contig1106:3709..7275+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1106.952.1 ID=mRNA_L-elsbetiae_contig1106.952.1|Name=mRNA_L-elsbetiae_contig1106.952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3567bp|location=Sequence derived from alignment at L-elsbetiae_contig1106:3709..7275+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1106:3709..7275+ >mRNA_L-elsbetiae_contig1106.952.1 ID=mRNA_L-elsbetiae_contig1106.952.1|Name=mRNA_L-elsbetiae_contig1106.952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig1106:3709..7275+ (Laminarionema elsbetiae ELsaHSoW15)back to top |