mRNA_L-elsbetiae_contig1106.951.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1106.951.1
Unique NamemRNA_L-elsbetiae_contig1106.951.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1106.951.1 vs. uniprot
Match: D8LG11_ECTSI (SKA2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG11_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 4.910e-57
Identity = 90/118 (76.27%), Postives = 104/118 (88.14%), Query Frame = 1 
Query:    7 MQTSDVLKQLEINYGVLLNDLEFASHELDARMKDAARANVSIPDLHALEHRIRAIKTEMPGLAKDAAEVEGERKEAEAALNTALVENYNIMVGLYARLGVAPDPEWVATAESVERLIP 360
            ++++D+LKQLEIN+ + LNDLEFASH+LD+RMKDA RANVSIPDLH L HRIRAIKTE+PGLAKDA EVE ERKE E ALNT ++ENYN+MVGLYARLGVAPDPEWVATA  VE  +P
Sbjct:    4 LESTDILKQLEINFDLALNDLEFASHQLDSRMKDATRANVSIPDLHTLHHRIRAIKTELPGLAKDATEVEAERKETEIALNTTVIENYNVMVGLYARLGVAPDPEWVATAADVESFLP 121
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1106.951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG11_ECTSI4.910e-5776.27SKA2 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1106contigL-elsbetiae_contig1106:245..3496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_005010.1
Exons4
Model size360
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1106.951.1prot_L-elsbetiae_contig1106.951.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1106 245..3496 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815320.7016888-CDS-L-elsbetiae_contig1106:244..2911622815320.7016888-CDS-L-elsbetiae_contig1106:244..291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1106 245..291 -
1691682836.903364-CDS-L-elsbetiae_contig1106:244..2911691682836.903364-CDS-L-elsbetiae_contig1106:244..291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1106 245..291 -
1622815320.7141469-CDS-L-elsbetiae_contig1106:1749..18341622815320.7141469-CDS-L-elsbetiae_contig1106:1749..1834Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1106 1750..1834 -
1691682836.9121163-CDS-L-elsbetiae_contig1106:1749..18341691682836.9121163-CDS-L-elsbetiae_contig1106:1749..1834Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1106 1750..1834 -
1622815320.724979-CDS-L-elsbetiae_contig1106:2699..28111622815320.724979-CDS-L-elsbetiae_contig1106:2699..2811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1106 2700..2811 -
1691682836.9226305-CDS-L-elsbetiae_contig1106:2699..28111691682836.9226305-CDS-L-elsbetiae_contig1106:2699..2811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1106 2700..2811 -
1622815320.7343588-CDS-L-elsbetiae_contig1106:3380..34961622815320.7343588-CDS-L-elsbetiae_contig1106:3380..3496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1106 3381..3496 -
1691682836.9307516-CDS-L-elsbetiae_contig1106:3380..34961691682836.9307516-CDS-L-elsbetiae_contig1106:3380..3496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1106 3381..3496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1106.951.1

>prot_L-elsbetiae_contig1106.951.1 ID=prot_L-elsbetiae_contig1106.951.1|Name=mRNA_L-elsbetiae_contig1106.951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MTMQTSDVLKQLEINYGVLLNDLEFASHELDARMKDAARANVSIPDLHAL
EHRIRAIKTEMPGLAKDAAEVEGERKEAEAALNTALVENYNIMVGLYARL
GVAPDPEWVATAESVERLIP
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mRNA from alignment at L-elsbetiae_contig1106:245..3496-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1106.951.1 ID=mRNA_L-elsbetiae_contig1106.951.1|Name=mRNA_L-elsbetiae_contig1106.951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3252bp|location=Sequence derived from alignment at L-elsbetiae_contig1106:245..3496- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGATGCAAACGTCGGATGTTTTGAAGCAGCTGGAGATCAACTACGG
CGTGCTCTTGAATGATCTGGAGTTTGCGTCTCACGAGCTAGACGCTCGGA
TGAAGGACGCCGCAAGGTCAGTACAATAGGCGTTGCGGAGAAGGGTAGGC
ACGCACTAGTTTGGTGCACCCACAGCAGTACCAATTAGCTTTTCATCTGT
TTTCAAGCGGGTCATGTTGCCTCTGACGCCCAAGATGAACGGCTACTTCG
TAACACGTACTTGGCATCAACCGTTATGTAGATACTCCAACTAGTCCTAC
AATATGTACGTACATAGACTTGTCTAGAGGTTGATCTTGTGTCAGAGCAG
AGCATTTCGTGTGCTGTAAGCAACCAGGCTGTTGTATCCCCATGAAGTCG
TGTAGTGCTAGACGAAGCAACATGGGTGTTCACTGGAGAAAAGGGTTTGG
CCGCTGCAGCGGAGTTTCGAGCGCCCTCTTGACTCCGGCTTCGAGGAAGC
TTCGTGTGTCCGACGCGACCGGCCACCGTAACGTACGACGTGTAGCGCGG
CAGAGCGGAATAGCCCGCCGTACTTCCGCGTGGTATTTCCACCAGATGTT
TCTGCTGGGGCACTGATATACATGTGAGCCACTCTTTCGCGCCTCTCCCG
CCGTGCCTTCGTGAAACACTACTCTGCTCCTGTAGAGCCAATGTCTCCAT
TCCCGACCTCCACGCGCTCGAACACCGCATCCGAGCAATCAAGACGGAGA
TGCCAGGGCTCGCAAAGGACGCGGCCGAAGTTGAGGGGGAGAGAAAGGTG
AGCACACCTTTTTGTGACTCTACAGTCTTGTCGACAGGCAGCAGCAAACA
ACTCCAAATGATGGTGGTGGTGTGGTGCTCTCTCTCTGTAGATAAGGACA
ACAGGCGGTGGGTGGGTTGTCAGAATAACTGCACCGGCGTACAATATGTA
CTAGGGACACGGACTGCCTTCGCGACAAAAAACGGGGATTTTTGGTTTAT
AGGTGAAATAGTGAAATAGAGTAGTAGGGGTTCGGTAACCCTAACCCTAA
CCCTAACCACCGACCCCCCAGACATTCCCCGATTTCATACTTTATTATCC
CATATGCTTCGCCGACCAAAAACCTGCGTAGCCTACCGTGGGACACGTAC
ATGCCGGTACGCCTATGTAGCGGCCGGGTTGGCCCTTTACATTGGCCGCA
CGCGGTCGTCTCTGCGCACCAGGCGGTGGGTTAGGTCCAGGGTCGTGGAA
GTGGTGCACCACACGACCGTTATTTCTCCCCTTATTGCCCAGGCTTGGTT
TGCCGCTGTCCGTGAGCTATTGTACTACGTACTACGTAGTGGTGGTATGT
CGGAGTGGCTGCCACATGTACGGTTACCCCCACGTGCCCCCTGGGCTCTC
TGAACTGGACGGTCAGCATGTGCTCTGCAGTAGTATTGCAGAAGTAAATG
ACACCGTCCATTTAAGAGAACATCAACATTCGTCCCAGCTCTCGCTCTCT
CGCTCTCTCTTTGAAGTCCCGAAGGATAGACACGCCTTGCTGTTTGCGGC
CAGATCGATGTAGACCCTTTCAGCGTCTCTGGGTGGACGCTACAACTCAG
AGTTTATTGTTCATTGTTCCATGCGTGCTCGTCCTCTCGGTGCATGCACG
AAACCCACGCAGGAGGCAGAGGCTGCCTTGAACACGGCCTTGGTCGAAAA
CTACAACATTATGGTGGGGCTCTACGCGCGGCTCGGTGTTGCACCAGGTA
TATTACACTCGGGCCACGACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCGGTGATAGATGGCGCT
GTTCGCACTTTCTTGCGGTGGTCGCCTCTGCTGTGCCCTCCTCATGCTGT
TGCTTTTGAAAATAAATCAGGAAATCAAAGAAAGAAGAAGAAATTACCTC
CCCATAAGAGACGGGACTCCGTGGCGAACTAACACTTCAATGCCGCAGTG
ATGTGTAATAGATTGTATTGGTCCGGCCGAGTAGAAAAACACCTAAAAAT
ACTAAAAAAAAACGAAATCTCCCATGCATAACTCTGCCAGGTCAACCAAC
CAGCAAATATTCCGGGGAAAAGCCCACCGTACTGCCGTGGTCTTGTTGTC
TTCTTCTACATAAGATAGAAATACGTCGCAGGGTCTGACTACAATACAAG
TCAAAGTGCTGATTTAAATGTAACTGTGGTTCCTGCTGTGAAGAAGGGTA
ACTGTCAGTAATTCCATGAGAGGCAGATGTAGAAGAGGATGGAGAGTAAG
ATGGTATGACAGGGGTATGGCATCTTCGACATGTGTGTTGTGTGTAGGAG
GCGTTTTGACGAAATAAAAGAAAGACACTCCCCACAAAAGACGTGTTTTT
GTGAGTGGACAAAAGCCACCAGGACACCGACCTCATCCTCCATATATATG
ATTTGTCGAAACTGATGTTGTGTAGAATGTGTGGATGAGAGAATGTGTGC
CCCTCCAAGAAAAAAGGGGGTATCTTATCTTACACAAGGATGAAAAATAA
CCAGCAGATACAAGCAGATTCAGGTTCAACAACAGATTGGTAAGGGGAGG
TAGATAGATACACGAGCGGTGTAGGTTGAATGATCAGTCAGCTCGTCATT
ATTTAGTACAAATACGTGTGTGTGGTTTGTCAATGCATCAAGATCAGGCG
TGAGTGTGCACGTGCGTTTCTTGGCGACCATGAAGAAGTGGCACAGAAGG
CAAAATGGAACTCCTCTATCTTGTAATCTTGTGATGTCGTGCAGTGTCCT
TGCTTGCGTTACGCGATCTTGTCCCTCATAGCATGCCCGGCAGAAGTGAG
CATAGCATGCCCGGCAGAAGTGGTTGGTAGTACGCGAGCAGTTGCCCCCT
CTAGGTTCAAGCTCACTTGTGACGTGGTACATAATACGCGCACGCCTGTG
TCAGAGAAGAGGAGGAGCGGACCAACATGTGAGCTAGTTGGCGGAGCGGG
GAGAAAAATCACGGCGCGTGTAAAGCCTACGCTGATCGGTCCGCCCCAAC
ACCAAAGAGAGCTCGCTCATGGTTTGAAGGCTGCACGCCGCGAGTGTGAC
ACTTGACGCCGATTCCGACTGCGCTTCTCGTTTCCCCCCCGCGTGTTCTG
CCGTCACTGCTGCCGTCGTTGTTCTCTCTCTGTCTCTTGTGGGCGCCCGT
GCTAGATCCTGAGTGGGTTGCGACCGCTGAGAGCGTTGAGAGACTCATTC
CC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1106:245..3496-

>mRNA_L-elsbetiae_contig1106.951.1 ID=mRNA_L-elsbetiae_contig1106.951.1|Name=mRNA_L-elsbetiae_contig1106.951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig1106:245..3496- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGATGCAAACGTCGGATGTTTTGAAGCAGCTGGAGATCAACTACGG
CGTGCTCTTGAATGATCTGGAGTTTGCGTCTCACGAGCTAGACGCTCGGA
TGAAGGACGCCGCAAGATGACGATGCAAACGTCGGATGTTTTGAAGCAGC
TGGAGATCAACTACGGCGTGCTCTTGAATGATCTGGAGTTTGCGTCTCAC
GAGCTAGACGCTCGGATGAAGGACGCCGCAAGAGCCAATGTCTCCATTCC
CGACCTCCACGCGCTCGAACACCGCATCCGAGCAATCAAGACGGAGATGC
CAGGGCTCGCAAAGGACGCGGCCGAAGTTGAGGGGGAGAGAAAGAGCCAA
TGTCTCCATTCCCGACCTCCACGCGCTCGAACACCGCATCCGAGCAATCA
AGACGGAGATGCCAGGGCTCGCAAAGGACGCGGCCGAAGTTGAGGGGGAG
AGAAAGGAGGCAGAGGCTGCCTTGAACACGGCCTTGGTCGAAAACTACAA
CATTATGGTGGGGCTCTACGCGCGGCTCGGTGTTGCACCAGGAGGCAGAG
GCTGCCTTGAACACGGCCTTGGTCGAAAACTACAACATTATGGTGGGGCT
CTACGCGCGGCTCGGTGTTGCACCAGATCCTGAGTGGGTTGCGACCGCTG
AGAGCGTTGAGAGACTCATTCCCATCCTGAGTGGGTTGCGACCGCTGAGA
GCGTTGAGAGACTCATTCCC
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