mRNA_L-elsbetiae_contig11054.949.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11054.949.1
Unique NamemRNA_L-elsbetiae_contig11054.949.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11054.949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11054contigL-elsbetiae_contig11054:2509..4077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1569
Cds size804
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11054.949.1prot_L-elsbetiae_contig11054.949.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11054 3116..3919 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815320.4178357-UTR-L-elsbetiae_contig11054:2508..31151622815320.4178357-UTR-L-elsbetiae_contig11054:2508..3115Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11054 2509..3115 +
1691682836.7630513-UTR-L-elsbetiae_contig11054:2508..31151691682836.7630513-UTR-L-elsbetiae_contig11054:2508..3115Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11054 2509..3115 +
1622815320.437811-UTR-L-elsbetiae_contig11054:3919..40771622815320.437811-UTR-L-elsbetiae_contig11054:3919..4077Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11054 3920..4077 +
1691682836.780739-UTR-L-elsbetiae_contig11054:3919..40771691682836.780739-UTR-L-elsbetiae_contig11054:3919..4077Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11054 3920..4077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815320.4282227-CDS-L-elsbetiae_contig11054:3115..39191622815320.4282227-CDS-L-elsbetiae_contig11054:3115..3919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11054 3116..3919 +
1691682836.7715979-CDS-L-elsbetiae_contig11054:3115..39191691682836.7715979-CDS-L-elsbetiae_contig11054:3115..3919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11054 3116..3919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11054.949.1

>prot_L-elsbetiae_contig11054.949.1 ID=prot_L-elsbetiae_contig11054.949.1|Name=mRNA_L-elsbetiae_contig11054.949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=268bp
MNNDEAFSRALWPPASGTPPRSLQNALEERMDRAATKARKRETFRHFPEK
KAVRSSVGACWSLLVAFPRTSFQLPRSCDSPSESCGLIPRRRPPYFFFIS
ALHSREQPPSAFSTGVFCAVMATVAAFIPASVGVSLVRSSTPKIHGWGVP
AFIPARTVRGLVALVGVPVALFFLAEADGMFHGNTVVFSDQFLELDHRVG
QVAQLVLKDHTLLSALCATQGARGERAQTAAREWGRKHNFLRWGSELGGG
SSGARVNVRRPDFFFVC*
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mRNA from alignment at L-elsbetiae_contig11054:2509..4077+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11054.949.1 ID=mRNA_L-elsbetiae_contig11054.949.1|Name=mRNA_L-elsbetiae_contig11054.949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1569bp|location=Sequence derived from alignment at L-elsbetiae_contig11054:2509..4077+ (Laminarionema elsbetiae ELsaHSoW15)
TCAATGCCACACGCGGACGACACCCGCACGCCAAAGCCTATCGAAAAAAT
CTGGTAACTTCTGTCCAATTACCTCCCCAAAAAACACAGACAGGTGGTCT
GCAACCAGATGCAATTCGTGTGTTAACAAAAGTAACTCGTTTGCGTGTTT
GCAGGGAGCAAGATCCACACATGAGCAAGATCCACACAAGAGCAGGCTAG
CTACTAGCTAGACAACTCCCATTCCATATTTATCAGATTGACTGGTTAAA
CAACCAACAACAGACACAGCGCTGCATGCGACCTCTGCATCCAGAATCGG
GGTGTGTGGGGCACGGCCTCCCTCGGTGTCTCCTGGCGTATCACGCAGGG
TATCTTGTGATGAGCGGCAACTGCGCAACACCAGCGGCGAACGTTCGCAC
GCCTGGACAAAAATGCGGGCAAGAGTCTCTGCAACACAAGTAGCCTGAAC
CGACCTAGAAACTCCGGACAGACGCGAACTGCACAGCCTTCAGCCAAAGG
AAAAAGGCGCGTTTCTACAAAACAAAGCAATATTTACAACGCAATGGTCG
GGGCAGTTTTCGGCGAAGACTGCAGAAAGCCTCTTGCAGGGCTATTACAA
AAGCACGATGAATAATGACGAAGCTTTTTCTCGAGCGCTTTGGCCGCCAG
CATCAGGTACACCCCCGCGCTCTCTTCAAAACGCACTCGAGGAGCGAATG
GACCGAGCCGCTACAAAGGCACGCAAACGGGAAACCTTCCGCCATTTTCC
AGAAAAAAAAGCCGTCCGCAGCAGTGTCGGGGCCTGTTGGAGTCTACTTG
TAGCCTTCCCGCGGACTTCCTTTCAGCTGCCGCGGTCCTGCGATTCCCCC
TCGGAGAGCTGCGGGCTCATCCCTCGCCGTCGCCCGCCGTACTTTTTCTT
CATCTCCGCCCTCCATTCTCGTGAACAACCGCCGAGCGCGTTCTCCACCG
GCGTCTTTTGTGCCGTCATGGCCACCGTCGCCGCCTTCATCCCCGCCTCT
GTCGGGGTTTCCCTCGTCCGCTCCAGCACCCCTAAGATTCACGGTTGGGG
GGTCCCCGCCTTCATTCCGGCCCGCACTGTCCGGGGCCTCGTCGCCCTCG
TCGGCGTCCCCGTCGCCCTCTTCTTTCTCGCCGAGGCTGATGGGATGTTC
CACGGTAACACCGTGGTGTTCAGCGACCAGTTTTTGGAGCTCGATCACCG
CGTTGGTCAAGTTGCCCAGCTCGTGTTGAAAGACCACACTCTTTTGTCTG
CGTTGTGTGCGACACAAGGGGCGAGAGGCGAGAGAGCACAGACAGCCGCG
CGGGAATGGGGAAGGAAGCATAATTTCTTGAGGTGGGGTTCTGAGTTGGG
CGGGGGTTCGTCTGGTGCAAGAGTTAACGTACGCCGTCCTGATTTTTTTT
TTGTCTGCTGATGCTCAGCCAAGAAGAGAGTGAGCGACAGGGGAAGTAAT
ACATACTTCTATGTATCTCAATGATTCAGTTGAAAGATCTAAAGAGCCAG
GAATTGCTCCTCCCACCCCCTTAGTTTTGGGCCTCTTGTCCCCGTCTAGG
CATGTGTGTATCTCAAGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11054:2509..4077+

>mRNA_L-elsbetiae_contig11054.949.1 ID=mRNA_L-elsbetiae_contig11054.949.1|Name=mRNA_L-elsbetiae_contig11054.949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1608bp|location=Sequence derived from alignment at L-elsbetiae_contig11054:2509..4077+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATAATGACGAAGCTTTTTCTCGAGCGCTTTGGCCGCCAGCATCAGG
TACACCCCCGCGCTCTCTTCAAAACGCACTCGAGGAGCGAATGGACCGAG
CCGCTACAAAGGCACGCAAACGGGAAACCTTCCGCCATTTTCCAGAAAAA
AAAGCCGTCCGCAGCAGTGTCGGGGCCTGTTGGAGTCTACTTGTAGCCTT
CCCGCGGACTTCCTTTCAGCTGCCGCGGTCCTGCGATTCCCCCTCGGAGA
GCTGCGGGCTCATCCCTCGCCGTCGCCCGCCGTACTTTTTCTTCATCTCC
GCCCTCCATTCTCGTGAACAACCGCCGAGCGCGTTCTCCACCGGCGTCTT
TTGTGCCGTCATGGCCACCGTCGCCGCCTTCATCCCCGCCTCTGTCGGGG
TTTCCCTCGTCCGCTCCAGCACCCCTAAGATTCACGGTTGGGGGGTCCCC
GCCTTCATTCCGGCCCGCACTGTCCGGGGCCTCGTCGCCCTCGTCGGCGT
CCCCGTCGCCCTCTTCTTTCTCGCCGAGGCTGATGGGATGTTCCACGGTA
ACACCGTGGTGTTCAGCGACCAGTTTTTGGAGCTCGATCACCGCGTTGGT
CAAGTTGCCCAGCTCGTGTTGAAAGACCACACTCTTTTGTCTGCGTTGTG
TGCGACACAAGGGGCGAGAGGCGAGAGAGCACAGACAGCCGCGCGGGAAT
GGGGAAGGAAGCATAATTTCTTGAGGTGGGGTTCTGAGTTGGGCGGGGGT
TCGTCTGGTGCAAGAGTTAACGTACGCCGTCCTGATTTTTTTTTTGTCTG
CTGAATGAATAATGACGAAGCTTTTTCTCGAGCGCTTTGGCCGCCAGCAT
CAGGTACACCCCCGCGCTCTCTTCAAAACGCACTCGAGGAGCGAATGGAC
CGAGCCGCTACAAAGGCACGCAAACGGGAAACCTTCCGCCATTTTCCAGA
AAAAAAAGCCGTCCGCAGCAGTGTCGGGGCCTGTTGGAGTCTACTTGTAG
CCTTCCCGCGGACTTCCTTTCAGCTGCCGCGGTCCTGCGATTCCCCCTCG
GAGAGCTGCGGGCTCATCCCTCGCCGTCGCCCGCCGTACTTTTTCTTCAT
CTCCGCCCTCCATTCTCGTGAACAACCGCCGAGCGCGTTCTCCACCGGCG
TCTTTTGTGCCGTCATGGCCACCGTCGCCGCCTTCATCCCCGCCTCTGTC
GGGGTTTCCCTCGTCCGCTCCAGCACCCCTAAGATTCACGGTTGGGGGGT
CCCCGCCTTCATTCCGGCCCGCACTGTCCGGGGCCTCGTCGCCCTCGTCG
GCGTCCCCGTCGCCCTCTTCTTTCTCGCCGAGGCTGATGGGATGTTCCAC
GGTAACACCGTGGTGTTCAGCGACCAGTTTTTGGAGCTCGATCACCGCGT
TGGTCAAGTTGCCCAGCTCGTGTTGAAAGACCACACTCTTTTGTCTGCGT
TGTGTGCGACACAAGGGGCGAGAGGCGAGAGAGCACAGACAGCCGCGCGG
GAATGGGGAAGGAAGCATAATTTCTTGAGGTGGGGTTCTGAGTTGGGCGG
GGGTTCGTCTGGTGCAAGAGTTAACGTACGCCGTCCTGATTTTTTTTTTG
TCTGCTGA
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