mRNA_L-elsbetiae_contig11053.948.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11053.948.1
Unique NamemRNA_L-elsbetiae_contig11053.948.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11053.948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11053contigL-elsbetiae_contig11053:4825..5457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size633
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11053.948.1prot_L-elsbetiae_contig11053.948.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11053 4987..5337 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815320.3530705-UTR-L-elsbetiae_contig11053:4824..49861622815320.3530705-UTR-L-elsbetiae_contig11053:4824..4986Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11053 4825..4986 +
1691682836.7303946-UTR-L-elsbetiae_contig11053:4824..49861691682836.7303946-UTR-L-elsbetiae_contig11053:4824..4986Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11053 4825..4986 +
1622815320.376307-UTR-L-elsbetiae_contig11053:5337..54571622815320.376307-UTR-L-elsbetiae_contig11053:5337..5457Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11053 5338..5457 +
1691682836.754977-UTR-L-elsbetiae_contig11053:5337..54571691682836.754977-UTR-L-elsbetiae_contig11053:5337..5457Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11053 5338..5457 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815320.362752-CDS-L-elsbetiae_contig11053:4986..53371622815320.362752-CDS-L-elsbetiae_contig11053:4986..5337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11053 4987..5337 +
1691682836.7462258-CDS-L-elsbetiae_contig11053:4986..53371691682836.7462258-CDS-L-elsbetiae_contig11053:4986..5337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11053 4987..5337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11053.948.1

>prot_L-elsbetiae_contig11053.948.1 ID=prot_L-elsbetiae_contig11053.948.1|Name=mRNA_L-elsbetiae_contig11053.948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MLPIGYFCCWYLLKLSLAVHMYDIYIQTRVYCRHLRREKKSWASTAFPQI
KHAQPGEENMSTKLRGFVFFSASFSSSLWFFEARYLRALQCMCAGIDVSS
PPLQKAPVPPLPFSIA*
back to top

mRNA from alignment at L-elsbetiae_contig11053:4825..5457+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11053.948.1 ID=mRNA_L-elsbetiae_contig11053.948.1|Name=mRNA_L-elsbetiae_contig11053.948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=633bp|location=Sequence derived from alignment at L-elsbetiae_contig11053:4825..5457+ (Laminarionema elsbetiae ELsaHSoW15)
AACCATCCCCACCCCAGGGGTACGACGTCTTACGGCTCGCCACGACGTCT
TACGGCTTGCCTCGTCGAGTTGACGGGAGCGGCGGTGCCCTGAGTGGACA
GACCTCCGCAGCCTACACAAACATCGACTCATAGCCGCGCCGTGATCAAA
TCTTACAAGAAAATGCTGCCGATTGGATATTTTTGTTGTTGGTACCTACT
GAAACTATCTCTGGCGGTGCATATGTATGACATATATATCCAGACCAGAG
TTTACTGCCGGCATTTGCGCCGAGAGAAAAAAAGCTGGGCATCCACGGCG
TTCCCTCAGATAAAACATGCGCAACCGGGTGAGGAAAACATGTCTACGAA
ATTGCGCGGTTTTGTCTTTTTCTCGGCCTCTTTCTCCAGCTCGTTGTGGT
TCTTCGAGGCCCGTTACTTGCGTGCCTTGCAATGTATGTGTGCAGGCATC
GACGTGTCCAGCCCACCACTACAAAAAGCCCCCGTCCCGCCGCTGCCGTT
TTCCATTGCGTGAGTACGCTGCATATTGTACCTCGTTTTTCTTCCGCCCG
TGTACACTACACAAGCAACAACATACAGACAGCAGTACCATAGGGCTTAG
ATAGAACAGCAGTAGTGAGGAACGAACTTGAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11053:4825..5457+

>mRNA_L-elsbetiae_contig11053.948.1 ID=mRNA_L-elsbetiae_contig11053.948.1|Name=mRNA_L-elsbetiae_contig11053.948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig11053:4825..5457+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCCGATTGGATATTTTTGTTGTTGGTACCTACTGAAACTATCTCT
GGCGGTGCATATGTATGACATATATATCCAGACCAGAGTTTACTGCCGGC
ATTTGCGCCGAGAGAAAAAAAGCTGGGCATCCACGGCGTTCCCTCAGATA
AAACATGCGCAACCGGGTGAGGAAAACATGTCTACGAAATTGCGCGGTTT
TGTCTTTTTCTCGGCCTCTTTCTCCAGCTCGTTGTGGTTCTTCGAGGCCC
GTTACTTGCGTGCCTTGCAATGTATGTGTGCAGGCATCGACGTGTCCAGC
CCACCACTACAAAAAGCCCCCGTCCCGCCGCTGCCGTTTTCCATTGCGTG
AATGCTGCCGATTGGATATTTTTGTTGTTGGTACCTACTGAAACTATCTC
TGGCGGTGCATATGTATGACATATATATCCAGACCAGAGTTTACTGCCGG
CATTTGCGCCGAGAGAAAAAAAGCTGGGCATCCACGGCGTTCCCTCAGAT
AAAACATGCGCAACCGGGTGAGGAAAACATGTCTACGAAATTGCGCGGTT
TTGTCTTTTTCTCGGCCTCTTTCTCCAGCTCGTTGTGGTTCTTCGAGGCC
CGTTACTTGCGTGCCTTGCAATGTATGTGTGCAGGCATCGACGTGTCCAG
CCCACCACTACAAAAAGCCCCCGTCCCGCCGCTGCCGTTTTCCATTGCGT
GA
back to top