mRNA_L-elsbetiae_contig11050.947.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11050.947.1
Unique NamemRNA_L-elsbetiae_contig11050.947.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11050.947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11050contigL-elsbetiae_contig11050:2619..3138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size522
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815320.3103976-CDS-L-elsbetiae_contig11050:2618..29871622815320.3103976-CDS-L-elsbetiae_contig11050:2618..2987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11050 2619..2987 +
1691682836.7125864-CDS-L-elsbetiae_contig11050:2618..29871691682836.7125864-CDS-L-elsbetiae_contig11050:2618..2987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11050 2619..2987 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815320.324186-UTR-L-elsbetiae_contig11050:2987..31381622815320.324186-UTR-L-elsbetiae_contig11050:2987..3138Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11050 2988..3138 +
1691682836.721674-UTR-L-elsbetiae_contig11050:2987..31381691682836.721674-UTR-L-elsbetiae_contig11050:2987..3138Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11050 2988..3138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11050.947.1prot_L-elsbetiae_contig11050.947.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11050 2619..2987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11050.947.1

>prot_L-elsbetiae_contig11050.947.1 ID=prot_L-elsbetiae_contig11050.947.1|Name=mRNA_L-elsbetiae_contig11050.947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
GRAGEVSFCFSHLFPVLDGLLVTRTSCQSTEPWSHRRVPSPKAPTPRFCG
SCLEVFVARRVIQPSLSFVDGDVEVCVHTLGAIHMGKSYAMYMCTLCCCC
LYFKKCSDFSIQYLRESVLVQH*
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mRNA from alignment at L-elsbetiae_contig11050:2619..3138+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11050.947.1 ID=mRNA_L-elsbetiae_contig11050.947.1|Name=mRNA_L-elsbetiae_contig11050.947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=520bp|location=Sequence derived from alignment at L-elsbetiae_contig11050:2619..3138+ (Laminarionema elsbetiae ELsaHSoW15)
GGTAGAGCTGGGGAAGTCAGTTTTTGTTTCTCACATTTATTTCCAGTGCT
CGATGGTCTCCTTGTCACCAGGACATCTTGCCAGAGTACTGAACCGTGGT
CACACAGAAGGGTCCCTTCCCCCAAGGCCCCCACTCCCCGCTTCTGCGGT
TCTTGCCTTGAGGTTTTTGTCGCGAGAAGGGTTATTCAGCCGTCCCTTTC
CTTCGTCGACGGTGACGTCGAAGTTTGTGTACACACGCTAGGCGCTATCC
ACATGGGGAAGTCATATGCGATGTACATGTGCACCCTTTGTTGTTGTTGT
CTTTACTTCAAAAAATGCTCCGATTTCTCCATCCAGTACCTCCGTGAGTC
CGTACTAGTCCAACACTGACGTGATCGATTCCCTTGATCACAGGCTAACT
TACCCCTACAATCGAAAAAATTAGCTTTCGCTTGCACGATACGTCCATCT
TAGGGCGTCATTCGTATGTATCACACACGAGAGTGATCTAAAACGTGAAC
CCATCTTACGGTTCCCCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11050:2619..3138+

>mRNA_L-elsbetiae_contig11050.947.1 ID=mRNA_L-elsbetiae_contig11050.947.1|Name=mRNA_L-elsbetiae_contig11050.947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig11050:2619..3138+ (Laminarionema elsbetiae ELsaHSoW15)
GGTAGAGCTGGGGAAGTCAGTTTTTGTTTCTCACATTTATTTCCAGTGCT
CGATGGTCTCCTTGTCACCAGGACATCTTGCCAGAGTACTGAACCGTGGT
CACACAGAAGGGTCCCTTCCCCCAAGGCCCCCACTCCCCGCTTCTGCGGT
TCTTGCCTTGAGGTTTTTGTCGCGAGAAGGGTTATTCAGCCGTCCCTTTC
CTTCGTCGACGGTGACGTCGAAGTTTGTGTACACACGCTAGGCGCTATCC
ACATGGGGAAGTCATATGCGATGTACATGTGCACCCTTTGTTGTTGTTGT
CTTTACTTCAAAAAATGCTCCGATTTCTCCATCCAGTACCTCCGTGAGTC
CGTACTAGTCCAACACTGAGGTAGAGCTGGGGAAGTCAGTTTTTGTTTCT
CACATTTATTTCCAGTGCTCGATGGTCTCCTTGTCACCAGGACATCTTGC
CAGAGTACTGAACCGTGGTCACACAGAAGGGTCCCTTCCCCCAAGGCCCC
CACTCCCCGCTTCTGCGGTTCTTGCCTTGAGGTTTTTGTCGCGAGAAGGG
TTATTCAGCCGTCCCTTTCCTTCGTCGACGGTGACGTCGAAGTTTGTGTA
CACACGCTAGGCGCTATCCACATGGGGAAGTCATATGCGATGTACATGTG
CACCCTTTGTTGTTGTTGTCTTTACTTCAAAAAATGCTCCGATTTCTCCA
TCCAGTACCTCCGTGAGTCCGTACTAGTCCAACACTGA
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