mRNA_L-elsbetiae_contig1104.939.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1104.939.1
Unique NamemRNA_L-elsbetiae_contig1104.939.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1104.939.1 vs. uniprot
Match: UPI000C860815 (ankyrin repeat and SOCS box protein 3-like n=1 Tax=Dasypus novemcinctus TaxID=9361 RepID=UPI000C860815)

HSP 1 Score: 67.8 bits (164), Expect = 7.640e-11
Identity = 37/95 (38.95%), Postives = 61/95 (64.21%), Query Frame = -2
Query:  291 AAKLGHSRVVKILLDKGAKVSMAKNNGATALHESAEAGQLAVTTLLVKAVGGDMEAKT*T-TGSTPLHLAANRGHFEVLRVLIEAGANPNSRTLD 572
            AA+ G+ +V++ LL KG  V +A N G   +HE+A    +    +L+ A   +   KT T  G   LHLAA++GH++++++L+EAGA+PN+ TL+
Sbjct:   25 AARQGNVKVLRKLLKKGRSVDVADNRGWMPIHEAAYHNSIECLRMLIHADSSENYIKTKTFEGFCALHLAASQGHWKIIQILLEAGADPNTTTLE 119          
BLAST of mRNA_L-elsbetiae_contig1104.939.1 vs. uniprot
Match: A0A550CVG8_9AGAR (Ankyrin repeat-containing domain protein n=1 Tax=Auriculariopsis ampla TaxID=97359 RepID=A0A550CVG8_9AGAR)

HSP 1 Score: 70.5 bits (171), Expect = 2.440e-10
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = -2
Query:  288 AAKLGHSRVVKILLDKGAKVSMAKNNGATALHESAEAGQLAVTTLLVKAVGGDMEAKT*TTGSTPLHLAANRGHFEVLRVLIEAGANPNSRTLDG 572
            A K GH  V +IL++ GAKV+     G+T LH +AE G + +    +K     +E ++  TG  PLH A   GH E+  +L+EAGA+ NS +LDG
Sbjct:    7 ACKGGHEEVARILVESGAKVTSCSALGSTPLHLAAERGNIVLVRFFIKRHVDALEIRSTGTGHRPLHSACLGGHNELAHLLLEAGADINSSSLDG 101          
BLAST of mRNA_L-elsbetiae_contig1104.939.1 vs. uniprot
Match: A0A6P5WDW9_9EIME (tankyrase-2 n=2 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A6P5WDW9_9EIME)

HSP 1 Score: 69.7 bits (169), Expect = 4.620e-10
Identity = 41/90 (45.56%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  303 AAKLGHSRVVKILLDKGAKVSMAKNNGATALHESAEAGQLAVTTLLVKAVGGDMEAKT*TTGSTPLHLAANRGHFEVLRVLIEAGANPNS 572
            AA LGH+  +++LL +GAKV      G TALHE+  AGQLA    L+ A G D+  K  + G  P+ +AA   H  +L +L++AGANPNS
Sbjct:  133 AASLGHTEAIELLLQRGAKVEAESEEGCTALHEAVYAGQLAAVQKLLLAKGTDVN-KASSLGY-PVQVAAATMHKNILELLLQAGANPNS 220          
BLAST of mRNA_L-elsbetiae_contig1104.939.1 vs. uniprot
Match: A0A0K8R366_IXORI (Uncharacterized protein (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A0K8R366_IXORI)

HSP 1 Score: 68.6 bits (166), Expect = 5.060e-10
Identity = 38/95 (40.00%), Postives = 61/95 (64.21%), Query Frame = -2
Query:  291 AAKLGHSRVVKILLDKGAKVSMAKNNGATALHESAEAGQLAVTTLLVKAVGGDMEAKT*T-TGSTPLHLAANRGHFEVLRVLIEAGANPNSRTLD 572
            AA+ G+ +V++ LL KG  V +A N G T +HE+A    +    +L+ A   +   +T T  G + LH AA+RGH+ V+++L+EAGA+PN+ TL+
Sbjct:   75 AAREGNVKVLRKLLKKGLSVDVADNRGWTPIHEAAYHNSVECLRMLIHADSSENYIRTKTFEGFSALHFAASRGHWRVVQILLEAGADPNATTLE 169          
BLAST of mRNA_L-elsbetiae_contig1104.939.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 7.360e-10
Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = -2
Query:  303 STERAVSC-SRGG*SISMKEHRLMVTPLTYTFAAKLGHSRVVKILLDKGAKVSMAKNNGATALHESAEAGQLAVTTLLVKAVGGDMEAKT*TTGSTPLHLAANRGHFEVLRVLIEAGANPNS 665
            S ER V+  S+G   I      +  TPL   F   +G+ RVV++LL  GA+VS+A N+GATALH S     LAV+  LVKA G  +EA+      TPLH+AA +G  + + +LI AGAN +S
Sbjct:   16 SVERTVAVLSQGSVDIDGGYGDVGRTPLMAAFT--MGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKA-GAGVEARG--VDGTPLHVAAAKGFHKGMVMLIHAGANVDS 132          
BLAST of mRNA_L-elsbetiae_contig1104.939.1 vs. uniprot
Match: W5P1T2_SHEEP (Ankyrin repeat and SOCS box containing 3 n=16 Tax=Laurasiatheria TaxID=314145 RepID=W5P1T2_SHEEP)

HSP 1 Score: 68.6 bits (166), Expect = 1.150e-9
Identity = 37/99 (37.37%), Postives = 63/99 (63.64%), Query Frame = -2
Query:  291 TYTFAAKLGHSRVVKILLDKGAKVSMAKNNGATALHESAEAGQLAVTTLLVKAVGGDMEAKT*T-TGSTPLHLAANRGHFEVLRVLIEAGANPNSRTLD 584
            T   AA+ G+ +V++ LL KG  + +A N G   +HE+A    +    +L++A   +   KT T  G   LHLAA++GH++++++L+EAGA+PN+ TL+
Sbjct:   13 TVGLAAREGNVKVLRRLLKKGRSIDVADNRGWMPIHEAAYHNSVECLRMLIRADSSENYIKTKTFEGFCALHLAASQGHWKIIQILLEAGADPNATTLE 111          
BLAST of mRNA_L-elsbetiae_contig1104.939.1 vs. uniprot
Match: UPI001B353596 (ankyrin repeat and SOCS box protein 3 isoform X1 n=6 Tax=Ochotona TaxID=9977 RepID=UPI001B353596)

HSP 1 Score: 68.6 bits (166), Expect = 1.160e-9
Identity = 40/100 (40.00%), Postives = 65/100 (65.00%), Query Frame = -2
Query:  291 TYTFAAKLGHSRVVKILLDKGAKVSMAKNNGATALHESAEAGQLAVTTLLVKAVGGD--MEAKT*TTGSTPLHLAANRGHFEVLRVLIEAGANPNSRTLD 584
            T   AA+ G+ ++++ LL KG  V +A N G   +HE+A    +    +L+ A   +  +EAKT   GS  LHLAA++GH+++++VL+EAGA+PN+ TL+
Sbjct:   24 TVGLAAREGNIKLLRKLLRKGRSVDVADNRGWMPIHEAAYHNSVECLQMLIHADSSENYLEAKT-FEGSCALHLAASQGHWKIVQVLLEAGADPNATTLE 122          
BLAST of mRNA_L-elsbetiae_contig1104.939.1 vs. uniprot
Match: A0A5J5MNA8_MUNRE (SOCS box domain-containing protein n=2 Tax=Muntiacus TaxID=9885 RepID=A0A5J5MNA8_MUNRE)

HSP 1 Score: 68.2 bits (165), Expect = 1.280e-9
Identity = 38/99 (38.38%), Postives = 62/99 (62.63%), Query Frame = -2
Query:  291 TYTFAAKLGHSRVVKILLDKGAKVSMAKNNGATALHESAEAGQLAVTTLLVKAVGGDMEAKT*T-TGSTPLHLAANRGHFEVLRVLIEAGANPNSRTLD 584
            T   AA+ G+ +V++ LL KG  + +A N G   +HE+A    +    LL+ A   +   KT T  G   LHLAA++GH++++++L+EAGA+PN+ TL+
Sbjct:   13 TVGLAAREGNVKVLRKLLKKGRSIDVADNRGWMPIHEAAYHNSVECMRLLIHADSSENYIKTKTFEGFCALHLAASQGHWKIIQILLEAGADPNATTLE 111          
BLAST of mRNA_L-elsbetiae_contig1104.939.1 vs. uniprot
Match: A0A5F5PM92_HORSE (Ankyrin repeat and SOCS box containing 3 n=5 Tax=Laurasiatheria TaxID=314145 RepID=A0A5F5PM92_HORSE)

HSP 1 Score: 68.2 bits (165), Expect = 1.540e-9
Identity = 38/99 (38.38%), Postives = 63/99 (63.64%), Query Frame = -2
Query:  291 TYTFAAKLGHSRVVKILLDKGAKVSMAKNNGATALHESAEAGQLAVTTLLVKAVGGDMEAKT*T-TGSTPLHLAANRGHFEVLRVLIEAGANPNSRTLD 584
            T   AA+ G+ +V++ LL KG  V +A N G   +HE+A    +    +L++A   +   KT T  G   LHLAA++GH++++++L+EAGA+PN+ TL+
Sbjct:   13 TVGLAAREGNLKVLRKLLKKGHSVDVADNRGWMPIHEAAYHNSVECLRMLIRADSSENYIKTKTFEGFCALHLAASQGHWKIVQILLEAGADPNATTLE 111          
BLAST of mRNA_L-elsbetiae_contig1104.939.1 vs. uniprot
Match: A0A3Q0EEA8_CARSF (ankyrin repeat and SOCS box protein 3 isoform X2 n=1 Tax=Carlito syrichta TaxID=1868482 RepID=A0A3Q0EEA8_CARSF)

HSP 1 Score: 65.9 bits (159), Expect = 1.800e-9
Identity = 37/99 (37.37%), Postives = 61/99 (61.62%), Query Frame = -2
Query:  291 TYTFAAKLGHSRVVKILLDKGAKVSMAKNNGATALHESAEAGQLAVTTLLVKAVGGDMEAKT*T-TGSTPLHLAANRGHFEVLRVLIEAGANPNSRTLD 584
            T   AA+ G+ +V++ LL KG  V +A N G   +HE+A    +    +L+ A   +   KT T  G   LHLAA++GH++++++L+E GA+PN+ TL+
Sbjct:   13 TVGLAAREGNVKVLRKLLKKGRSVDVADNRGWMPIHEAAYHNSVECLQMLIHADSSENYIKTKTFEGFCALHLAASQGHWKIVQILLETGADPNATTLE 111          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1104.939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C8608157.640e-1138.95ankyrin repeat and SOCS box protein 3-like n=1 Tax... [more]
A0A550CVG8_9AGAR2.440e-1041.05Ankyrin repeat-containing domain protein n=1 Tax=A... [more]
A0A6P5WDW9_9EIME4.620e-1045.56tankyrase-2 n=2 Tax=Cyclospora cayetanensis TaxID=... [more]
A0A0K8R366_IXORI5.060e-1040.00Uncharacterized protein (Fragment) n=1 Tax=Ixodes ... [more]
A0A6H5JL58_9PHAE7.360e-1044.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W5P1T2_SHEEP1.150e-937.37Ankyrin repeat and SOCS box containing 3 n=16 Tax=... [more]
UPI001B3535961.160e-940.00ankyrin repeat and SOCS box protein 3 isoform X1 n... [more]
A0A5J5MNA8_MUNRE1.280e-938.38SOCS box domain-containing protein n=2 Tax=Muntiac... [more]
A0A5F5PM92_HORSE1.540e-938.38Ankyrin repeat and SOCS box containing 3 n=5 Tax=L... [more]
A0A3Q0EEA8_CARSF1.800e-937.37ankyrin repeat and SOCS box protein 3 isoform X2 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1104contigL-elsbetiae_contig1104:22785..23519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size736
Cds size465
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815319.344016-UTR-L-elsbetiae_contig1104:22784..230541622815319.344016-UTR-L-elsbetiae_contig1104:22784..23054Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1104 22785..23054 +
1691682836.0153294-UTR-L-elsbetiae_contig1104:22784..230541691682836.0153294-UTR-L-elsbetiae_contig1104:22784..23054Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1104 22785..23054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815319.3546467-CDS-L-elsbetiae_contig1104:23054..235191622815319.3546467-CDS-L-elsbetiae_contig1104:23054..23519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1104 23055..23519 +
1691682836.0263002-CDS-L-elsbetiae_contig1104:23054..235191691682836.0263002-CDS-L-elsbetiae_contig1104:23054..23519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1104 23055..23519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1104.939.1prot_L-elsbetiae_contig1104.939.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1104 23055..23519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1104.939.1

>prot_L-elsbetiae_contig1104.939.1 ID=prot_L-elsbetiae_contig1104.939.1|Name=mRNA_L-elsbetiae_contig1104.939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
MYSDVAPSSVRLLGFAPASISTLSTSKCPRFAARWSGVDPVVQVFASMSP
PTAFTSSVVTASCPASADSCRAVAPLFFAIETLAPLSRRILTTREWPSLA
ANVYVRGVTISRCSFIDIDHPPREQDTARSVESITRGRMKFIDRIPSHCS
AVWLV
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mRNA from alignment at L-elsbetiae_contig1104:22785..23519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1104.939.1 ID=mRNA_L-elsbetiae_contig1104.939.1|Name=mRNA_L-elsbetiae_contig1104.939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=735bp|location=Sequence derived from alignment at L-elsbetiae_contig1104:22785..23519+ (Laminarionema elsbetiae ELsaHSoW15)
CACCACTCCGGCGCTGGTCAGCATACCCATGATTCCCACATGCTGGTTCT GGGCGGCCGCTTTGAGAGCAGTTACACCGCCGCTTGCATCGCCACAACCC TCGATCCCAAACTGCTAAATCAGCTCGCGCGCAACTTCCAAGCGCCCTGA ATACGCCGCCGCTTCTAGAGGGACGACATCCCCACCCCATGGATTCGAAT AGTCAAGAGCGGGTCCGCTCCCGCACGAAGGAGCACCTTGATCGCATCCA CGTGTCCGTTCAGGGCCGCTATGTACAGCGATGTCGCTCCGTCCAGCGTA CGGCTGTTGGGGTTCGCCCCTGCCTCGATCAGCACTCTCAGCACCTCAAA GTGCCCGCGATTCGCAGCCAGGTGGAGCGGTGTGGACCCAGTAGTTCAGG TTTTTGCTTCCATGTCTCCGCCTACGGCCTTCACCAGCAGCGTCGTAACG GCCAGCTGCCCAGCTTCAGCCGACTCATGTAGAGCAGTAGCACCGTTATT CTTCGCCATTGAAACTTTGGCTCCCTTGTCCAGAAGGATCTTGACAACTC GAGAGTGGCCGAGTTTGGCGGCGAACGTATATGTAAGAGGGGTGACCATC AGCCGGTGTTCCTTCATCGATATCGATCACCCCCCTCGAGAGCAGGACAC GGCCCGCTCGGTGGAGTCCATCACACGCGGCAGAATGAAGTTCATTGATA GGATCCCAAGTCACTGCTCGGCTGTTTGGTTGGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1104:22785..23519+

>mRNA_L-elsbetiae_contig1104.939.1 ID=mRNA_L-elsbetiae_contig1104.939.1|Name=mRNA_L-elsbetiae_contig1104.939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig1104:22785..23519+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACAGCGATGTCGCTCCGTCCAGCGTACGGCTGTTGGGGTTCGCCCC
TGCCTCGATCAGCACTCTCAGCACCTCAAAGTGCCCGCGATTCGCAGCCA
GGTGGAGCGGTGTGGACCCAGTAGTTCAGGTTTTTGCTTCCATGTCTCCG
CCTACGGCCTTCACCAGCAGCGTCGTAACGGCCAGCTGCCCAGCTTCAGC
CGACTCATGTAGAGCAGTAGCACCGTTATTCTTCGCCATTGAAACTTTGG
CTCCCTTGTCCAGAAGGATCTTGACAACTCGAGAGTGGCCGAGTTTGGCG
GCGAACGTATATGTAAGAGGGGTGACCATCAGCCGGTGTTCCTTCATCGA
TATCGATCACCCCCCTCGAGAGCAGGACACGGCCCGCTCGGTGGAGTCCA
TCACACGCGGCAGAATGAAGTTCATTGATAGGATCCCAAGTCACTGCTCG
GCTGTTTGGTTGGTTATGTACAGCGATGTCGCTCCGTCCAGCGTACGGCT
GTTGGGGTTCGCCCCTGCCTCGATCAGCACTCTCAGCACCTCAAAGTGCC
CGCGATTCGCAGCCAGGTGGAGCGGTGTGGACCCAGTAGTTCAGGTTTTT
GCTTCCATGTCTCCGCCTACGGCCTTCACCAGCAGCGTCGTAACGGCCAG
CTGCCCAGCTTCAGCCGACTCATGTAGAGCAGTAGCACCGTTATTCTTCG
CCATTGAAACTTTGGCTCCCTTGTCCAGAAGGATCTTGACAACTCGAGAG
TGGCCGAGTTTGGCGGCGAACGTATATGTAAGAGGGGTGACCATCAGCCG
GTGTTCCTTCATCGATATCGATCACCCCCCTCGAGAGCAGGACACGGCCC
GCTCGGTGGAGTCCATCACACGCGGCAGAATGAAGTTCATTGATAGGATC
CCAAGTCACTGCTCGGCTGTTTGGTTGGTT
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