mRNA_L-elsbetiae_contig110.906.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig110.906.1
Unique NamemRNA_L-elsbetiae_contig110.906.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig110.906.1 vs. uniprot
Match: D8LB69_ECTSI (Cell division control protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB69_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.000e-40
Identity = 105/197 (53.30%), Postives = 118/197 (59.90%), Query Frame = 2 
Query:  233 QRRPEAAAITGLQVLFVLLETMDRFRRLSSLSWVCFLATCPDGTALNPSLLQRGRLEAVVRLGALDSSVQASVLGIHARRMTLDLLP--PPASS--------------------------TTV--------------DPAATVAGTIPVSPSLVVPSPLPSP-RTREEFLLLVAARCHGYIGSDLERLCHEAAMSNF 694
            +RRPEAA IT LQVL VLLE MDRFRR  S   V FLATCPD  AL PSLLQRGRLEAV+RLGALDS+ +AS+L IHAR M L++LP  PP  S                          T V              +  A  A   PVS  + +  P  SP RTR+EFL LVAARCHGY+GSDLERLC EAAMS+F
Sbjct:  329 RRRPEAAGITELQVLSVLLEAMDRFRRPPSAPRVFFLATCPDPAALGPSLLQRGRLEAVLRLGALDSAARASILSIHARDMVLEVLPSSPPLPSRPXXXXXXXXXXXXXXXXXXXXXXEKTDVVDDESPFRLEKPNREEEAEAAAATPVSAVVALTPPAVSPPRTRDEFLELVAARCHGYLGSDLERLCREAAMSHF 525
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig110.906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB69_ECTSI1.000e-4053.30Cell division control protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig110contigL-elsbetiae_contig110:49465..51470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue2e-37
Seed eggNOG ortholog2880.D8LB69
KEGG koko:K13525
KEGG TC3.A.16.1
KEGG Pathwayko04141,ko05134,map04141,map05134
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP binding
EggNOG OGsCOG0464@1,KOG0730@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko04131,ko04147
Exons4
Model size924
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig110.906.1prot_L-elsbetiae_contig110.906.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig110 50197..51342 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815316.490981-UTR-L-elsbetiae_contig110:49464..495311622815316.490981-UTR-L-elsbetiae_contig110:49464..49531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig110 49465..49531 +
1691682834.2866406-UTR-L-elsbetiae_contig110:49464..495311691682834.2866406-UTR-L-elsbetiae_contig110:49464..49531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig110 49465..49531 +
1622815316.502974-UTR-L-elsbetiae_contig110:49759..498531622815316.502974-UTR-L-elsbetiae_contig110:49759..49853Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig110 49760..49853 +
1691682834.2979133-UTR-L-elsbetiae_contig110:49759..498531691682834.2979133-UTR-L-elsbetiae_contig110:49759..49853Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig110 49760..49853 +
1622815316.5138755-UTR-L-elsbetiae_contig110:50173..501961622815316.5138755-UTR-L-elsbetiae_contig110:50173..50196Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig110 50174..50196 +
1691682834.3069623-UTR-L-elsbetiae_contig110:50173..501961691682834.3069623-UTR-L-elsbetiae_contig110:50173..50196Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig110 50174..50196 +
1622815316.5452373-UTR-L-elsbetiae_contig110:51342..514701622815316.5452373-UTR-L-elsbetiae_contig110:51342..51470Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig110 51343..51470 +
1691682834.3441043-UTR-L-elsbetiae_contig110:51342..514701691682834.3441043-UTR-L-elsbetiae_contig110:51342..51470Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig110 51343..51470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815316.525591-CDS-L-elsbetiae_contig110:50196..502831622815316.525591-CDS-L-elsbetiae_contig110:50196..50283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig110 50197..50283 +
1691682834.3156922-CDS-L-elsbetiae_contig110:50196..502831691682834.3156922-CDS-L-elsbetiae_contig110:50196..50283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig110 50197..50283 +
1622815316.5356526-CDS-L-elsbetiae_contig110:50817..513421622815316.5356526-CDS-L-elsbetiae_contig110:50817..51342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig110 50818..51342 +
1691682834.3303206-CDS-L-elsbetiae_contig110:50817..513421691682834.3303206-CDS-L-elsbetiae_contig110:50817..51342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig110 50818..51342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig110.906.1

>prot_L-elsbetiae_contig110.906.1 ID=prot_L-elsbetiae_contig110.906.1|Name=mRNA_L-elsbetiae_contig110.906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=204bp
MLSIGGGPGPDRAGDAQRRPEAAAITGLQVLFVLLETMDRFRRLSSLSWV
CFLATCPDGTALNPSLLQRGRLEAVVRLGALDSSVQASVLGIHARRMTLD
LLPPPASSTTVDPAATVAGTIPVSPSLVVPSPLPSPRTREEFLLLVAARC
HGYIGSDLERLCHEAAMSNFLGGFERRPAGLAGRAFGRYVGWRHGTAGAS
FGS*
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mRNA from alignment at L-elsbetiae_contig110:49465..51470+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig110.906.1 ID=mRNA_L-elsbetiae_contig110.906.1|Name=mRNA_L-elsbetiae_contig110.906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2006bp|location=Sequence derived from alignment at L-elsbetiae_contig110:49465..51470+ (Laminarionema elsbetiae ELsaHSoW15)
TTAACAGCGCCTTCAAGCGGACTCCTGTTCACGGACCGACCTGAGTAGGG
AAGACGCTTCTTGCCAGGTGGGTGGGGTACCTTGAGTCGAGTACTACAAT
GCATCACCACGATGCTTTTATTCTTTATTCAGTATTTGTCCGTCCCCCCT
TGTTGATTGAAGTGTAGTTGTAGTGGAGAAGTTAAAGTTTTTGGGGAAAG
TGCTGTCTGTCCCACAAGACTTCCAAGTTTGTGTTACTGCTGTGGCACAA
CTGTCATACCGACTGGTCGACCTGAATTGCTCTCGTTGCCCCCAGGTCTG
TCGCGGAGCACTCGAGCGCGCCGTGGTTTTTTCTCGACTGTGCTTCGGTG
TTCCGACGCGACCGTGGCAAGGCGGAGCAGTATATGCAGGTACTACTGTC
CCCGCGCTGTCGATAGGTAGCTCACTTGGTTTTCTAGCACCGTCTATGGT
GCTGCTTTGTCTTTCTTCCCACTACAGTTGTGCAACACTGGATAACCGCC
TGTGTCTGTCTACTGGTAGTAGCTTTCAACACAGCCGTGACCCACCACTA
TAACTGCGCACCCCGAGGCCGCTTGAACGACAAACACACGACAAGTCGAC
GAAGAACTGAACGCATGTGTAGGTCGAATTGTTTTCTCTTGATGTCCCCT
TGCCGCGTTCGGTTGTTCGCCTTCTGACGGGGACATCTCTTGTCCGCTTC
GAATTATAGGATTTTCTGACTAACGCTGGGTCATGCTCTCCATCGGTGGT
GGTCCTGGACCAGATCGGGCAGGAGACGCCCAGAGGCGCCCAGAGGCTGC
CGCCATCACTGGGCTACAGGTGTGGAAAACATTATTCTCGGCGATACACA
GAACCTCTGCAGACATGTGGCTAGCACGACGTGGCATCCGCTATATCCAC
CGATTGTGCCGGTTATTATGTTTACCATTCCCGCATGTTCTAAGATTTCA
GTAAGTTATCGGCTGCGCCGCGATGATATACCATGCTTCGAACGGCCACG
CTCTGTTGTAAGCGGCAGAAGTAGACATTAAAAAAAGGATACGTGTTCCA
TCGCCGACCCGCTTCCCTCCCCCCTCTTTTTCTGCCTAACTTTATTCGCC
TCATCTGTTCTATTTCGGAGCACGAAATGGCACAATTTTTAAGCCCGCCA
CTCCGCCGATGAACTAAATAGCGGTTCAGGTTTTACTAAGGTATTGAACT
GTAGCCTGCACAGAATGGTAGCGTGATTAAATGTAGCACTCGGTATTCCG
CTCTGCCACCGCACAACCTTTCTTGCGTCTTTGCCTCCACCCGATCTCGA
TTCTCCACCTCCTTATTTGTCGGCGGCCGTTTCTTCGGCTGACCTGGCTG
CAGGTACTTTTCGTCCTTCTCGAGACGATGGACCGCTTCCGCCGCTTATC
GTCCTTGTCTTGGGTATGCTTCTTGGCCACGTGCCCGGATGGGACCGCTC
TCAACCCATCGCTGCTGCAGCGGGGCCGCCTGGAAGCCGTGGTGCGGCTC
GGAGCGTTGGACAGCTCCGTGCAAGCGTCGGTATTGGGCATCCACGCCAG
GCGTATGACTCTAGATTTGCTGCCGCCGCCGGCGTCGTCGACGACTGTTG
ATCCTGCTGCTACGGTTGCGGGGACAATACCGGTTTCTCCCTCACTTGTA
GTGCCTTCGCCGCTTCCATCGCCGCGGACAAGAGAAGAGTTCCTTCTACT
GGTGGCCGCCAGGTGCCACGGGTATATCGGGTCGGACCTGGAACGCTTGT
GCCATGAGGCCGCCATGAGCAACTTTCTGGGCGGCTTTGAACGTCGTCCG
GCCGGCCTTGCTGGTCGGGCGTTCGGTCGGTATGTGGGGTGGCGACATGG
GACGGCAGGTGCGTCGTTTGGTAGCTGACTGGGAGCGGTGATGCTGTTCT
TCGAAGTAATGTGCCTCCTCTTCAACAATAGAACAAAATATATTACCGTG
AAGGTCATAGGCGAAAAAAATACAGATTGAAGAGCCGTATGTGTTCGAAA
GGCAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig110:49465..51470+

>mRNA_L-elsbetiae_contig110.906.1 ID=mRNA_L-elsbetiae_contig110.906.1|Name=mRNA_L-elsbetiae_contig110.906.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1224bp|location=Sequence derived from alignment at L-elsbetiae_contig110:49465..51470+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCTCCATCGGTGGTGGTCCTGGACCAGATCGGGCAGGAGACGCCCA
GAGGCGCCCAGAGGCTGCCGCCATCACTGGGCTACAGATGCTCTCCATCG
GTGGTGGTCCTGGACCAGATCGGGCAGGAGACGCCCAGAGGCGCCCAGAG
GCTGCCGCCATCACTGGGCTACAGGTACTTTTCGTCCTTCTCGAGACGAT
GGACCGCTTCCGCCGCTTATCGTCCTTGTCTTGGGTATGCTTCTTGGCCA
CGTGCCCGGATGGGACCGCTCTCAACCCATCGCTGCTGCAGCGGGGCCGC
CTGGAAGCCGTGGTGCGGCTCGGAGCGTTGGACAGCTCCGTGCAAGCGTC
GGTATTGGGCATCCACGCCAGGCGTATGACTCTAGATTTGCTGCCGCCGC
CGGCGTCGTCGACGACTGTTGATCCTGCTGCTACGGTTGCGGGGACAATA
CCGGTTTCTCCCTCACTTGTAGTGCCTTCGCCGCTTCCATCGCCGCGGAC
AAGAGAAGAGTTCCTTCTACTGGTGGCCGCCAGGTGCCACGGGTATATCG
GGTCGGACCTGGAACGCTTGTGCCATGAGGCCGCCATGAGCAACTTTCTG
GGCGGCTTTGAACGTCGTCCGGCCGGCCTTGCTGGTCGGGCGTTCGGTCG
GTATGTGGGGTGGCGACATGGGACGGCAGGTGCGTCGTTTGGTAGCTGAG
TACTTTTCGTCCTTCTCGAGACGATGGACCGCTTCCGCCGCTTATCGTCC
TTGTCTTGGGTATGCTTCTTGGCCACGTGCCCGGATGGGACCGCTCTCAA
CCCATCGCTGCTGCAGCGGGGCCGCCTGGAAGCCGTGGTGCGGCTCGGAG
CGTTGGACAGCTCCGTGCAAGCGTCGGTATTGGGCATCCACGCCAGGCGT
ATGACTCTAGATTTGCTGCCGCCGCCGGCGTCGTCGACGACTGTTGATCC
TGCTGCTACGGTTGCGGGGACAATACCGGTTTCTCCCTCACTTGTAGTGC
CTTCGCCGCTTCCATCGCCGCGGACAAGAGAAGAGTTCCTTCTACTGGTG
GCCGCCAGGTGCCACGGGTATATCGGGTCGGACCTGGAACGCTTGTGCCA
TGAGGCCGCCATGAGCAACTTTCTGGGCGGCTTTGAACGTCGTCCGGCCG
GCCTTGCTGGTCGGGCGTTCGGTCGGTATGTGGGGTGGCGACATGGGACG
GCAGGTGCGTCGTTTGGTAGCTGA
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