mRNA_L-elsbetiae_contig11.898.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11.898.1
Unique NamemRNA_L-elsbetiae_contig11.898.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11.898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11contigL-elsbetiae_contig11:51980..52720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size741
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11.898.1prot_L-elsbetiae_contig11.898.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11 52189..52602 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815315.1914418-UTR-L-elsbetiae_contig11:51979..521881622815315.1914418-UTR-L-elsbetiae_contig11:51979..52188Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11 51980..52188 +
1691682833.3531313-UTR-L-elsbetiae_contig11:51979..521881691682833.3531313-UTR-L-elsbetiae_contig11:51979..52188Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11 51980..52188 +
1622815315.2152374-UTR-L-elsbetiae_contig11:52602..527201622815315.2152374-UTR-L-elsbetiae_contig11:52602..52720Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11 52603..52720 +
1691682833.3723366-UTR-L-elsbetiae_contig11:52602..527201691682833.3723366-UTR-L-elsbetiae_contig11:52602..52720Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11 52603..52720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815315.2011764-CDS-L-elsbetiae_contig11:52188..526021622815315.2011764-CDS-L-elsbetiae_contig11:52188..52602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11 52189..52602 +
1691682833.362769-CDS-L-elsbetiae_contig11:52188..526021691682833.362769-CDS-L-elsbetiae_contig11:52188..52602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11 52189..52602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11.898.1

>prot_L-elsbetiae_contig11.898.1 ID=prot_L-elsbetiae_contig11.898.1|Name=mRNA_L-elsbetiae_contig11.898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
MRLPNSSMRRKTLPAQLHTRLYVRHTCSNWLYKKQIEAPNTTPHARSLYT
GVRKRPYTPRSNKPFTTTTETTPAQQPKPSSEKERKGVRTFCRWSTRKAT
FPYHPTSPPYTKNKYERNTQLPTNPQPHQATTASPTC*
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mRNA from alignment at L-elsbetiae_contig11:51980..52720+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11.898.1 ID=mRNA_L-elsbetiae_contig11.898.1|Name=mRNA_L-elsbetiae_contig11.898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=741bp|location=Sequence derived from alignment at L-elsbetiae_contig11:51980..52720+ (Laminarionema elsbetiae ELsaHSoW15)
GGACGCTCTCCCACACTCTCGATGTGCAACAGCAGTCGGCCGCAAGCCTG
GATGCTGTTTCATTTGCAAGTAGCCTAGTCCAAATCCTATCAGGTGAAAT
GTCGAACACAAAGTGTTGCCGTTTCACTGCCGATGAATCAATGATGAGTG
ATAATTAGAGTTACAACCTGCATACCTACCCTCCCCCCTCAGCATTTCCG
CTGGTCGCAATGAGGTTACCCAACAGCAGCATGAGAAGGAAAACACTTCC
CGCACAACTGCACACACGCTTGTATGTACGCCACACATGCAGTAATTGGC
TTTACAAAAAACAGATAGAGGCACCAAACACGACGCCCCACGCACGATCC
CTTTACACGGGTGTCCGCAAGCGACCATACACGCCGAGGAGCAATAAACC
ATTCACTACGACTACTGAAACTACACCAGCACAGCAGCCAAAGCCATCGT
CCGAAAAGGAGAGGAAAGGCGTGCGCACTTTTTGCAGGTGGAGCACAAGG
AAGGCTACCTTCCCATATCACCCGACAAGCCCGCCATACACAAAAAACAA
GTATGAACGCAACACACAGTTACCGACGAACCCTCAACCACACCAGGCAA
CAACAGCATCGCCAACCTGCTGAGTTCTTCCAGAGAGGCGACATCGCCAA
TACAAATGCTCCCCCTTCAACCAGCCCGCACCAAGAGAGTGCAGCACACA
GGACACCCACCACCCACCACTTACGAATAGACCACAAAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11:51980..52720+

>mRNA_L-elsbetiae_contig11.898.1 ID=mRNA_L-elsbetiae_contig11.898.1|Name=mRNA_L-elsbetiae_contig11.898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig11:51980..52720+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGTTACCCAACAGCAGCATGAGAAGGAAAACACTTCCCGCACAACT
GCACACACGCTTGTATGTACGCCACACATGCAGTAATTGGCTTTACAAAA
AACAGATAGAGGCACCAAACACGACGCCCCACGCACGATCCCTTTACACG
GGTGTCCGCAAGCGACCATACACGCCGAGGAGCAATAAACCATTCACTAC
GACTACTGAAACTACACCAGCACAGCAGCCAAAGCCATCGTCCGAAAAGG
AGAGGAAAGGCGTGCGCACTTTTTGCAGGTGGAGCACAAGGAAGGCTACC
TTCCCATATCACCCGACAAGCCCGCCATACACAAAAAACAAGTATGAACG
CAACACACAGTTACCGACGAACCCTCAACCACACCAGGCAACAACAGCAT
CGCCAACCTGCTGAATGAGGTTACCCAACAGCAGCATGAGAAGGAAAACA
CTTCCCGCACAACTGCACACACGCTTGTATGTACGCCACACATGCAGTAA
TTGGCTTTACAAAAAACAGATAGAGGCACCAAACACGACGCCCCACGCAC
GATCCCTTTACACGGGTGTCCGCAAGCGACCATACACGCCGAGGAGCAAT
AAACCATTCACTACGACTACTGAAACTACACCAGCACAGCAGCCAAAGCC
ATCGTCCGAAAAGGAGAGGAAAGGCGTGCGCACTTTTTGCAGGTGGAGCA
CAAGGAAGGCTACCTTCCCATATCACCCGACAAGCCCGCCATACACAAAA
AACAAGTATGAACGCAACACACAGTTACCGACGAACCCTCAACCACACCA
GGCAACAACAGCATCGCCAACCTGCTGA
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