mRNA_L-elsbetiae_contig11.894.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11.894.1
Unique NamemRNA_L-elsbetiae_contig11.894.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11.894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11contigL-elsbetiae_contig11:19840..21004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_003990.2
Exons2
Model size391
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815315.0833144-CDS-L-elsbetiae_contig11:19840..199631622815315.0833144-CDS-L-elsbetiae_contig11:19840..19963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11 19841..19963 -
1691682833.2823231-CDS-L-elsbetiae_contig11:19840..199631691682833.2823231-CDS-L-elsbetiae_contig11:19840..19963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11 19841..19963 -
1622815315.0951016-CDS-L-elsbetiae_contig11:20737..210041622815315.0951016-CDS-L-elsbetiae_contig11:20737..21004Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11 20738..21004 -
1691682833.2912812-CDS-L-elsbetiae_contig11:20737..210041691682833.2912812-CDS-L-elsbetiae_contig11:20737..21004Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11 20738..21004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11.894.1prot_L-elsbetiae_contig11.894.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11 19841..21004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11.894.1

>prot_L-elsbetiae_contig11.894.1 ID=prot_L-elsbetiae_contig11.894.1|Name=mRNA_L-elsbetiae_contig11.894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
GPHPAPPPGAPLAMPMNVPSHHLGGPLTHGVQPMPFPGGFRHGQQQQQPG
QAHNRLQPPRGGGPRGTPPQGPHGYAASPTMGPALPPQQLRGPGQQAEWA
ATSRQRAAAAAVAVASGWSNNPSVPSHGTP
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mRNA from alignment at L-elsbetiae_contig11:19840..21004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11.894.1 ID=mRNA_L-elsbetiae_contig11.894.1|Name=mRNA_L-elsbetiae_contig11.894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1165bp|location=Sequence derived from alignment at L-elsbetiae_contig11:19840..21004- (Laminarionema elsbetiae ELsaHSoW15)
GGCCCGCATCCTGCTCCGCCACCGGGGGCACCGTTAGCGATGCCCATGAA
TGTCCCCTCCCACCACCTCGGCGGCCCCCTGACGCATGGGGTGCAACCCA
TGCCCTTCCCCGGGGGGTTCAGGCACGGGCAGCAGCAGCAGCAGCCCGGG
CAGGCCCACAACCGTCTCCAGCCCCCACGGGGCGGTGGCCCGCGCGGCAC
GCCGCCACAGGGACCCCACGGCTATGCGGCTTCTCCCACGATGGGGCCGG
CCTTGCCGCCTCAGCAGGTGAGATCGGCGGCGGCCGGCGACTCTTGTGCC
CGCCGCGCGCGCGTTTGTTTTGGCACGACTTTGTCGTCGTCGGTTTGAGG
AACGGGGTTTATTGTTCGTTTGGCATCCGCCGGCGGTGGTGTCTTGTGCC
AGTCGTTGGGAGAAGAGTCGAGTCATGCCGTTGTGTGTGAGTGAGTGAGT
GAGTGTTGTGTGGTCGCGTTAAATAGAAATCAGTGAATCAAAAATGTTGG
TTCAGTAGAGTAGAAAAACACCTTTTTGCTGGAAGCGCGTGAGGTGGTGC
AAACTGCACGCATATCAGATCGGCCTGTGGGATTTTTACCCGTTTGTAGC
TAGGCGTCGCTCTCTCGGTCGTCTTGGCTTTTTGGTTGAAAACACTGGAG
AATGAGGGTTGTAGAGGTACGCCAATTGACCTGCTTGTTGCGTGGTTGCG
ATTGGTGATGGCTATGTCTGTCGGTGACATCACTGATGGTTAGTTGTGTC
GATCGCGTCCGAATGCGAATTTAGTATATAGCGCGAGTTTTGTGTGTCGT
GTCGTGACAATTTCCTGCTTGGGGTCGGCTCTGCTTTGCTGTTTTCAATC
GTCATTTCCGTGCAACTGCGCGTGTTTTCTAAGGGTGCCATGTATGTTTA
TATGCTCCACCACCGCCACTGCAGCAGTTGAATTATGTTTGCCCGGCGGC
GGGCACCAAGCCTTAGAATACAACCTCACCCTTGCACGGATCCCCCCCTC
CCTCTTGCATCGTGTACGCACTCTGTATATTGGTTGCACAGCTCCGAGGT
CCCGGGCAGCAAGCAGAGTGGGCAGCGACATCACGGCAACGCGCCGCGGC
GGCAGCAGTAGCCGTGGCCAGCGGCTGGAGCAATAACCCAAGCGTACCCT
CACACGGCACCCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11:19840..21004-

>mRNA_L-elsbetiae_contig11.894.1 ID=mRNA_L-elsbetiae_contig11.894.1|Name=mRNA_L-elsbetiae_contig11.894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig11:19840..21004- (Laminarionema elsbetiae ELsaHSoW15)
GGCCCGCATCCTGCTCCGCCACCGGGGGCACCGTTAGCGATGCCCATGAA
TGTCCCCTCCCACCACCTCGGCGGCCCCCTGACGCATGGGGTGCAACCCA
TGCCCTTCCCCGGGGGGTTCAGGCACGGGCAGCAGCAGCAGCAGCCCGGG
CAGGCCCACAACCGTCTCCAGCCCCCACGGGGCGGTGGCCCGCGCGGCAC
GCCGCCACAGGGACCCCACGGCTATGCGGCTTCTCCCACGATGGGGCCGG
CCTTGCCGCCTCAGCAGGGCCCGCATCCTGCTCCGCCACCGGGGGCACCG
TTAGCGATGCCCATGAATGTCCCCTCCCACCACCTCGGCGGCCCCCTGAC
GCATGGGGTGCAACCCATGCCCTTCCCCGGGGGGTTCAGGCACGGGCAGC
AGCAGCAGCAGCCCGGGCAGGCCCACAACCGTCTCCAGCCCCCACGGGGC
GGTGGCCCGCGCGGCACGCCGCCACAGGGACCCCACGGCTATGCGGCTTC
TCCCACGATGGGGCCGGCCTTGCCGCCTCAGCAGCTCCGAGGTCCCGGGC
AGCAAGCAGAGTGGGCAGCGACATCACGGCAACGCGCCGCGGCGGCAGCA
GTAGCCGTGGCCAGCGGCTGGAGCAATAACCCAAGCGTACCCTCACACGG
CACCCCCCTCCGAGGTCCCGGGCAGCAAGCAGAGTGGGCAGCGACATCAC
GGCAACGCGCCGCGGCGGCAGCAGTAGCCGTGGCCAGCGGCTGGAGCAAT
AACCCAAGCGTACCCTCACACGGCACCCCC
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