mRNA_L-elsbetiae_contig11.893.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11.893.1
Unique NamemRNA_L-elsbetiae_contig11.893.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig11.893.1 vs. uniprot
Match: A0A6H5K1P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P9_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.800e-44
Identity = 167/301 (55.48%), Postives = 184/301 (61.13%), Query Frame = 1 
Query:    1 MQNGELSAAARVFVPTNISPAKPLANGGGASGGSTPVRGPGATPPR------PPAAAASGSSP----------GSRPSXXXXXXXXXXXXXXXPLADGAFGSSWGGMGGVGNVTSXXXXXXXXXXXX-----GNLWGSLGIDVGGAGVPASGQAIWGGSSLLDAVGXXXXXXXXS-------TGEGVSLLLAPSTGSAVQAPIDAASLPPFSSS-PLDLSSWGVGGXXXXXXXXXXXXXXXXXXXXXGGITSSLSGLSLDEAANSIIGGKAGEQHQQQ----------GAFGPASGLSSWG 786
            +QNGELSAAA+ FVP NISPAKP  +    +GG TPV  PGA   R      P A A +  +P               XXXXXXXXXXXXXXXPLAD AFGSSWG MG       XXXXXXXXXXXX      NLWGSLGIDVGGAGVP SGQAIWG SSLLD+VG    XXXX         G+G+SLLL PS  S VQAP DA SLPPFSSS PLDL+SWGVG                      GG+ SSLSGLS+D++A+ ++GGKAGEQ Q            G FG AS LSSWG
Sbjct: 1348 VQNGELSAAAQEFVP-NISPAKPATS----TGGGTPVSRPGAAAARSAGVETPTAVARAAQTPPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLADVAFGSSWGSMGXXXXXXXXXXXXXXXXXXXXXXXXSNLWGSLGIDVGGAGVPPSGQAIWGSSSLLDSVGGDGGXXXXXXXXXXAIAGDGLSLLLGPSNVSTVQAPADATSLPPFSSSCPLDLASWGVG--------RRGGAGALAGDEFVGGLASSLSGLSMDDSASGVLGGKAGEQPQXXXXXXXXXXXGGVFGSASSLSSWG 1635
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11.893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1P9_9PHAE1.800e-4455.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11contigL-elsbetiae_contig11:18785..19573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_003990.1
Exons1
Model size789
Cds size789
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815315.3845677-CDS-L-elsbetiae_contig11:18784..195731622815315.3845677-CDS-L-elsbetiae_contig11:18784..19573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11 18785..19573 -
1691682833.4681313-CDS-L-elsbetiae_contig11:18784..195731691682833.4681313-CDS-L-elsbetiae_contig11:18784..19573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11 18785..19573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11.893.1prot_L-elsbetiae_contig11.893.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11 18785..19573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11.893.1

>prot_L-elsbetiae_contig11.893.1 ID=prot_L-elsbetiae_contig11.893.1|Name=mRNA_L-elsbetiae_contig11.893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=263bp
MQNGELSAAARVFVPTNISPAKPLANGGGASGGSTPVRGPGATPPRPPAA
AASGSSPGSRPSPAKGGGGGAGTGLGLPLADGAFGSSWGGMGGVGNVTSS
AADASDDGGGGGNLWGSLGIDVGGAGVPASGQAIWGGSSLLDAVGGGGGG
GAASTGEGVSLLLAPSTGSAVQAPIDAASLPPFSSSPLDLSSWGVGGGGG
GGGDGERAGGAGASAGDGGGITSSLSGLSLDEAANSIIGGKAGEQHQQQG
AFGPASGLSSWG*
back to top

mRNA from alignment at L-elsbetiae_contig11:18785..19573-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11.893.1 ID=mRNA_L-elsbetiae_contig11.893.1|Name=mRNA_L-elsbetiae_contig11.893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=789bp|location=Sequence derived from alignment at L-elsbetiae_contig11:18785..19573- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGAACGGCGAGCTATCCGCAGCGGCGCGTGTGTTCGTCCCCACGAA
CATCTCCCCGGCCAAGCCGCTCGCGAACGGCGGCGGTGCCAGCGGCGGCA
GCACCCCGGTCCGCGGACCCGGAGCAACGCCTCCCCGGCCCCCGGCGGCG
GCCGCTTCCGGCAGCAGTCCCGGCTCGAGGCCCTCTCCGGCGAAGGGCGG
CGGGGGCGGGGCGGGGACCGGCCTGGGGCTCCCGCTTGCTGACGGCGCGT
TCGGGTCGTCGTGGGGAGGGATGGGAGGCGTCGGCAACGTGACCTCTTCT
GCGGCCGATGCGTCGGATGACGGCGGCGGCGGCGGCAACCTTTGGGGCTC
GCTTGGGATTGATGTGGGTGGGGCGGGGGTTCCCGCCAGTGGCCAGGCGA
TCTGGGGCGGCAGCTCGCTGCTGGACGCCGTGGGAGGCGGGGGTGGGGGC
GGAGCCGCGAGTACGGGGGAAGGGGTGTCCCTCCTGTTGGCCCCATCGAC
GGGGTCCGCGGTGCAGGCTCCGATTGATGCCGCCTCGTTGCCGCCGTTCT
CTTCGTCCCCGCTGGACCTTTCCTCTTGGGGTGTGGGAGGAGGAGGCGGC
GGCGGCGGCGACGGTGAGCGTGCCGGAGGCGCTGGGGCGTCGGCCGGGGA
CGGCGGCGGGATTACTTCCTCGCTCTCTGGACTGTCGCTGGACGAAGCCG
CGAACAGCATTATCGGGGGAAAGGCCGGCGAGCAACATCAGCAGCAGGGA
GCGTTTGGTCCCGCAAGCGGGCTCAGTAGCTGGGGTTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11:18785..19573-

>mRNA_L-elsbetiae_contig11.893.1 ID=mRNA_L-elsbetiae_contig11.893.1|Name=mRNA_L-elsbetiae_contig11.893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1578bp|location=Sequence derived from alignment at L-elsbetiae_contig11:18785..19573- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGAACGGCGAGCTATCCGCAGCGGCGCGTGTGTTCGTCCCCACGAA
CATCTCCCCGGCCAAGCCGCTCGCGAACGGCGGCGGTGCCAGCGGCGGCA
GCACCCCGGTCCGCGGACCCGGAGCAACGCCTCCCCGGCCCCCGGCGGCG
GCCGCTTCCGGCAGCAGTCCCGGCTCGAGGCCCTCTCCGGCGAAGGGCGG
CGGGGGCGGGGCGGGGACCGGCCTGGGGCTCCCGCTTGCTGACGGCGCGT
TCGGGTCGTCGTGGGGAGGGATGGGAGGCGTCGGCAACGTGACCTCTTCT
GCGGCCGATGCGTCGGATGACGGCGGCGGCGGCGGCAACCTTTGGGGCTC
GCTTGGGATTGATGTGGGTGGGGCGGGGGTTCCCGCCAGTGGCCAGGCGA
TCTGGGGCGGCAGCTCGCTGCTGGACGCCGTGGGAGGCGGGGGTGGGGGC
GGAGCCGCGAGTACGGGGGAAGGGGTGTCCCTCCTGTTGGCCCCATCGAC
GGGGTCCGCGGTGCAGGCTCCGATTGATGCCGCCTCGTTGCCGCCGTTCT
CTTCGTCCCCGCTGGACCTTTCCTCTTGGGGTGTGGGAGGAGGAGGCGGC
GGCGGCGGCGACGGTGAGCGTGCCGGAGGCGCTGGGGCGTCGGCCGGGGA
CGGCGGCGGGATTACTTCCTCGCTCTCTGGACTGTCGCTGGACGAAGCCG
CGAACAGCATTATCGGGGGAAAGGCCGGCGAGCAACATCAGCAGCAGGGA
GCGTTTGGTCCCGCAAGCGGGCTCAGTAGCTGGGGTTGAATGCAGAACGG
CGAGCTATCCGCAGCGGCGCGTGTGTTCGTCCCCACGAACATCTCCCCGG
CCAAGCCGCTCGCGAACGGCGGCGGTGCCAGCGGCGGCAGCACCCCGGTC
CGCGGACCCGGAGCAACGCCTCCCCGGCCCCCGGCGGCGGCCGCTTCCGG
CAGCAGTCCCGGCTCGAGGCCCTCTCCGGCGAAGGGCGGCGGGGGCGGGG
CGGGGACCGGCCTGGGGCTCCCGCTTGCTGACGGCGCGTTCGGGTCGTCG
TGGGGAGGGATGGGAGGCGTCGGCAACGTGACCTCTTCTGCGGCCGATGC
GTCGGATGACGGCGGCGGCGGCGGCAACCTTTGGGGCTCGCTTGGGATTG
ATGTGGGTGGGGCGGGGGTTCCCGCCAGTGGCCAGGCGATCTGGGGCGGC
AGCTCGCTGCTGGACGCCGTGGGAGGCGGGGGTGGGGGCGGAGCCGCGAG
TACGGGGGAAGGGGTGTCCCTCCTGTTGGCCCCATCGACGGGGTCCGCGG
TGCAGGCTCCGATTGATGCCGCCTCGTTGCCGCCGTTCTCTTCGTCCCCG
CTGGACCTTTCCTCTTGGGGTGTGGGAGGAGGAGGCGGCGGCGGCGGCGA
CGGTGAGCGTGCCGGAGGCGCTGGGGCGTCGGCCGGGGACGGCGGCGGGA
TTACTTCCTCGCTCTCTGGACTGTCGCTGGACGAAGCCGCGAACAGCATT
ATCGGGGGAAAGGCCGGCGAGCAACATCAGCAGCAGGGAGCGTTTGGTCC
CGCAAGCGGGCTCAGTAGCTGGGGTTGA
back to top