mRNA_L-elsbetiae_contig10914.831.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10914.831.1
Unique NamemRNA_L-elsbetiae_contig10914.831.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10914.831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10914contigL-elsbetiae_contig10914:2757..4489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815310.0787816-CDS-L-elsbetiae_contig10914:2756..28731622815310.0787816-CDS-L-elsbetiae_contig10914:2756..2873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10914 2757..2873 -
1691682830.1908882-CDS-L-elsbetiae_contig10914:2756..28731691682830.1908882-CDS-L-elsbetiae_contig10914:2756..2873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10914 2757..2873 -
1622815310.0935895-CDS-L-elsbetiae_contig10914:4348..44891622815310.0935895-CDS-L-elsbetiae_contig10914:4348..4489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10914 4349..4489 -
1691682830.1998737-CDS-L-elsbetiae_contig10914:4348..44891691682830.1998737-CDS-L-elsbetiae_contig10914:4348..4489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10914 4349..4489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10914.831.1prot_L-elsbetiae_contig10914.831.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10914 2757..4489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10914.831.1

>prot_L-elsbetiae_contig10914.831.1 ID=prot_L-elsbetiae_contig10914.831.1|Name=mRNA_L-elsbetiae_contig10914.831.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
ARPRRAHNTNTDPVSQMDSLDGGFFTVKSRSGDPTTEDLHARTSQPKRFN
SGKAYGLRGDRRSGDAPPPSSAAAAAAAAAGDALAE
back to top

mRNA from alignment at L-elsbetiae_contig10914:2757..4489-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10914.831.1 ID=mRNA_L-elsbetiae_contig10914.831.1|Name=mRNA_L-elsbetiae_contig10914.831.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1733bp|location=Sequence derived from alignment at L-elsbetiae_contig10914:2757..4489- (Laminarionema elsbetiae ELsaHSoW15)
GCCAGGCCTCGCCGCGCTCACAACACGAACACGGACCCTGTGTCCCAAAT
GGATTCTTTAGATGGTGGCTTCTTCACCGTGAAAAGTCGCAGCGGTGACC
CCACAACAGAGGACCTCCATGCTAGGACATCGCAACCGAAGGTGTGTGTG
AGACACACGACGGAAAGAAGGGGGTGGGTGTTGTTGTGGGAAACAGGTTG
TGGCATCGCGCTTTTCTTCGACCCGTCTCTGCGCGTATGCCTCATGTTCG
GAACGGGCTCTGCTGGATTATTTGTGGCAACACAATTAATGTTAGCTGCT
GAATCTACTTAGCCCTCGCAGAGCGCGGCTGCTGTTTGGGATGGGAAATT
CAAACGGCGTGAAACTCACAACAGTTAGATAGTGTTTGTGTGTGTGGCAC
ACCCAGCAATAATCGCGTCAGGGCAAACTGCCAGGACACAGGCAGTTTGC
TGCTCTCGCCAGGATTCTCTTTGCTTGGGCGGGCACCATTGCGAGCAAAA
GTTGTTCTGTGATCTACATTTGTATATATCTAGGCTGCGAGGATAAAAAG
AGCCCCCATGTTTGCCGAACGATGACGGTTTGGGGCTCAGCGACGGCAGC
GAGGCCCTCCATAGAGCTCCATAGTGGGAACAACGCTGGTCCATCCTGGC
AGCAGCATCGTATCTGGCTAAAGGCGCATGTATATAGCTTGCTGTTGGAA
AAACTCGCAACTGCCTCACAAGCTGGGCAACAGCGGGTGAACGCGACGCA
GCAAACCAGCCCACATCCCTTTGAACACGGCCATCTAGATATCTGTTGTA
TCGATCAGCCGCAGGCGCACTTGGTAGGATAGCCACCCTGCCGCCGCCGT
CGTTTCCTTCGAGTTTGTTATTTCCCGATCGTCGTTAGGTTCGGTTCGGT
TTGGTTCGATTCGATTCGATCGGGTACAGCAGACAGCAGTGTACCGTAGG
TGACACAAGATATCACACCCCCTGGACATGTTTCAAAGCTCGGTTCCTCC
CCAGCAAGAAAGAAGAGCGCCACTGCCGAAAGGGGTGGCGTTGGAAATAT
CTAGTCGAGGGCTGTCCAAAAATGTGTCGTTTGGTGCTGGCACCCTCTTC
GTTACGGAGTAATGGAGCTCTAAAAGTCGGTCCAGGGGGTGTGGTATCTT
GTGTCACCTACGGTAGTGATGGACCGCCGAGGAACACCTTGTGAGCGCAG
CTTGCCGGAAGCCGAAATGCTACTCAGTTGCTGAAAACTGCGTTTAGATA
CCGTAGGTGACACAAGATACCACACCCCCTGGACCGACTTTTAGAGCTCC
ATTACCCCGTAACGAAGAGGGTGCTAGCACCAAACGACACATTTTCGGAC
AGCCCTCGACTAGATATTTCCAACGCCACCCCTTTCTTCCGGCAGTGGCG
CTCTTCTTGCTGGGGAGGAACCGAGCATTGAAAATATGTCCAGGGGGTGT
GGTATCTTGTGTCATCTACGGTATGTATTGTAAGAGATAATGAATGTATG
TGTGTACAACAAGACTTCCTCCTCGTTGAGTGCATGCAACACACACCCCT
TTTCCCGCCCCCCCGCCCGACCTCGTTTTCCCGCCTGCCTGCATACACCC
ACCGGCCGAACTAAAGCGTTTCAACAGCGGGAAGGCGTACGGCCTGAGGG
GCGACAGGCGGAGCGGGGACGCTCCTCCCCCGTCCTCGGCCGCCGCCGCC
GCCGCCGCTGCAGCTGGCGACGCCCTCGCGGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10914:2757..4489-

>mRNA_L-elsbetiae_contig10914.831.1 ID=mRNA_L-elsbetiae_contig10914.831.1|Name=mRNA_L-elsbetiae_contig10914.831.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig10914:2757..4489- (Laminarionema elsbetiae ELsaHSoW15)
GCCAGGCCTCGCCGCGCTCACAACACGAACACGGACCCTGTGTCCCAAAT
GGATTCTTTAGATGGTGGCTTCTTCACCGTGAAAAGTCGCAGCGGTGACC
CCACAACAGAGGACCTCCATGCTAGGACATCGCAACCGAAGGCCAGGCCT
CGCCGCGCTCACAACACGAACACGGACCCTGTGTCCCAAATGGATTCTTT
AGATGGTGGCTTCTTCACCGTGAAAAGTCGCAGCGGTGACCCCACAACAG
AGGACCTCCATGCTAGGACATCGCAACCGAAGCGTTTCAACAGCGGGAAG
GCGTACGGCCTGAGGGGCGACAGGCGGAGCGGGGACGCTCCTCCCCCGTC
CTCGGCCGCCGCCGCCGCCGCCGCTGCAGCTGGCGACGCCCTCGCGGAGC
GTTTCAACAGCGGGAAGGCGTACGGCCTGAGGGGCGACAGGCGGAGCGGG
GACGCTCCTCCCCCGTCCTCGGCCGCCGCCGCCGCCGCCGCTGCAGCTGG
CGACGCCCTCGCGGAG
back to top