mRNA_L-elsbetiae_contig10913.830.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10913.830.1
Unique NamemRNA_L-elsbetiae_contig10913.830.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10913.830.1 vs. uniprot
Match: D7FZE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE8_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 2.340e-5
Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = -2 
Query:  312 EKQNAKMRFEFPPQESRTLAQMFGFIE 392
            EKQNAKMRFEFPPQ+++TLAQMFGFIE
Sbjct: 1882 EKQNAKMRFEFPPQKNQTLAQMFGFIE 1908
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BLAST of mRNA_L-elsbetiae_contig10913.830.1 vs. uniprot
Match: A0A6H5L5M8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M8_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 5.740e-5
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = -2 
Query:  300 EKQNAKMRFEFPPQESRTLAQMFGFIEVRAG 392
            EKQNAKMRFEFPPQ+++TLAQMFG +EV  G
Sbjct: 1015 EKQNAKMRFEFPPQKNQTLAQMFGVVEVFNG 1045
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10913.830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZE8_ECTSI2.340e-588.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M8_9PHAE5.740e-577.42ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10913contigL-elsbetiae_contig10913:5583..5977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size397
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815309.9385796-CDS-L-elsbetiae_contig10913:5582..59751622815309.9385796-CDS-L-elsbetiae_contig10913:5582..5975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10913 5583..5975 +
1691682830.111892-CDS-L-elsbetiae_contig10913:5582..59751691682830.111892-CDS-L-elsbetiae_contig10913:5582..5975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10913 5583..5975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10913.830.1prot_L-elsbetiae_contig10913.830.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10913 5583..5975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10913.830.1

>prot_L-elsbetiae_contig10913.830.1 ID=prot_L-elsbetiae_contig10913.830.1|Name=mRNA_L-elsbetiae_contig10913.830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
HFFPVFNFFYLVWFLNNLKLDYRLNFIFFLAYLSLLGLAITTMAGIPAES
MYFKSYDKKRHWTNCCARTICTRYVRTTAPPCPTHLLGQAVGGGCRMLVG
PALTSMKPNICARVRLSCGGNSNRIFAFCFS
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mRNA from alignment at L-elsbetiae_contig10913:5583..5977+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10913.830.1 ID=mRNA_L-elsbetiae_contig10913.830.1|Name=mRNA_L-elsbetiae_contig10913.830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=395bp|location=Sequence derived from alignment at L-elsbetiae_contig10913:5583..5977+ (Laminarionema elsbetiae ELsaHSoW15)
CATTTTTTCCCAGTCTTCAATTTTTTTTATCTCGTGTGGTTCCTAAATAA
CTTGAAATTAGACTACCGTCTTAACTTTATTTTTTTCTTAGCCTATCTTT
CGCTCCTTGGTCTGGCGATCACTACGATGGCTGGAATTCCGGCGGAATCG
ATGTATTTCAAAAGTTATGACAAAAAACGTCATTGGACAAATTGTTGTGC
ACGGACCATATGTACGAGGTATGTGCGTACCACAGCTCCACCTTGTCCAA
CGCATTTGCTCGGTCAGGCTGTCGGTGGTGGGTGCCGGATGCTGGTGGGT
CCTGCCCTTACCTCGATGAAGCCGAACATCTGCGCCAGGGTCCGGCTCTC
CTGCGGGGGGAACTCGAACCGCATCTTCGCGTTCTGCTTCTCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10913:5583..5977+

>mRNA_L-elsbetiae_contig10913.830.1 ID=mRNA_L-elsbetiae_contig10913.830.1|Name=mRNA_L-elsbetiae_contig10913.830.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig10913:5583..5977+ (Laminarionema elsbetiae ELsaHSoW15)
CATTTTTTCCCAGTCTTCAATTTTTTTTATCTCGTGTGGTTCCTAAATAA
CTTGAAATTAGACTACCGTCTTAACTTTATTTTTTTCTTAGCCTATCTTT
CGCTCCTTGGTCTGGCGATCACTACGATGGCTGGAATTCCGGCGGAATCG
ATGTATTTCAAAAGTTATGACAAAAAACGTCATTGGACAAATTGTTGTGC
ACGGACCATATGTACGAGGTATGTGCGTACCACAGCTCCACCTTGTCCAA
CGCATTTGCTCGGTCAGGCTGTCGGTGGTGGGTGCCGGATGCTGGTGGGT
CCTGCCCTTACCTCGATGAAGCCGAACATCTGCGCCAGGGTCCGGCTCTC
CTGCGGGGGGAACTCGAACCGCATCTTCGCGTTCTGCTTCTCCCATTTTT
TCCCAGTCTTCAATTTTTTTTATCTCGTGTGGTTCCTAAATAACTTGAAA
TTAGACTACCGTCTTAACTTTATTTTTTTCTTAGCCTATCTTTCGCTCCT
TGGTCTGGCGATCACTACGATGGCTGGAATTCCGGCGGAATCGATGTATT
TCAAAAGTTATGACAAAAAACGTCATTGGACAAATTGTTGTGCACGGACC
ATATGTACGAGGTATGTGCGTACCACAGCTCCACCTTGTCCAACGCATTT
GCTCGGTCAGGCTGTCGGTGGTGGGTGCCGGATGCTGGTGGGTCCTGCCC
TTACCTCGATGAAGCCGAACATCTGCGCCAGGGTCCGGCTCTCCTGCGGG
GGGAACTCGAACCGCATCTTCGCGTTCTGCTTCTCC
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