mRNA_L-elsbetiae_contig10912.828.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10912.828.1
Unique NamemRNA_L-elsbetiae_contig10912.828.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10912.828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10912contigL-elsbetiae_contig10912:1925..2485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size561
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10912.828.1prot_L-elsbetiae_contig10912.828.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10912 1964..2434 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815309.8691602-UTR-L-elsbetiae_contig10912:1924..19631622815309.8691602-UTR-L-elsbetiae_contig10912:1924..1963Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10912 1925..1963 +
1691682830.082424-UTR-L-elsbetiae_contig10912:1924..19631691682830.082424-UTR-L-elsbetiae_contig10912:1924..1963Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10912 1925..1963 +
1622815309.895303-UTR-L-elsbetiae_contig10912:2434..24851622815309.895303-UTR-L-elsbetiae_contig10912:2434..2485Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10912 2435..2485 +
1691682830.1010084-UTR-L-elsbetiae_contig10912:2434..24851691682830.1010084-UTR-L-elsbetiae_contig10912:2434..2485Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10912 2435..2485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815309.8829458-CDS-L-elsbetiae_contig10912:1963..24341622815309.8829458-CDS-L-elsbetiae_contig10912:1963..2434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10912 1964..2434 +
1691682830.0908554-CDS-L-elsbetiae_contig10912:1963..24341691682830.0908554-CDS-L-elsbetiae_contig10912:1963..2434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10912 1964..2434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10912.828.1

>prot_L-elsbetiae_contig10912.828.1 ID=prot_L-elsbetiae_contig10912.828.1|Name=mRNA_L-elsbetiae_contig10912.828.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
MYVCVHAYTQNLRTFSPARVGRVSFTEQKKKTKKVPNPDTQTDRQTDTRT
DKTDRQTDTLEQILRFYTNRVLLHPPTRVRVRESRDTRSMYSTACFALSF
SLASPTTKYYNVLRVLISTPHKFQISTTAQQLTLFISTPQTSTTYVYIIY
HIYLLI*
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mRNA from alignment at L-elsbetiae_contig10912:1925..2485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10912.828.1 ID=mRNA_L-elsbetiae_contig10912.828.1|Name=mRNA_L-elsbetiae_contig10912.828.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=561bp|location=Sequence derived from alignment at L-elsbetiae_contig10912:1925..2485+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCGTTTTCCAATATTCGCAAACAAATATCGTGCACATATGTATGTATG
TGTGCATGCATACACGCAAAACTTGAGAACTTTCTCACCAGCCAGGGTCG
GCCGTGTCAGTTTCACAGAACAAAAGAAAAAGACGAAGAAAGTTCCGAAC
CCGGACACACAGACAGACAGACAGACAGATACCAGAACAGACAAAACAGA
CAGACAGACAGACACACTGGAGCAAATACTAAGATTTTACACAAACCGTG
TACTACTCCATCCACCAACCAGGGTGAGGGTACGGGAGTCACGGGATACA
CGCAGTATGTATAGCACAGCATGTTTTGCCCTTTCTTTCTCCTTGGCCAG
CCCAACAACTAAATATTACAATGTACTTCGTGTGCTTATTTCGACACCAC
ACAAATTTCAGATTTCGACCACGGCCCAACAACTAACTCTGTTCATTTCG
ACACCACAAACTTCGACTACATATGTATATATTATATACCATATATATTT
ACTCATCTAAATGTTTGAACCAATAAAGAGACGGATACCGCCGTAGAGGT
GCTACACCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10912:1925..2485+

>mRNA_L-elsbetiae_contig10912.828.1 ID=mRNA_L-elsbetiae_contig10912.828.1|Name=mRNA_L-elsbetiae_contig10912.828.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig10912:1925..2485+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGTATGTGTGCATGCATACACGCAAAACTTGAGAACTTTCTCACC
AGCCAGGGTCGGCCGTGTCAGTTTCACAGAACAAAAGAAAAAGACGAAGA
AAGTTCCGAACCCGGACACACAGACAGACAGACAGACAGATACCAGAACA
GACAAAACAGACAGACAGACAGACACACTGGAGCAAATACTAAGATTTTA
CACAAACCGTGTACTACTCCATCCACCAACCAGGGTGAGGGTACGGGAGT
CACGGGATACACGCAGTATGTATAGCACAGCATGTTTTGCCCTTTCTTTC
TCCTTGGCCAGCCCAACAACTAAATATTACAATGTACTTCGTGTGCTTAT
TTCGACACCACACAAATTTCAGATTTCGACCACGGCCCAACAACTAACTC
TGTTCATTTCGACACCACAAACTTCGACTACATATGTATATATTATATAC
CATATATATTTACTCATCTAAATGTATGTATGTGTGCATGCATACACGCA
AAACTTGAGAACTTTCTCACCAGCCAGGGTCGGCCGTGTCAGTTTCACAG
AACAAAAGAAAAAGACGAAGAAAGTTCCGAACCCGGACACACAGACAGAC
AGACAGACAGATACCAGAACAGACAAAACAGACAGACAGACAGACACACT
GGAGCAAATACTAAGATTTTACACAAACCGTGTACTACTCCATCCACCAA
CCAGGGTGAGGGTACGGGAGTCACGGGATACACGCAGTATGTATAGCACA
GCATGTTTTGCCCTTTCTTTCTCCTTGGCCAGCCCAACAACTAAATATTA
CAATGTACTTCGTGTGCTTATTTCGACACCACACAAATTTCAGATTTCGA
CCACGGCCCAACAACTAACTCTGTTCATTTCGACACCACAAACTTCGACT
ACATATGTATATATTATATACCATATATATTTACTCATCTAA
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