mRNA_L-elsbetiae_contig10892.816.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10892.816.1
Unique NamemRNA_L-elsbetiae_contig10892.816.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10892.816.1 vs. uniprot
Match: D7G017_ECTSI (Tub domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G017_ECTSI)

HSP 1 Score: 345 bits (886), Expect = 6.660e-115
Identity = 165/173 (95.38%), Postives = 169/173 (97.69%), Query Frame = 1 
Query:    1 VVREACRERGQIRLTFTPGTGEENKPRAEDSEMMEARWFIHQQKARYYRPPPPSEDMVYCSLERHRGEHVTSFHLNRDDTGEFLLACSVDASLQGPMLFHTLQDTHLRELKDIPTSSDSAVYLGCMLPNLLGTEFRQLDHRVDPRDSDLMDYVKEKGRNELSAVVYEPNVMGR 519
            VVR+ACRERGQIRLTFT GTGEENKPRAEDSEM+EARWFIHQQKARYYRPPPPSEDMVYCSLERHRGEHVTSFHLNRDDTGEFLLACSVDA+LQGPMLFHTLQDTHLRELKDIPTSSDSAVYLGCM PNLLGTEFRQLDHRVDPRDS  M+YVKEKGRNELSAVVYEPNVMGR
Sbjct:  170 VVRDACRERGQIRLTFTAGTGEENKPRAEDSEMLEARWFIHQQKARYYRPPPPSEDMVYCSLERHRGEHVTSFHLNRDDTGEFLLACSVDANLQGPMLFHTLQDTHLRELKDIPTSSDSAVYLGCMFPNLLGTEFRQLDHRVDPRDSAAMEYVKEKGRNELSAVVYEPNVMGR 342
[Close]
BLAST of mRNA_L-elsbetiae_contig10892.816.1 vs. uniprot
Match: A0A836CGA0_9STRA (Tubby C-terminal-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA0_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.700e-44
Identity = 80/139 (57.55%), Postives = 98/139 (70.50%), Query Frame = 1 
Query:  103 EARWFIHQQKARYYRPPPPSEDMVYCSLERHRGEHVTSFHLNRDDTGEFLLACSVDASLQGPMLFHTLQDTHLRELKDIPTSSDSAVYLGCMLPNLLGTEFRQLDHRVDPRDSDLMDYVKEKGRNELSAVVYEPNVMGR 519
            EAR  I + KAR++  P   + MVYC L RHRG HVT+F L+RDDTGEFLLACS++A   GPM+FHT QD+HLR LKDI T+ DSA YLGCM+PN LGTEFR +D R  P         +  G+ E+ AVVY+ NV+GR
Sbjct:  106 EARRAIFEAKARFFTAPRADDGMVYCGLTRHRGRHVTAFALHRDDTGEFLLACSMEADGTGPMIFHTQQDSHLRMLKDITTAQDSASYLGCMVPNFLGTEFRLMDFRESP---------ERAGKYEVCAVVYDVNVLGR 235
[Close]
BLAST of mRNA_L-elsbetiae_contig10892.816.1 vs. uniprot
Match: A0A6V1UG96_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UG96_HETAK)

HSP 1 Score: 147 bits (372), Expect = 1.840e-39
Identity = 78/154 (50.65%), Postives = 101/154 (65.58%), Query Frame = 1 
Query:   88 DSEMMEARWFIHQQKARYYRPPPPSED-----MVYCSLERHRGEHVTSFHLNRDDTGEFLLACSVDASLQGPMLFHTLQDTHLRELKDIPTSSDSAVYLGCMLPNLLGTEFRQLDHRVDPRDSDLMDYVKEKGR-----NELSAVVYEPNVMGR 519
            D E+ +AR +IH+QK R+Y PP P+ +     +VYC +ER RG    +FHL R+DTGEFL A +V A   G  +FHTL+DTHLR +  IPT+ DSAVYLGC++P+LLGT F   +HR DP      D   ++GR     NEL+ V YE NVMGR
Sbjct:  103 DREVTDARRYIHEQKERFYLPPEPTVEGGEHQIVYCCVERRRGADSLAFHLLREDTGEFLCAATVAADRTGKFIFHTLRDTHLRPVDRIPTNQDSAVYLGCLVPSLLGTTFTLYNHRPDPHT----DLQTKQGRAAAVENELAYVSYETNVMGR 252
[Close]
BLAST of mRNA_L-elsbetiae_contig10892.816.1 vs. uniprot
Match: A0A5D6XV38_9STRA (PDZ domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV38_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.290e-37
Identity = 74/146 (50.68%), Postives = 97/146 (66.44%), Query Frame = 1 
Query:   88 DSEMMEARWFIHQQKARYYRPP--PPSEDMVYCSLERHRGEHVTSFHLNRDDTGEFLLACSVDASLQGPMLFHTLQDTHLRELKDIPTSSDSAVYLGCMLPNLLGTEFRQLDHRVDPRDSDLMDYVKEKGRNELSAVVYEPNVMGR 519
            D  +++A+ FIH+ K R+YRPP   P+ +++   +ER RGE VT+F+ +R+DTGEFLLACS      GP LFHTLQD+H R+ K +P S DSAVYLG M+PN LGTEF  LDH+             +K RNEL  +VY  NV+GR
Sbjct:  372 DMGILQAKQFIHEHKERFYRPPCRTPTGELILGCVERLRGETVTAFNFHREDTGEFLLACSCVNECTGPFLFHTLQDSHQRDFKSLPQSEDSAVYLGQMVPNFLGTEFTVLDHQ-------------QKRRNELGLLVYSSNVLGR 504
[Close]
BLAST of mRNA_L-elsbetiae_contig10892.816.1 vs. uniprot
Match: A0A067CRL2_SAPPC (PDZ domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CRL2_SAPPC)

HSP 1 Score: 141 bits (356), Expect = 5.600e-37
Identity = 69/138 (50.00%), Postives = 91/138 (65.94%), Query Frame = 1 
Query:  106 ARWFIHQQKARYYRPPPPSEDMVYCSLERHRGEHVTSFHLNRDDTGEFLLACSVDASLQGPMLFHTLQDTHLRELKDIPTSSDSAVYLGCMLPNLLGTEFRQLDHRVDPRDSDLMDYVKEKGRNELSAVVYEPNVMGR 519
            A+  I++ KAR+YRP     D+++  +ER+RG+ +TSFHL+R+DTGEFLLACS ++ L GP LFHTL+DTHLR  KD+P   DSAVY+G ++ N LGTEF  LDH                 R EL   VY+ NV+GR
Sbjct:  164 AKQCIYEHKARFYRPVETHCDLLFGCIERYRGDDITSFHLHREDTGEFLLACSCESDLSGPFLFHTLRDTHLRRWKDLPRGEDSAVYMGELVANFLGTEFHVLDH----------------ARRELGFFVYDSNVLGR 285
[Close]
BLAST of mRNA_L-elsbetiae_contig10892.816.1 vs. uniprot
Match: T0QH97_SAPDV (Tub domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QH97_SAPDV)

HSP 1 Score: 140 bits (353), Expect = 1.580e-36
Identity = 72/146 (49.32%), Postives = 93/146 (63.70%), Query Frame = 1 
Query:   88 DSEMMEARWFIHQQKARYYRP--PPPSEDMVYCSLERHRGEHVTSFHLNRDDTGEFLLACSVDASLQGPMLFHTLQDTHLRELKDIPTSSDSAVYLGCMLPNLLGTEFRQLDHRVDPRDSDLMDYVKEKGRNELSAVVYEPNVMGR 519
            + E+  A+  IH+ KAR+Y+P   P    ++   +ER+RG+ VTSFHL+R+DTGEFLLACS ++ L GP LFHTL+DTHLR  KD+P   D AVY+G ++ N LGTEFR LDH                 R EL   VYE NV+GR
Sbjct:  156 EREVCIAKQCIHEHKARFYQPLETPSDNGLLLGCIERYRGDDVTSFHLHREDTGEFLLACSCESDLSGPFLFHTLRDTHLRRWKDLPRGEDCAVYMGELVENFLGTEFRVLDH----------------ARRELGFFVYESNVLGR 285
[Close]
BLAST of mRNA_L-elsbetiae_contig10892.816.1 vs. uniprot
Match: K3X577_GLOUD (PDZ domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X577_GLOUD)

HSP 1 Score: 142 bits (358), Expect = 4.010e-36
Identity = 73/146 (50.00%), Postives = 97/146 (66.44%), Query Frame = 1 
Query:   88 DSEMMEARWFIHQQKARYYRPPPPS--EDMVYCSLERHRGEHVTSFHLNRDDTGEFLLACSVDASLQGPMLFHTLQDTHLRELKDIPTSSDSAVYLGCMLPNLLGTEFRQLDHRVDPRDSDLMDYVKEKGRNELSAVVYEPNVMGR 519
            D ++++A+ FIH+ K ++YR PP S   +++Y  +ER RGE VT+F+ +R+DTGEFL+ACS      G  LFHTLQD+HLR+ KD+P + DSAVYLG M PN LGTEF  LDH+             +K  NEL  +VY  NVMGR
Sbjct:  392 DLDIIQAKKFIHEHKEKFYRQPPASANNELIYGCIERIRGETVTAFNFHREDTGEFLMACSCVNEGTGVFLFHTLQDSHLRDFKDLPQNEDSAVYLGQMAPNFLGTEFTVLDHQ-------------QKRCNELGFLVYSSNVMGR 524
[Close]
BLAST of mRNA_L-elsbetiae_contig10892.816.1 vs. uniprot
Match: A0A1V9ZUF0_9STRA (ATP-binding Cassette (ABC) superfamily n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUF0_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.710e-35
Identity = 71/141 (50.35%), Postives = 92/141 (65.25%), Query Frame = 1 
Query:  106 ARWFIHQQKARYYRP--PPPSEDMVYCSLERHRGEHVTSFHLNRDDTGEFLLACSVDASLQGPMLFHTLQDTHLRELKDIPTSSDSAVYLGCMLPNLLGTEFRQLDHRV-DPRDSDLMDYVKEKGRNELSAVVYEPNVMGR 519
            A+ FIH+ KA YYR    P  + +++  +ERHRG+ VT+ HL+R+DTGEFLLACS +    G  +FHTL+D+HLR  KD+P S DSAVYLG M+PN LGTEFR LDH    PR              E++ +VYE N+ GR
Sbjct:  147 AKRFIHEHKAPYYRAITTPGRDGLLHGCIERHRGDEVTALHLHREDTGEFLLACSCECDYSGAFVFHTLRDSHLRRWKDLPRSEDSAVYLGQMVPNFLGTEFRVLDHATATPR--------------EVAFLVYEANLFGR 273
[Close]
BLAST of mRNA_L-elsbetiae_contig10892.816.1 vs. uniprot
Match: A0A8K1C842_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C842_PYTOL)

HSP 1 Score: 139 bits (349), Expect = 4.460e-35
Identity = 71/147 (48.30%), Postives = 98/147 (66.67%), Query Frame = 1 
Query:   85 EDSEMMEARWFIHQQKARYYRPPPP--SEDMVYCSLERHRGEHVTSFHLNRDDTGEFLLACSVDASLQGPMLFHTLQDTHLRELKDIPTSSDSAVYLGCMLPNLLGTEFRQLDHRVDPRDSDLMDYVKEKGRNELSAVVYEPNVMGR 519
            +D+++++A+ FIHQ K ++YRPP P  ++ +V   +ER  GE VT+F+ +R+DTGEFLLACS      G  +FHTLQD+HLR  +D+P S DSAVYLG M+PN LGTEF  LDH+             +K RNE+  + Y  NV+GR
Sbjct:  273 QDTDIIQAKKFIHQHKEKFYRPPAPLPNKQLVNGCVERLVGETVTAFNFHREDTGEFLLACSCLNEKTGVFVFHTLQDSHLRGFRDLPQSEDSAVYLGQMVPNFLGTEFTLLDHQ-------------QKRRNEIGFIEYSTNVLGR 406
[Close]
BLAST of mRNA_L-elsbetiae_contig10892.816.1 vs. uniprot
Match: A0A225X0F5_9STRA (ABC transporter n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X0F5_9STRA)

HSP 1 Score: 136 bits (342), Expect = 5.680e-34
Identity = 69/151 (45.70%), Postives = 98/151 (64.90%), Query Frame = 1 
Query:   82 AEDSEMMEARWFIHQQKARYYRPPPPSE-----DMVYCSLERHRGEHVTSFHLNRDDTGEFLLACSVDASLQGPMLFHTLQDTHLRELKDIPTSSDSAVYLGCMLPNLLGTEFRQLDHRVDPRDSDLMDYVKEKGRNELSAVVYEPNVMGR 519
            A D ++++AR FIHQ K R+YRPPP ++     +MV   +ER RGE VT+ + +R++TGEFLL+ S  +   GP +FHTL+D+HLR ++++P S DSAVYLG + P+ LGTEF   DH    +  D          NEL+ +VY  NV+GR
Sbjct:  357 ASDKDVVQARAFIHQHKERFYRPPPVTDGANPHEMVLGCVERLRGEFVTALNFHREETGEFLLSASCASDGSGPFIFHTLRDSHLRTMRELPQSEDSAVYLGRLEPSFLGTEFTLFDHHTSSQHHD----------NELAFLVYSANVLGR 497
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10892.816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7G017_ECTSI6.660e-11595.38Tub domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CGA0_9STRA1.700e-4457.55Tubby C-terminal-like domain-containing protein (F... [more]
A0A6V1UG96_HETAK1.840e-3950.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5D6XV38_9STRA2.290e-3750.68PDZ domain-containing protein n=1 Tax=Pythium bras... [more]
A0A067CRL2_SAPPC5.600e-3750.00PDZ domain-containing protein n=1 Tax=Saprolegnia ... [more]
T0QH97_SAPDV1.580e-3649.32Tub domain-containing protein n=1 Tax=Saprolegnia ... [more]
K3X577_GLOUD4.010e-3650.00PDZ domain-containing protein n=1 Tax=Globisporang... [more]
A0A1V9ZUF0_9STRA1.710e-3550.35ATP-binding Cassette (ABC) superfamily n=1 Tax=Ach... [more]
A0A8K1C842_PYTOL4.460e-3548.30Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A225X0F5_9STRA5.680e-3445.70ABC transporter n=1 Tax=Phytophthora megakarya Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10892contigL-elsbetiae_contig10892:419..5767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score347.4
Seed ortholog evalue3.8e-93
Seed eggNOG ortholog2880.D7G017
KEGG koko:K19600
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol binding
EggNOG OGsKOG2502@1,KOG2502@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Ec32 ortholog descriptionTubby, C-terminal
Ec32 orthologEc-22_003270.1
Exons5
Model size522
Cds size522
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10892.816.1prot_L-elsbetiae_contig10892.816.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10892 419..5767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815306.6007407-CDS-L-elsbetiae_contig10892:418..5101622815306.6007407-CDS-L-elsbetiae_contig10892:418..510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10892 419..510 +
1691682829.0774667-CDS-L-elsbetiae_contig10892:418..5101691682829.0774667-CDS-L-elsbetiae_contig10892:418..510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10892 419..510 +
1622815306.6132445-CDS-L-elsbetiae_contig10892:1645..17241622815306.6132445-CDS-L-elsbetiae_contig10892:1645..1724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10892 1646..1724 +
1691682829.087136-CDS-L-elsbetiae_contig10892:1645..17241691682829.087136-CDS-L-elsbetiae_contig10892:1645..1724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10892 1646..1724 +
1622815306.6234674-CDS-L-elsbetiae_contig10892:3263..33751622815306.6234674-CDS-L-elsbetiae_contig10892:3263..3375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10892 3264..3375 +
1691682829.095318-CDS-L-elsbetiae_contig10892:3263..33751691682829.095318-CDS-L-elsbetiae_contig10892:3263..3375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10892 3264..3375 +
1622815306.633864-CDS-L-elsbetiae_contig10892:4277..43541622815306.633864-CDS-L-elsbetiae_contig10892:4277..4354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10892 4278..4354 +
1691682829.106372-CDS-L-elsbetiae_contig10892:4277..43541691682829.106372-CDS-L-elsbetiae_contig10892:4277..4354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10892 4278..4354 +
1622815306.6509652-CDS-L-elsbetiae_contig10892:5605..57671622815306.6509652-CDS-L-elsbetiae_contig10892:5605..5767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10892 5606..5767 +
1691682829.124908-CDS-L-elsbetiae_contig10892:5605..57671691682829.124908-CDS-L-elsbetiae_contig10892:5605..5767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10892 5606..5767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10892.816.1

>prot_L-elsbetiae_contig10892.816.1 ID=prot_L-elsbetiae_contig10892.816.1|Name=mRNA_L-elsbetiae_contig10892.816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=174bp
VVREACRERGQIRLTFTPGTGEENKPRAEDSEMMEARWFIHQQKARYYRP
PPPSEDMVYCSLERHRGEHVTSFHLNRDDTGEFLLACSVDASLQGPMLFH
TLQDTHLRELKDIPTSSDSAVYLGCMLPNLLGTEFRQLDHRVDPRDSDLM
DYVKEKGRNELSAVVYEPNVMGR*
back to top

mRNA from alignment at L-elsbetiae_contig10892:419..5767+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10892.816.1 ID=mRNA_L-elsbetiae_contig10892.816.1|Name=mRNA_L-elsbetiae_contig10892.816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5349bp|location=Sequence derived from alignment at L-elsbetiae_contig10892:419..5767+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGTGCGGGAGGCGTGTCGAGAGCGGGGGCAAATCCGGCTGACCTTCAC
ACCGGGCACCGGGGAAGAGAACAAGCCGAGGGCAGAAGACAGGTGACGGT
AGCTGGGGTTGGACCGTATCCACAGTACCGTAGGTGACATAAGATAAGAC
ACCCCTTTGGCCGATATTGAAAGCTTGGTTACTCCGCAACGAATACGATT
CTAACCACAAACGCCACATTTTCGGACAGCTCTCGGCGAGATCTTTCCAA
CGCCGCCCTTTTCGGGACTGGCGCTCTGCTTGCTGTGGAGTACTTGAGCT
TTGAAAATCGGTCCAGGGGGTGTGTTATCTTATGTCGCCTACGGTAGCAG
TCAGTCCCCTGCACCATTTTCCAACTCTGAGTTTTCAGTTGATGGCGATT
CTAAGGCCGTTTCTTATCGCGGCGTCAGATACAATAATTCTCGCACCGAC
ATCTTTTGAAACCGTGTGCATTGGCCCGAGAATCGCAATCGGGCGCCGAT
TCCCCGAATATTCGGGCAAGAGAGCAAGCCAAGGGCAGAAGAAAGCTGAA
AGCAGGCGGGGGTTATTAAGGTTTTGACCGAAGGCGGGTAGGCGACGGAA
CTTCAAAGTGAAGGAATGCAGGCCCAAACTCTCCAAAGTACAAGATCTAC
CTGGGATAGCGGGAATACAAGACCTACATGCACCAGAGTACAGTAGGAAC
CTCTAAACCCGAACGCTGACCCCACCCCTTGGCACTATCATGGTACACTT
GCACCACCCTGTTTCTATCTATCTGTTCGCAACCCTATTGTATGCACCGT
AGATGACGCAAGATAACACACCCCCTCCGCCGATTTTCAAAGCTCAGTTA
CTCCGCAAGGAGGATGCTTGTAATACTTAACGACACGTTTTCGGACAGCT
CTTGATGAGACCTTTCCAACGCCGCCCTTGTCGAGGATGACACTCTTCTC
GCTGTCGAATACTTGAGCTTTGAAAATCGGTCAAGGGGGGTGTGTCATCT
TGTGTTGTAGTATACGGCAACCCCTTAACGCATCTCAGCGAAATGGTAGA
GGCTCGATGGTTCGTCCACCCTAACCCTAAACCTTAAACCCTAACCCCAT
CCCTAACCCGCATCTAACCCGCATCTCAGCGAGATGATGGAGGCTCGATG
GTTCGTCCACCCTAACCCTATCCCTAAACCCTAAACCCTAAACCCTATCC
CTAACCCGCATCTGACCCGCATCTCAGCGAGATGATGGAGGCTCGATGGT
TCATCCACCAGCAGAAGGCCCGCTACTACAGACCACCGCCACCGTCGGAA
GACATGGTGAGAGAGATTGAGAGGAGAAATAGAGTGTGGGCACGGTCGGG
TGCTGCATGTGGTATTGAATGTGAATCGCCTGGTGGGCAAAGAGAAATGC
GGCATAACCGTCGCGGCAAGTGCGTGACGTCACCCCTTACCCCTCACTCC
GGGGTAGGTACATGTAGATAGATTCATTCTTCTCGTCTGACTACATACCG
TAGGTGACACAAGATACCACACCCCCTGGACAGATTTTCAAAGAACGATT
CCTCCCCAGCGAGAAGAATGACAGTGTCGAAAGGGTTGGCGTTGGAAAGA
TATAGTCGAGGGCTGTCCGAAAATGTGTTGTTTGGAGCTGGCACCTTCTT
CGCTACGGAGTAATCGAGCTCTAAAGTTCGATCCAGGGGGTGTGGTATCT
TGTGTCACCTACGGACTTATGTCTGGAAGTTCTACTCTAACTTCAAGTAT
GAACGCAAGCACGCAGATTTTCATCCACCTGAACGGGGATGCTTCGTTAG
CGTCCCCTGGTTTCAGCGGTCTCGAGGCTTTCTGGCAGTATTTAGTCTAC
GCAGGGTTTTCATCCTTTCATCTTCAGCTAACATATGGGATAAAGTATGG
AAACCAGGAAAGGGGGGTCGGTGGTTGGGGTTAGGGTTAGGGTCATTTTC
CTAGATAAACTTAATTTCCGGCGTAGGCGGTCCTGGACACCGCGACAGCA
GGCAGTCTCGGGCCCCCAGCTGAACTGCCACCATTCCGCGTATATGCTGG
TATGTGATTTTTTTCGTTCGTTGGTCGCGACCTCGGAGGGAGGCCGCTTT
TTTCTATTTCCGTTATCTATTCCTGGGTTACCGTACCGTAATTGTGCGCG
GTCCATCGCACATCCCCTGGGCCGATTTTCAAAGCTCGATTCCTCCCCGG
CAAGAAGAGTGCCAGTGCCGAAAGGGTGGCGTTGGAAAATGTCACGTCGA
TACAATACAGTAGCACTGCTCGAAAACGTGCCGTTTGGTGCTGACACCCT
CTTCGCGACGAAGTTATCGAGCTCTATGAGTCACTCCAGGGGGTGCGCGA
TAGCCCCCGCGCAAATGACGGTAGTTTATAGACGCACCCGTTCGGCTTGG
CGTGTATGATTGGTTCAGTCCGCGTGTGGTCGTTCCCGGAGGCCGCTTTT
TTGTTTATATTGGTACCGGAATATCATGCGAAGGTTTGCACCCCCGTGTT
AGCGTTTTTCTATAGCGTATTTCTCCACCACCAGGAGGGTACCACTGCCG
AAAAGGGTGGTTTTCGAAACGTCTCGTCGGGGGCTTTCCAGAGAGGTATC
AGTTAGTGTTCGCACTCTCCTGGTTGTGGAGAAATACGCTTGTAGAAAAA
TGCCTTGACACGGGAGTGCGAACCTTCGCATGATTACGGTACTTCGAAGT
ATCGATTTATTTATTGGTTGGTTTATGCACACCGTTCGACTTAGCATGCA
TGTGTGAATGGCTCACTCGGCGTGGATGCGTGGGTGAGTGCAAACGATCG
ACCGGTTGTCTCGCTTGTTTTCGAATTGTGTTTTTGTCTTGGTAGGTGTA
CTGCTCCTTGGAGCGCCATCGCGGAGAGCACGTGACGTCATTCCACCTCA
ACAGAGACGACACGGGGGAGTTCCTGTTGGCGTGTTCGGTTGACGCTAGC
CTTCAGGGTAAGCAAGCAATATGTTGTATTGACACGCGAAATTGGTGTGC
TACAGGCGGTACTCAGTTGTCGTGTGTGTTTGATTGGTGTGACTTTGAGA
CACTCTTGTTTGGTGTGCTGCAAGACATGTTTGCAGCTGCAAGCCTCCTG
AAGTGAGCGAGTCAAGTTGTCTAGACTCGATGCCATTACATACACTGCTG
CTGGCGTCTTTGTTGCGGCTGCTGCTCCGTGGGGTTTGTTGTTTTATTCT
CATTCTCGGTGGCTCCTGTGTCAGTCTTATCCACATACAGTAGTAGACGA
CTGGTCAGGTGTCTTGGGTTTTATTGTTGCTAGCGTTCACATAGCGTGTA
CAGGGGAGCGAAGGGCTCCAGACTCGATATCTGTTTTATTATTGCTTTGC
TGGCCCTTCGGGTCCATTTTATTTTTCGTGACCTTTTCTTAGGAAGTGTA
AGTTAGCCTGTGACCACGGGAATTGACCGCATCAAGTGTTGGATGGATTA
GTACGGACATTGACAGGTACTGGATGGAGAGATCGGAAGGGCTTTTAATG
TGAAGACAACATACACACATACATAGCGTTCGGAGAGAGCAGGTTAAATT
ATCCCGGCTCGGTCTCGATGACGTTCCACACGCTGCTGCGATTTCTGCTC
TGTGGTGGTTTGGTCTCTTTGAAAGAAAAACGGTTCATCAAAAATGGAAC
ATAACCCACATTGGAGACGAGACTCCCGTGAGATTTCATAGGTATTCCAT
ATATGTAGTGACGTAATTTTGGTCCAGCCCAGTAGAAAAACACCTAACAA
TGTTGAACAAGTCCATCACCTCCCCTGCCGGGTCAAACAGCATGTTGTTT
TCTTATCATTCTGCGATCTGACTGGGGGATGTTCTGTGTTATATTGTTCT
TGTCCACAGGACCGATGCTGTTCCACACGCTGCAGGATACCCACCTCCGA
GAGCTCAAGGACATCCCCACCAGCTCAGACAGCGCCGTGAGTCGAGTACC
GTAGGTGACACAAGATACCACACCCCCTGGACATATTTTCAAAGCTCGAT
TCCCCCTCAGTAAGAAGAGTGCCAGTGCCGAAAGGGGGTGGCGCTGGAAA
GGCCTAGTCGAGGGCTGTCCGAAAATTTGTCTTTTGGTGCTGGAACCTTC
TTGGTCCCGGAGTAATGGTGCTCTACAATTCGATCCAAGGGGTGTGGTAT
CTTGTGTCACCTACGGTAGTCACCAAGTCAGTTTCGTTTCCACAGCAGTA
CTGCCGTAGGTACATGGCAAATGTGGAATGGCGGCAGTTAGAGCTCGTGA
CTGCCCGCTGGCACCAGCCTCGCCTCTCTGCGAGAACAGCAGCACGGGCG
TGGCGTGAAACCTCTTGATTGAAAGCTCAGACAGCGCCGTGAGTCGAATC
GTCAAGAAGTCAATTGCATTGCAATAGGCGGCCGAGACAAAAGATGCGGA
ATTGCGGCAGGCAGTTAGAGCTCGTGTCCGACCGCTGACACCAGGCTCTT
CGCACTAATAGATAGCAGCACCACAGCAGAAGTGGCGGGAGCCTCGTGAC
TGAAGGCCGTTTTTGTAACCGTCACACCGCGTCTTTGGTCGAAACAGGTC
GAGTGAAGCGCGTGTCTTCAGCTAGCTTTTTTATCGTATACTTCTAGCTT
TTGTTTTTTTATGACAAGCCCGCTCGCTGGATAGTCTTTACCCTAAAACT
GCGTTTTTCTATGCTTGGCGCGAGCATAAAGCATGTACATACAATGTATA
TCCCCAGATAACACCTCTTTTGTGACCAATCTGTGTATTGAATACTTGCA
CGTTGCTGCTTGTTTCGGCTTATTTCGCTCTCTAGTTGTGTGGCGGTTAC
GGGTATAGAATTAATTGTGTTGTTTCTCACATGAGCTCTCTATTGTTGAG
TCCAGAAATATCCATGGGGGCCCGTGGTCACAAAAACAGGGCACAGTCGA
CGCCGCTGAAGAAAAGTATCATTCCGCGAAAGGCGATCCTGCTGAAAAAT
TAAAAAAATATGCGTCCATGCTATCCATAAATCTAACGAGAAACTCTGTT
GTGCTTGTGTGTAGCACTTGTATTGCGGGTTAACTTTGCGTGCATGCGTT
CGTCTTTTTTTATACTATTTTTTATTCCATCAAAATCATGAAAATTATTT
ACTTGGGGTGCATGCTTTTTCCTTCTTTTTTTTCATCAAAAATCATGCAA
AAATCACCGTCTGTGTTCGTTTGTTGTGATGCTGCAGGTGTACTTAGGGT
GCATGCTTCCGAACTTGCTGGGAACCGAGTTCCGTCAGTTGGATCACCGT
GTCGACCCCCGAGACTCTGACCTCATGGACTACGTCAAGGAGAAGGGGAG
GAACGAGCTGTCAGCGGTGGTGTACGAGCCGAACGTGATGGGGAGGTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10892:419..5767+

>mRNA_L-elsbetiae_contig10892.816.1 ID=mRNA_L-elsbetiae_contig10892.816.1|Name=mRNA_L-elsbetiae_contig10892.816.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig10892:419..5767+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGTGCGGGAGGCGTGTCGAGAGCGGGGGCAAATCCGGCTGACCTTCAC
ACCGGGCACCGGGGAAGAGAACAAGCCGAGGGCAGAAGACAGGTTGTGCG
GGAGGCGTGTCGAGAGCGGGGGCAAATCCGGCTGACCTTCACACCGGGCA
CCGGGGAAGAGAACAAGCCGAGGGCAGAAGACAGCGAGATGATGGAGGCT
CGATGGTTCATCCACCAGCAGAAGGCCCGCTACTACAGACCACCGCCACC
GTCGGAAGACATGCGAGATGATGGAGGCTCGATGGTTCATCCACCAGCAG
AAGGCCCGCTACTACAGACCACCGCCACCGTCGGAAGACATGGTGTACTG
CTCCTTGGAGCGCCATCGCGGAGAGCACGTGACGTCATTCCACCTCAACA
GAGACGACACGGGGGAGTTCCTGTTGGCGTGTTCGGTTGACGCTAGCCTT
CAGGGTGTACTGCTCCTTGGAGCGCCATCGCGGAGAGCACGTGACGTCAT
TCCACCTCAACAGAGACGACACGGGGGAGTTCCTGTTGGCGTGTTCGGTT
GACGCTAGCCTTCAGGGACCGATGCTGTTCCACACGCTGCAGGATACCCA
CCTCCGAGAGCTCAAGGACATCCCCACCAGCTCAGACAGCGCCGACCGAT
GCTGTTCCACACGCTGCAGGATACCCACCTCCGAGAGCTCAAGGACATCC
CCACCAGCTCAGACAGCGCCGTGTACTTAGGGTGCATGCTTCCGAACTTG
CTGGGAACCGAGTTCCGTCAGTTGGATCACCGTGTCGACCCCCGAGACTC
TGACCTCATGGACTACGTCAAGGAGAAGGGGAGGAACGAGCTGTCAGCGG
TGGTGTACGAGCCGAACGTGATGGGGAGGTAAGTGTACTTAGGGTGCATG
CTTCCGAACTTGCTGGGAACCGAGTTCCGTCAGTTGGATCACCGTGTCGA
CCCCCGAGACTCTGACCTCATGGACTACGTCAAGGAGAAGGGGAGGAACG
AGCTGTCAGCGGTGGTGTACGAGCCGAACGTGATGGGGAGGTAA
back to top