mRNA_L-elsbetiae_contig10890.815.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10890.815.1
Unique NamemRNA_L-elsbetiae_contig10890.815.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10890.815.1 vs. uniprot
Match: D7FZ48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ48_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.380e-23
Identity = 63/138 (45.65%), Postives = 79/138 (57.25%), Query Frame = 1
Query:    4 ECDFDGRSTASPLRDAGVPSPTSP----PPETVSAGSQCHFTFQGLRSAGQGCELRDFAAWARFFVDSPNAAVVEKSAGPLEVDAAGRAHAAVTYPSMLNIWPEVYNVDSIRVIEVAVVVEVRSSDGEFVYTGPTLKV 405
            ECDF+GR T           PT P    PP   S   QCH  F GL + GQ  +LR     A F VDS +   V K   P+++ + GRA+A V YPSM  IWPE+Y+  +IRV+EV +VVE+RS  GE+ Y GP LKV
Sbjct:  383 ECDFEGRPTP----------PTDPKSGEPPIPSSTDRQCHLVFTGLNNTGQ--DLRSLRVTAHFGVDSVHK--VGKVTSPIQLGSNGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSGEYQYVGPQLKV 506          
BLAST of mRNA_L-elsbetiae_contig10890.815.1 vs. uniprot
Match: A0A6H5JYP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYP1_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 4.560e-20
Identity = 71/167 (42.51%), Postives = 90/167 (53.89%), Query Frame = 1
Query:    1 QECDFDGRSTASPLRDA-GVPSPTS-----PPPETVSAG-----------SQCHFTFQGLRSAGQGCELRDFAAWARFFVDSPNAAVVEKSAGPLEVDAA---------------GRAHAAVTYPSMLNIWPEVYNVDSIRVIEVAVVVEVRSSDGEFVYTGPTLKV 405
            QECDFDG   A+P +   G+P PT+     P P    A            ++C   F GL S     ELRD    ARF VD P + V   ++ PL+  A                GRA AAV +PS++ IWPEVY VD+IRV+EV +VVEVRSS+G  +YTGPTLK+
Sbjct:  597 QECDFDGNCAATPSKPPRGLP-PTAATSFFPDPSAAVAACTSRPSSNYLNNRCRLAFLGLES-----ELRDVTVCARFSVD-PASRVERFASLPLDGAAGXXXXXDPAGVVGGRRGRADAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSEGNILYTGPTLKL 756          
BLAST of mRNA_L-elsbetiae_contig10890.815.1 vs. uniprot
Match: D8LCK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK7_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 7.240e-19
Identity = 58/125 (46.40%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   91 SAGSQCHFTFQGLRSAGQGCELRDFAAWARFFVDSPNAAVVEKSAGPLEVDAA-----------------GRAHAAVTYPSMLNIWPEVYNVDSIRVIEVAVVVEVRSSDGEFVYTGPTLKVCSR 414
            S  ++C F F GL S     E+RDF   ARF VD P + V   ++ PL+  A                  GR  AAV +PS++ IWPEVY VD+IRV+EV +VVEVRSSDG  +YTGPTLK+  R
Sbjct:  504 SLNNRCRFAFLGLES-----EIRDFTVCARFSVD-PASRVERFASLPLDGAAGXXXXXXXDPAGAVGGRRGRVDAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSDGNILYTGPTLKITYR 622          
BLAST of mRNA_L-elsbetiae_contig10890.815.1 vs. uniprot
Match: A0A6H5K0L1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L1_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 8.660e-18
Identity = 60/145 (41.38%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    1 QECDFDGRSTASPLRDAGVPSPTSPPPETVSAGSQ----CHFTFQGLRSAGQGCELRDFAAWARFFVDSPNAAVVEKSAGPLEVD---AAGRAHAAVTYPSMLNIWPEVYNVDSIRVIEVAVVVEVRSSDGEFVYTGPTLKVCSR 414
            QECDFDGRS A+        S TS     V A S     C   F+G+     G  +RD A  A+F V  P   +V  +   LE D    AG +   +TYPSM +IWPEVY+  S++V+EV + V+VRSSDG++V++ P++KV  R
Sbjct:  435 QECDFDGRSAAA----VPAASATSASANGVCASSSTKKPCRLRFKGIEGVDYG--IRDLAVTAQFSVGPPGN-LVGTAPTNLEADRNACAGSSSCTITYPSMEDIWPEVYSARSVKVVEVDMTVDVRSSDGKWVHSWPSVKVMYR 572          
BLAST of mRNA_L-elsbetiae_contig10890.815.1 vs. uniprot
Match: D7G7N4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N4_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.270e-14
Identity = 55/136 (40.44%), Postives = 70/136 (51.47%), Query Frame = 1
Query:    1 QECDFDGRSTASPLRDAGVPSPTSPPPETVSAGSQCHFTFQGLRSAGQGCELRDFAAWARFFVDSPNAAVVEKSAGPLEVDAAGRAHAAVTYPSMLNIWPEVYNVDSIRVIEVAVVVEVRSSDG-EFVYTGPTLKV 405
            +ECDF+GR    PL   G  S  +P     S G   H  F GL   G   + R       F VD+ +      S  P++V A GRA++ V YPS+  +WPE+Y    +R +EV V VEV S DG EF Y GP LKV
Sbjct:   54 KECDFEGR----PLPGGG--SGMTPSSTVSSNGRDTHVVFTGLNDTGH--DPRGLRVTVIFGVDAVHQIACVTS--PIQVAADGRAYSRVFYPSLEEVWPELYYTVDVRAVEVDVAVEVLSDDGREFRYVGPHLKV 179          
BLAST of mRNA_L-elsbetiae_contig10890.815.1 vs. uniprot
Match: A0A6H5JDQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ6_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.510e-13
Identity = 54/136 (39.71%), Postives = 72/136 (52.94%), Query Frame = 1
Query:    1 QECDFDGRSTASPLRDAGVPSPTSPPPETVSAGSQCHFTFQGLRSAGQGCELRDFAAWARFFVDSPNAAVVEKSAGPLEVDAAGRAHAAVTYPSMLNIWPEVYNVDSIRVIEVAVVVEVRSSDG-EFVYTGPTLKV 405
            +ECDF+GR    PL   G  S  +P     S G   H  F GL + G   + R       F VD+ +      S  P++V A GRA++ V YPS+ ++WPE+Y    +R +EV V VE+ S DG EF Y GP LKV
Sbjct:  232 KECDFEGR----PLPGGG--SGMTPSSTVSSNGRDTHVVFTGLHNTGH--DPRGLRVTVIFGVDAVHQIACVTS--PVQVAADGRAYSRVFYPSLEDVWPELYYTVDVRAVEVDVAVEILSDDGREFRYVGPHLKV 357          
BLAST of mRNA_L-elsbetiae_contig10890.815.1 vs. uniprot
Match: D8LCL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL1_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.250e-12
Identity = 51/138 (36.96%), Postives = 74/138 (53.62%), Query Frame = 1
Query:    1 QECDFDGRSTASPLRDAGVPSPTSPPPETVSAGSQCHFTFQGLRSAGQGCELRDFAAWARFFVDSPNAAVVEKSAGPLEVDAAGRAHAAVTYPSMLNIWPEVYNVDSIRVIEVAVVVEVRSSDGEFVYTGPTLKVCSR 414
            ++ DF+GR T  P + +   SP +       +  + H  F GL   G+   L   AA A+F  +    A  E+  GPL+  + GR + AV YPSM  +WPEVYN  +IRV++V ++VEVRS  G+ +Y    LK   R
Sbjct:  207 EDFDFEGR-TIEPNKPSD--SPFAAAFSVPRSDDEQHLVFIGLGETGR--PLPTLAARAQFSANPGRKA--ERMVGPLQAGSNGRVYGAVQYPSMAELWPEVYNSTAIRVVKVDMLVEVRSRYGDSLYLATELKAMYR 337          
BLAST of mRNA_L-elsbetiae_contig10890.815.1 vs. uniprot
Match: A0A6H5JZ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ42_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.000e-10
Identity = 51/140 (36.43%), Postives = 74/140 (52.86%), Query Frame = 1
Query:    1 QECDFDGRSTASPLRDAGVPSPTSPPPETVSAGSQCHFTFQGLRSAGQGCELRDFAAWARFFVDSPNAAVVEKSAGPLEVDAA--GRAHAAVTYPSMLNIWPEVYNVDSIRVIEVAVVVEVRSSDGEFVYTGPTLKVCSR 414
            ++ DF+GR T  P + +G  SP +       +  + +  F GL   G+   L   AA A+F  +    A  E+  GPL+  A   GR + AV YPSM  +WPEVYN  +IRV++V ++VEVRS  G+ +Y    L    R
Sbjct:  289 EDFDFEGR-TIEPNKPSG--SPFAAALSVPRSDDEQYLVFIGLGETGR--PLPALAARAQFSANPGRQA--ERMVGPLQARAGSNGRVYGAVQYPSMAELWPEVYNSKAIRVVKVDMLVEVRSRSGDSLYLATELMAMYR 421          
BLAST of mRNA_L-elsbetiae_contig10890.815.1 vs. uniprot
Match: D7G6J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J1_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.680e-10
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = 1
Query:    1 QECDFDGRSTASPLRDAGVPSPTSPPPETVSAGSQCHFTFQGLRSAGQGCELRDFAAWARFFVDSPNAAVVEKSAGPLEVDAAGRAHAAVTYPSMLNIWPEVYNVDSIRVIEVAVVVEVRSSDGEFVYTGPTLKVCSR 414
            Q CDF GR+ A P +++ VPS  +     +S   + H  F GL   G G  L        F ++S     + ++AGP++V    R + AV YP+M  +WPE+Y   ++ V++V V + VRS      Y G  LKV  R
Sbjct:    4 QVCDFHGRAVAHP-QESVVPSALAAC--FMSGSLEQHLVFTGL--VGAGPHLDYLTTTVYFSINSGRP--LARAAGPMQVGEDERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVRSGHKTIRYPGTELKVTYR 134          
BLAST of mRNA_L-elsbetiae_contig10890.815.1 vs. uniprot
Match: A0A6H5L4C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C2_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.650e-5
Identity = 31/90 (34.44%), Postives = 48/90 (53.33%), Query Frame = 1
Query:   88 VSAGSQCHFTFQGLRSAGQGCELRDFAAWARFFVDSPNAAVVEKSAGPLEVDAAGRAHAAVTYPSMLNIWPEVYNVDSIRVIEVAVVVEV 357
            +S   + H  F  L  AG    L        F + + ++  +E++ GP++V   GR + AV  PS+  +WPE+YN  SIRV++V V V V
Sbjct:   26 LSGSREQHLVFTELDGAGP--HLAHLTPTVHFSITAGHS--LERAGGPMQVRKDGRVYVAVKCPSISELWPEIYNNRSIRVVQVDVYVTV 111          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10890.815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FZ48_ECTSI2.380e-2345.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JYP1_9PHAE4.560e-2042.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCK7_ECTSI7.240e-1946.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0L1_9PHAE8.660e-1841.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7N4_ECTSI1.270e-1440.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDQ6_9PHAE1.510e-1339.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCL1_ECTSI5.250e-1236.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZ42_9PHAE2.000e-1036.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6J1_ECTSI2.680e-1034.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4C2_9PHAE1.650e-534.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10890contigL-elsbetiae_contig10890:5432..6205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815306.5530038-CDS-L-elsbetiae_contig10890:5431..57671622815306.5530038-CDS-L-elsbetiae_contig10890:5431..5767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10890 5432..5767 +
1691682829.0585344-CDS-L-elsbetiae_contig10890:5431..57671691682829.0585344-CDS-L-elsbetiae_contig10890:5431..5767Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10890 5432..5767 +
1622815306.5656266-CDS-L-elsbetiae_contig10890:6127..62051622815306.5656266-CDS-L-elsbetiae_contig10890:6127..6205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10890 6128..6205 +
1691682829.0688457-CDS-L-elsbetiae_contig10890:6127..62051691682829.0688457-CDS-L-elsbetiae_contig10890:6127..6205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10890 6128..6205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10890.815.1prot_L-elsbetiae_contig10890.815.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10890 5432..6205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10890.815.1

>prot_L-elsbetiae_contig10890.815.1 ID=prot_L-elsbetiae_contig10890.815.1|Name=mRNA_L-elsbetiae_contig10890.815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
QECDFDGRSTASPLRDAGVPSPTSPPPETVSAGSQCHFTFQGLRSAGQGC
ELRDFAAWARFFVDSPNAAVVEKSAGPLEVDAAGRAHAAVTYPSMLNIWP
EVYNVDSIRVIEVAVVVEVRSSDGEFVYTGPTLKVCSR
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mRNA from alignment at L-elsbetiae_contig10890:5432..6205+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10890.815.1 ID=mRNA_L-elsbetiae_contig10890.815.1|Name=mRNA_L-elsbetiae_contig10890.815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig10890:5432..6205+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGTGTGATTTCGACGGGCGCTCTACCGCGTCGCCGCTGAGGGACGC CGGGGTGCCTTCGCCGACATCGCCGCCGCCCGAGACTGTGTCCGCCGGTA GTCAGTGCCACTTCACGTTCCAGGGGCTTCGGAGCGCGGGGCAGGGGTGC GAGCTCCGCGACTTCGCTGCCTGGGCGCGGTTCTTCGTCGACTCTCCGAA TGCGGCCGTGGTGGAGAAGTCAGCGGGCCCCCTCGAGGTCGACGCCGCCG GCCGCGCGCACGCGGCGGTGACCTACCCCAGCATGCTGAACATCTGGCCG GAGGTGTACAACGTGGATAGCATCCGCGTCATCGAGGTGTGTGTCCCGTC GGTCGGCACTGCAGGTGTTTCATTCATATGTTTAAAATCACCCGGGTCCC GGGGCCCCCGCAGCTAAGCTTGTTCAGGGGTCTAGGTTCCCCAGCATTTC ATTTCTCGCAACATGGCATGACCGTACACGAGGAGACGACTTGATTCCTC ACAGGCGATCGTCTATGTCAGACGCTGTGGTTTACTGGTATACCGTATAT ATTATACCAGAGTATACTGCTTCGGAGTATTTCATCACGACTGAAGGTGT CGCAACACACCCCGCGCATACGTTTCTTCGCTTTCCTGCAATCAATCTGG CGTGTGTGGACACGGTTTCAATTTTCTGCTGAACGAATGCACACAGGTGG CCGTGGTTGTCGAAGTGCGGTCGAGTGACGGGGAGTTCGTCTACACGGGG CCTACGCTAAAGGTATGCAGTCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10890:5432..6205+

>mRNA_L-elsbetiae_contig10890.815.1 ID=mRNA_L-elsbetiae_contig10890.815.1|Name=mRNA_L-elsbetiae_contig10890.815.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig10890:5432..6205+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGTGTGATTTCGACGGGCGCTCTACCGCGTCGCCGCTGAGGGACGC
CGGGGTGCCTTCGCCGACATCGCCGCCGCCCGAGACTGTGTCCGCCGGTA
GTCAGTGCCACTTCACGTTCCAGGGGCTTCGGAGCGCGGGGCAGGGGTGC
GAGCTCCGCGACTTCGCTGCCTGGGCGCGGTTCTTCGTCGACTCTCCGAA
TGCGGCCGTGGTGGAGAAGTCAGCGGGCCCCCTCGAGGTCGACGCCGCCG
GCCGCGCGCACGCGGCGGTGACCTACCCCAGCATGCTGAACATCTGGCCG
GAGGTGTACAACGTGGATAGCATCCGCGTCATCGAGCAGGAGTGTGATTT
CGACGGGCGCTCTACCGCGTCGCCGCTGAGGGACGCCGGGGTGCCTTCGC
CGACATCGCCGCCGCCCGAGACTGTGTCCGCCGGTAGTCAGTGCCACTTC
ACGTTCCAGGGGCTTCGGAGCGCGGGGCAGGGGTGCGAGCTCCGCGACTT
CGCTGCCTGGGCGCGGTTCTTCGTCGACTCTCCGAATGCGGCCGTGGTGG
AGAAGTCAGCGGGCCCCCTCGAGGTCGACGCCGCCGGCCGCGCGCACGCG
GCGGTGACCTACCCCAGCATGCTGAACATCTGGCCGGAGGTGTACAACGT
GGATAGCATCCGCGTCATCGAGGTGGCCGTGGTTGTCGAAGTGCGGTCGA
GTGACGGGGAGTTCGTCTACACGGGGCCTACGCTAAAGGTATGCAGTCGT
GTGGCCGTGGTTGTCGAAGTGCGGTCGAGTGACGGGGAGTTCGTCTACAC
GGGGCCTACGCTAAAGGTATGCAGTCGT
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