mRNA_L-elsbetiae_contig1088.804.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1088.804.1
Unique NamemRNA_L-elsbetiae_contig1088.804.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1088.804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1088contigL-elsbetiae_contig1088:12180..13796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size821
Cds size819
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815305.69405-CDS-L-elsbetiae_contig1088:12179..126891622815305.69405-CDS-L-elsbetiae_contig1088:12179..12689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 12180..12689 +
1691682828.5250087-CDS-L-elsbetiae_contig1088:12179..126891691682828.5250087-CDS-L-elsbetiae_contig1088:12179..12689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 12180..12689 +
1622815305.7040534-CDS-L-elsbetiae_contig1088:13486..137951622815305.7040534-CDS-L-elsbetiae_contig1088:13486..13795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 13487..13795 +
1691682828.5357075-CDS-L-elsbetiae_contig1088:13486..137951691682828.5357075-CDS-L-elsbetiae_contig1088:13486..13795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 13487..13795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1088.804.1prot_L-elsbetiae_contig1088.804.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1088 12180..13795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1088.804.1

>prot_L-elsbetiae_contig1088.804.1 ID=prot_L-elsbetiae_contig1088.804.1|Name=mRNA_L-elsbetiae_contig1088.804.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=273bp
ESVVRLSDNSPAPESSPETVLRGGAHGAAAVASSAFAFDGAYELGGNSFL
FGTAVGQDANNSGGGGGGGGGGNNNAQMTAAGASPAREFGQAPDRGDDAD
GLRSRFFGDSFRASDDEPPAAAAATATAAATAAAARGAARGEAAARGADD
DGSGATRGGAAAAAAPRASQARSAAAGALSTANAREAARGGAGANPFLRA
PSVRAPGALAGMPEALRRPSRGGSAGAGVGAGRPARGGGGSTGWAEENAL
YGAGDGPEGGGAREEEEEEAGGG
back to top

mRNA from alignment at L-elsbetiae_contig1088:12180..13796+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1088.804.1 ID=mRNA_L-elsbetiae_contig1088.804.1|Name=mRNA_L-elsbetiae_contig1088.804.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1617bp|location=Sequence derived from alignment at L-elsbetiae_contig1088:12180..13796+ (Laminarionema elsbetiae ELsaHSoW15)
GAGAGCGTCGTGCGATTGTCGGACAACTCTCCGGCGCCCGAGTCCTCTCC
CGAGACGGTTCTGAGAGGAGGCGCCCACGGCGCCGCCGCGGTCGCGTCTT
CTGCGTTTGCTTTCGATGGCGCCTACGAGCTTGGCGGGAACTCCTTCCTG
TTTGGCACTGCTGTCGGGCAAGATGCCAACAACAGCGGCGGGGGTGGCGG
CGGCGGCGGCGGCGGCAACAACAACGCACAAATGACGGCGGCGGGTGCTT
CGCCCGCGAGGGAATTCGGCCAGGCGCCCGACCGTGGCGATGATGCCGAT
GGTCTTCGGTCGCGCTTTTTCGGAGATTCCTTTCGAGCAAGCGATGATGA
GCCCCCTGCTGCTGCTGCTGCTACTGCTACTGCTGCTGCTACTGCTGCTG
CTGCTCGTGGTGCCGCTCGCGGTGAAGCTGCTGCTCGTGGTGCAGATGAT
GATGGTAGCGGCGCCACTCGCGGGGGAGCTGCTGCCGCTGCGGCCCCGAG
AGCCTCGCAGGTGCTAACTCCGTTCATTTACGTTGCGCTACGGAAAACGT
AGCACGTGCTCGTTTGTTGTCTTTATGGTTGGAACCAGACGAAACGCCAC
AGCTTTGCCTCCGAGACGAGAATGTTCTTATGTGCATGTGTTTCCTTGTT
GAGATTCGCTGTAGCCCCAGAATAGAGACTTCTTCGGTGTCGTGGTCGGA
GGTGCAAGCAATCGCCTCCTATCGGAAAAAGGCTGGTTCTTGTGCTCCGA
GGGCGAATGCGATACATTTCCTCGGCCCAGCATTGAGCAGGGGCTTTTCC
CTTCGAGCGCTAGATGGCCCTTCTACGACGGAAAAGCTTCGCAGTCAGTA
CCTTCATCTAGGTCAATATCTCTTTGAGGACGTCGGAATGCCTTTCGCTC
AGGGTCGGAGAATCCCGTCCGGCCTACCTCGACGTTCTGCTCACCCAAAG
CCCGCTTTCCCATTTTTTCTCGACCTCAAAAGCCGTAAGCGGCCCCCCAC
TGATGGACTATTAGGAGGAGGGTGTGCGAATATTGTACTGGAACAGTCTC
TTGCACTGGCGCGCTGTAGGCACAGTAGTCTTGGACTGCAACAACGCCAG
GAGCGTAAAACGAGGGACAGGGGGCGGGGGGGGGGGGATAACCGGTACGG
TACATAAAGGCGGCAGACAGGCTATACGATGTTACACCACCAAGCTCGAA
CGGCCCAATCATTCTCCTGTAAACACATCCCGCTGCTCTCGCACGCACGC
ACGCACGCACGCACGCACGCACGCACGCATGGACGCACCCACGGGTTTCC
TCCGCAGGCGCGCTCGGCTGCTGCAGGGGCGCTGTCGACGGCCAACGCGC
GCGAAGCCGCCAGGGGCGGGGCCGGGGCCAATCCATTCCTCCGTGCCCCC
TCGGTCAGGGCCCCGGGCGCCCTCGCCGGCATGCCCGAGGCGCTACGCCG
ACCCTCCCGCGGCGGCAGCGCTGGTGCTGGCGTCGGTGCTGGTCGGCCCG
CGAGGGGCGGCGGAGGGTCTACGGGGTGGGCCGAAGAGAACGCCCTCTAC
GGAGCAGGGGACGGCCCAGAAGGAGGAGGAGCACGAGAAGAAGAAGAAGA
AGAAGCAGGAGGAGGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1088:12180..13796+

>mRNA_L-elsbetiae_contig1088.804.1 ID=mRNA_L-elsbetiae_contig1088.804.1|Name=mRNA_L-elsbetiae_contig1088.804.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1638bp|location=Sequence derived from alignment at L-elsbetiae_contig1088:12180..13796+ (Laminarionema elsbetiae ELsaHSoW15)
GAGAGCGTCGTGCGATTGTCGGACAACTCTCCGGCGCCCGAGTCCTCTCC
CGAGACGGTTCTGAGAGGAGGCGCCCACGGCGCCGCCGCGGTCGCGTCTT
CTGCGTTTGCTTTCGATGGCGCCTACGAGCTTGGCGGGAACTCCTTCCTG
TTTGGCACTGCTGTCGGGCAAGATGCCAACAACAGCGGCGGGGGTGGCGG
CGGCGGCGGCGGCGGCAACAACAACGCACAAATGACGGCGGCGGGTGCTT
CGCCCGCGAGGGAATTCGGCCAGGCGCCCGACCGTGGCGATGATGCCGAT
GGTCTTCGGTCGCGCTTTTTCGGAGATTCCTTTCGAGCAAGCGATGATGA
GCCCCCTGCTGCTGCTGCTGCTACTGCTACTGCTGCTGCTACTGCTGCTG
CTGCTCGTGGTGCCGCTCGCGGTGAAGCTGCTGCTCGTGGTGCAGATGAT
GATGGTAGCGGCGCCACTCGCGGGGGAGCTGCTGCCGCTGCGGCCCCGAG
AGCCTCGCAGGAGAGCGTCGTGCGATTGTCGGACAACTCTCCGGCGCCCG
AGTCCTCTCCCGAGACGGTTCTGAGAGGAGGCGCCCACGGCGCCGCCGCG
GTCGCGTCTTCTGCGTTTGCTTTCGATGGCGCCTACGAGCTTGGCGGGAA
CTCCTTCCTGTTTGGCACTGCTGTCGGGCAAGATGCCAACAACAGCGGCG
GGGGTGGCGGCGGCGGCGGCGGCGGCAACAACAACGCACAAATGACGGCG
GCGGGTGCTTCGCCCGCGAGGGAATTCGGCCAGGCGCCCGACCGTGGCGA
TGATGCCGATGGTCTTCGGTCGCGCTTTTTCGGAGATTCCTTTCGAGCAA
GCGATGATGAGCCCCCTGCTGCTGCTGCTGCTACTGCTACTGCTGCTGCT
ACTGCTGCTGCTGCTCGTGGTGCCGCTCGCGGTGAAGCTGCTGCTCGTGG
TGCAGATGATGATGGTAGCGGCGCCACTCGCGGGGGAGCTGCTGCCGCTG
CGGCCCCGAGAGCCTCGCAGGCGCGCTCGGCTGCTGCAGGGGCGCTGTCG
ACGGCCAACGCGCGCGAAGCCGCCAGGGGCGGGGCCGGGGCCAATCCATT
CCTCCGTGCCCCCTCGGTCAGGGCCCCGGGCGCCCTCGCCGGCATGCCCG
AGGCGCTACGCCGACCCTCCCGCGGCGGCAGCGCTGGTGCTGGCGTCGGT
GCTGGTCGGCCCGCGAGGGGCGGCGGAGGGTCTACGGGGTGGGCCGAAGA
GAACGCCCTCTACGGAGCAGGGGACGGCCCAGAAGGAGGAGGAGCACGAG
AAGAAGAAGAAGAAGAAGCAGGAGGAGGAGCGCGCTCGGCTGCTGCAGGG
GCGCTGTCGACGGCCAACGCGCGCGAAGCCGCCAGGGGCGGGGCCGGGGC
CAATCCATTCCTCCGTGCCCCCTCGGTCAGGGCCCCGGGCGCCCTCGCCG
GCATGCCCGAGGCGCTACGCCGACCCTCCCGCGGCGGCAGCGCTGGTGCT
GGCGTCGGTGCTGGTCGGCCCGCGAGGGGCGGCGGAGGGTCTACGGGGTG
GGCCGAAGAGAACGCCCTCTACGGAGCAGGGGACGGCCCAGAAGGAGGAG
GAGCACGAGAAGAAGAAGAAGAAGAAGCAGGAGGAGGA
back to top