mRNA_L-elsbetiae_contig1088.803.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1088.803.1
Unique NamemRNA_L-elsbetiae_contig1088.803.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1088.803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1088contigL-elsbetiae_contig1088:10432..12072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815305.644908-CDS-L-elsbetiae_contig1088:10431..104631622815305.644908-CDS-L-elsbetiae_contig1088:10431..10463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 10432..10463 +
1691682828.5060809-CDS-L-elsbetiae_contig1088:10431..104631691682828.5060809-CDS-L-elsbetiae_contig1088:10431..10463Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 10432..10463 +
1622815305.6546824-CDS-L-elsbetiae_contig1088:11749..120711622815305.6546824-CDS-L-elsbetiae_contig1088:11749..12071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 11750..12071 +
1691682828.5153337-CDS-L-elsbetiae_contig1088:11749..120711691682828.5153337-CDS-L-elsbetiae_contig1088:11749..12071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 11750..12071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1088.803.1prot_L-elsbetiae_contig1088.803.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1088 10432..12071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1088.803.1

>prot_L-elsbetiae_contig1088.803.1 ID=prot_L-elsbetiae_contig1088.803.1|Name=mRNA_L-elsbetiae_contig1088.803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
HLRALPGSVTRFTKHHHPNSGTPQTPEPHYAARPPPETSRRRMDQLKSTG
PRTSPPASAGKHTRPSLDRAASRPFGGYGSPPAENKGPVDSGVSSRFARS
RPTPAAAAMRPSPGPLLS
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mRNA from alignment at L-elsbetiae_contig1088:10432..12072+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1088.803.1 ID=mRNA_L-elsbetiae_contig1088.803.1|Name=mRNA_L-elsbetiae_contig1088.803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1641bp|location=Sequence derived from alignment at L-elsbetiae_contig1088:10432..12072+ (Laminarionema elsbetiae ELsaHSoW15)
CACCTTCGCGCGCTTCCGGGATCGGTCACCCGGTACGTAAATAACTGTTT
ATGATCCAAAGTTCGACTGCTGCAGCCGGTAGGGACTCTCTTCTTCGTTG
TTGCATGGTCGAGCCAATTTTCGAGCCCACAGAATGTCAACTTGTGGGAA
TCATTCTACCCTTGTGTACAAGCTTCTGGAATCACCCCAGCTATCGCGCG
TCTAAGGCACTTGCCAGAGGCTTTTAGTGTTTGTGGTTCTGTGCGGTTGC
TACTGGGTTGCGGATCTTGCAGAATGTGTGGGCGTCACTACGTGGTCTAT
TGTCTATTGTCGAAATGCACTGGACTGTCGGGGGAGTTTCACAATTATTA
ATTTGAAAATTCAGAATGTACCTAGAGTCTACACGCTCCCCGTTTGATAG
GCCCGCGGCTGCGGGGATGAGAAATGCAATGTGCGATATATAAGTGGCAT
GACAGCGGTAGAATAGTGGCCGGTAACAACGCCGCCTCTATGCTCCCCTG
CTTGAGTCTATTTCAAAACTCAGTCTAGATGATGAATCGGCGCGTGTGTG
TCTGGAAATACGGGAGAGAAGAGGGGAGGGGGGAGGGGGGAGAGAGACAA
GGTAGAGAGACATGTAGGGAGAGGCCAAAGAGAGCGAGGGAGCGACCGGG
CCAGAGAGAGAGAGAGAGAGAGAGAGTGGGATGTACATGCTTTCACTCCA
TATGGAAAGAGAAACTACCTTCACGCAGCAGTTGCGGGCAACCAAATAGC
ATGAAGGCATATCGGCACGATGGTCTCCACACATCCATAGCTCCACGGCT
CTCAGCTTTCTTACACTGCCGTGTGTCTACCCCCCGCATGCTGCATAAAC
ACAGCGGTGCCCCCCGCCTTAAAGAGCTCCGAAACGCTTTTCTGAGAGTA
TACAGGCGTTAGCTCCCCTTCAGAAAGCACAGGACCGAACGCAAGTACTT
CTACTTTACGACAAGCACGGTATTCTACATATACAACCAACACCCTGCTG
CTTGTCAGAACGCGTTGTGAACTTGCCACTTTCTTAGTTTGTGAACAACG
AATGAATCCGTTTTCCGACAAATAGCTAGTCCGGCCGATCTCAAGCGACC
TACTCCTGCATAGGTACCGCGCATGGCTTCAAGAGGGCATTTTTTCCTGA
CCACTTAAAACCAAGCCTTGAAGGTTTTTCCTAACGAGCCCCGGCAGAAG
ACGGACGAATGATGCCGGTGCGCTGAAAACCTTTTGCAATGGTCCTAACA
CATATTCATTCAACCTAAAAAAAAGCCTCACACTTTCTCCTAACCCTCTA
CTACCACCCCCGCCGCAGGTTCACCAAACACCACCACCCCAACTCCGGAA
CTCCCCAGACCCCAGAGCCACACTACGCCGCACGCCCGCCCCCCGAGACT
TCCCGCAGGCGAATGGATCAGCTGAAATCAACCGGCCCCAGAACGTCGCC
GCCGGCGAGCGCCGGGAAGCACACCCGGCCAAGCCTCGACCGCGCCGCTT
CCCGCCCGTTCGGCGGGTACGGCTCGCCCCCCGCAGAGAACAAGGGGCCT
GTCGACAGCGGCGTTAGCAGTCGGTTCGCGCGCTCGCGGCCGACTCCCGC
CGCCGCCGCCATGCGCCCTTCGCCTGGCCCCCTGTTGTCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1088:10432..12072+

>mRNA_L-elsbetiae_contig1088.803.1 ID=mRNA_L-elsbetiae_contig1088.803.1|Name=mRNA_L-elsbetiae_contig1088.803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig1088:10432..12072+ (Laminarionema elsbetiae ELsaHSoW15)
CACCTTCGCGCGCTTCCGGGATCGGTCACCCGCACCTTCGCGCGCTTCCG
GGATCGGTCACCCGGTTCACCAAACACCACCACCCCAACTCCGGAACTCC
CCAGACCCCAGAGCCACACTACGCCGCACGCCCGCCCCCCGAGACTTCCC
GCAGGCGAATGGATCAGCTGAAATCAACCGGCCCCAGAACGTCGCCGCCG
GCGAGCGCCGGGAAGCACACCCGGCCAAGCCTCGACCGCGCCGCTTCCCG
CCCGTTCGGCGGGTACGGCTCGCCCCCCGCAGAGAACAAGGGGCCTGTCG
ACAGCGGCGTTAGCAGTCGGTTCGCGCGCTCGCGGCCGACTCCCGCCGCC
GCCGCCATGCGCCCTTCGCCTGGCCCCCTGTTGTCTGTTCACCAAACACC
ACCACCCCAACTCCGGAACTCCCCAGACCCCAGAGCCACACTACGCCGCA
CGCCCGCCCCCCGAGACTTCCCGCAGGCGAATGGATCAGCTGAAATCAAC
CGGCCCCAGAACGTCGCCGCCGGCGAGCGCCGGGAAGCACACCCGGCCAA
GCCTCGACCGCGCCGCTTCCCGCCCGTTCGGCGGGTACGGCTCGCCCCCC
GCAGAGAACAAGGGGCCTGTCGACAGCGGCGTTAGCAGTCGGTTCGCGCG
CTCGCGGCCGACTCCCGCCGCCGCCGCCATGCGCCCTTCGCCTGGCCCCC
TGTTGTCT
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