mRNA_L-elsbetiae_contig10879.802.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10879.802.1 vs. uniprot
Match: A0A6H5KRZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ3_9PHAE) HSP 1 Score: 327 bits (837), Expect = 1.180e-98 Identity = 280/542 (51.66%), Postives = 328/542 (60.52%), Query Frame = 1 Query: 1 EGIRKEETCFD------RGEWSSKLCHLPTELSSLPFHSMELPSSPXXXXXXXXXLP--------------LQRRTRSPSLPSSGDTNVLVARKPAPGGGVEPGEHEGGLREKIGGAVAALGAAGRGLGGGRGGARA-RTVTDEGMTLRFELDNVGLPSGHWEWVGGWMVDSETEVSADQDGWVYGRAAEDISEIALGQRSSSRRSIGDSGNGSGGSVADGESARNSLEAA-----GAPPPQACEAVXXXXXXXXXXXXXXXXXXXXXXXXSQLRSGPTSPAPSAXXXKDQAQEEAXXXXXXXXXXXXXXXXXXGL--W-LRRRRLARLRMIRKVDGARESTTSVLEMMRRLCSLEVLVRKLSSQVVAQQRQVTGLENQVAYLAPLHPKLKKACALGRKDRQRGNALQGRLVEAENEIKVLRRCLSAANATRSPPXXXXXXXXXXXXITNAATTTPGRQQQQQPKATGLLSAQELDEAGETSESEGAREGKKEGGYEEERGAEYFAGXXXXXXXXGKVGAEAWGWVEGVAQRAAGTFARRPR 1539 EGIRKEE+CF+ RG WSS+L PTELSSLP H + P P XXXXXXXL R+RSP+L +G AR A GG GGLREKIGGA+AA+ AAGRGLGGG GGA R VTDEG+T RFELD+VGLPS HWEWVGGWMVDSETE S+DQDGW+YGR+ +ISEIALG+ SS S G + S ++ SA ++ A GA P+A XXXXXXXXXXXXX SG S A ++ +E+A XXXXXXXXXXXXXX W LRRRRL RLRM+R VDGAR+ST SVLEM RRL S+E+LVRKLS QVV QQRQ+T LE+QVA+LAPL PKL+ ACALGRKDR RG+ALQG+L+EAENE+KVLRRC+ + T + T+ P P + S + + A E + AR +G + XXXXXXX A AWGWVEGVAQRAAGT RR R Sbjct: 350 EGIRKEESCFEWQGKDSRGAWSSRLGAFPTELSSLPLHHLAGPHPPPQXXXXXXXLSSLPQSXXXXXXXXXXXXRSRSPTLALTGFVTADHARCEA-GGQAGSDARAGGLREKIGGAMAAVAAAGRGLGGGIGGAPGWRMVTDEGVTFRFELDDVGLPSHHWEWVGGWMVDSETEASSDQDGWIYGRSPSEISEIALGRTSS--HSNGMRSSSSSPEISSSRSAADATAGAAGVGDGAREPEASSE----NTQDGDESXXXXXXXXXXXXXXXXXSGNYSDGDIASSADNKGEEDAKGPRXXXXXXXXXXXXXXXXXXWGLRRRRLVRLRMVRMVDGARDSTISVLEMFRRLSSMEILVRKLSRQVVTQQRQMTALESQVAFLAPLQPKLRMACALGRKDRMRGDALQGKLIEAENELKVLRRCMETTSGTGTGTGPRGPAAPPLAPATSRRAAAPA------PLRAAVPSGRNVKGATEDDDGVSARRAGGDGXVD-----------XXXXXXXXXXXAAAWGWVEGVAQRAAGTLVRRGR 867 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10879.802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10879.802.1 >prot_L-elsbetiae_contig10879.802.1 ID=prot_L-elsbetiae_contig10879.802.1|Name=mRNA_L-elsbetiae_contig10879.802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=513bp EGIRKEETCFDRGEWSSKLCHLPTELSSLPFHSMELPSSPSPPPSPPSPLback to top mRNA from alignment at L-elsbetiae_contig10879:1661..6636- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10879.802.1 ID=mRNA_L-elsbetiae_contig10879.802.1|Name=mRNA_L-elsbetiae_contig10879.802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4976bp|location=Sequence derived from alignment at L-elsbetiae_contig10879:1661..6636- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10879:1661..6636- >mRNA_L-elsbetiae_contig10879.802.1 ID=mRNA_L-elsbetiae_contig10879.802.1|Name=mRNA_L-elsbetiae_contig10879.802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3078bp|location=Sequence derived from alignment at L-elsbetiae_contig10879:1661..6636- (Laminarionema elsbetiae ELsaHSoW15)back to top |