mRNA_L-elsbetiae_contig10876.800.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10876.800.1
Unique NamemRNA_L-elsbetiae_contig10876.800.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10876.800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10876contigL-elsbetiae_contig10876:5224..5892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815305.404544-CDS-L-elsbetiae_contig10876:5223..53071622815305.404544-CDS-L-elsbetiae_contig10876:5223..5307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10876 5224..5307 +
1691682828.3719318-CDS-L-elsbetiae_contig10876:5223..53071691682828.3719318-CDS-L-elsbetiae_contig10876:5223..5307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10876 5224..5307 +
1622815305.41955-CDS-L-elsbetiae_contig10876:5736..58921622815305.41955-CDS-L-elsbetiae_contig10876:5736..5892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10876 5737..5892 +
1691682828.3800282-CDS-L-elsbetiae_contig10876:5736..58921691682828.3800282-CDS-L-elsbetiae_contig10876:5736..5892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10876 5737..5892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10876.800.1prot_L-elsbetiae_contig10876.800.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10876 5224..5892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10876.800.1

>prot_L-elsbetiae_contig10876.800.1 ID=prot_L-elsbetiae_contig10876.800.1|Name=mRNA_L-elsbetiae_contig10876.800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
VGGWAIIHAEGSPAVVCPKDGRRFERDQVSAPASSPLTVFFASQLRNLLQ
LKSFMDRSEAKNVVEAFTKWQRSVENAKF*
back to top

mRNA from alignment at L-elsbetiae_contig10876:5224..5892+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10876.800.1 ID=mRNA_L-elsbetiae_contig10876.800.1|Name=mRNA_L-elsbetiae_contig10876.800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=669bp|location=Sequence derived from alignment at L-elsbetiae_contig10876:5224..5892+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGGTGGATGGGCCATCATTCACGCAGAAGGTAGCCCGGCCGTCGTCTG
CCCCAAGGACGGGAGGCGTTTCGAGCGTGACCAGGTGCGCTGCGCAGTTA
GTTATGTGCGGGTTAGATTGCGGTGGTCGCGCTCATCGTGCACATTATCT
ACTGCGTGGATGAGCTGGGCGGAGAAGATGGTGGTCAGAAAGGTGTATTA
AACTCCCGAAGGTGGTGGCTGGTAGATGGGATGTGCTCTATTTTCACTTG
CTGCGTTCATCAGAGAGTGGAGACAGAGGGGGTTGGTTGCCTCTTGCCTA
GGGGTTCCGTAAAGTGGGACATGATCGATGGGGGATATGACTTGCGTCGG
ATTATCCCTAACGGCCATATGGATCCGTAACACCATACCAATGAGTTGCG
TGTGGCCTATCTTGATTACGTCTACTATGTCGGCCATTCGACACGTCGTC
TACTATGCCGGTCTGATCCCGTGGTTTTTAGCTCCACGCGCGTTGTTTTC
AATGCCTCGCAAGGTGTCCGCTCCGGCTTCTTCGCCTCTCACCGTCTTCT
TCGCCTCCCAACTTCGAAATCTCCTGCAGCTCAAGAGCTTCATGGACCGG
TCGGAGGCCAAAAACGTCGTCGAGGCGTTCACCAAGTGGCAGAGGAGTGT
CGAGAACGCCAAGTTCTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10876:5224..5892+

>mRNA_L-elsbetiae_contig10876.800.1 ID=mRNA_L-elsbetiae_contig10876.800.1|Name=mRNA_L-elsbetiae_contig10876.800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig10876:5224..5892+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGGTGGATGGGCCATCATTCACGCAGAAGGTAGCCCGGCCGTCGTCTG
CCCCAAGGACGGGAGGCGTTTCGAGCGTGACCAGGTGGGTGGATGGGCCA
TCATTCACGCAGAAGGTAGCCCGGCCGTCGTCTGCCCCAAGGACGGGAGG
CGTTTCGAGCGTGACCAGGTGTCCGCTCCGGCTTCTTCGCCTCTCACCGT
CTTCTTCGCCTCCCAACTTCGAAATCTCCTGCAGCTCAAGAGCTTCATGG
ACCGGTCGGAGGCCAAAAACGTCGTCGAGGCGTTCACCAAGTGGCAGAGG
AGTGTCGAGAACGCCAAGTTCTAAGTGTCCGCTCCGGCTTCTTCGCCTCT
CACCGTCTTCTTCGCCTCCCAACTTCGAAATCTCCTGCAGCTCAAGAGCT
TCATGGACCGGTCGGAGGCCAAAAACGTCGTCGAGGCGTTCACCAAGTGG
CAGAGGAGTGTCGAGAACGCCAAGTTCTAA
back to top