mRNA_L-elsbetiae_contig10859.787.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10859.787.1
Unique NamemRNA_L-elsbetiae_contig10859.787.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10859.787.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 1.890e-46
Identity = 101/185 (54.59%), Postives = 118/185 (63.78%), Query Frame = 3 
Query:  528 VGAAPVGGTGSKKVVCKLCTSQLTRSKMRMHVGGHILKDKVLQVSTVCGFCGGSGCRTTIKDPAGRAAPVMHSSCVYAPWNDARHETVAVKLKSARAGSRSSPCTNIVVKCIFCSQETYIWKYGMADHVTRCHNQETLVEDGTESAKKFKHDYTVSGSEKNAVLQKFKGGRPRNRREDDTLPPVV 1082
            V AA VG T S+ +V   C           HVGG    +K   VSTVCGFCGG GCR+TI DP G A P++HS+C  AP +DAR E VA+ L SARA S +SPCTN+V+KC  CSQ+ YIW YGM DHVTRCH    LV  GT  A KFK   T+S SEK  VL K K GRPR R + +TLPP +
Sbjct: 1057 VEAAGVGNTDSRGIVVGDC-----------HVGGDP-GNKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGT-GADKFKEACTISESEKAKVLHKVKAGRPRRRDQGNTLPPPL 1228
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BLAST of mRNA_L-elsbetiae_contig10859.787.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 2.030e-38
Identity = 79/128 (61.72%), Postives = 92/128 (71.88%), Query Frame = 3 
Query:  624 GGHILKDKVLQVSTVCGFCGGSGCRTTIKDPAGRAAPVMHSSCVYAPWNDARHETVAVKLKSARAGSRSSPCTNIVVKCIFCSQETYIWKYGMADHVTRCHNQETLVEDGTESAKKFKHDYTVSGSEK 1007
            GGHILKDKV   ST CGFCGG G  TTI DP G+A P++HS+C  AP +DAR E VA+ L SARAGS +S CTN+V KC FCSQ  YIWKY M+DH+TRCH  + LV +GT  A  FK   T+S SEK
Sbjct:  403 GGHILKDKV---STACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNMVFKCFFCSQYNYIWKYSMSDHITRCHQADVLVAEGT-GADNFKETCTISESEK 526
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BLAST of mRNA_L-elsbetiae_contig10859.787.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.030e-22
Identity = 55/106 (51.89%), Postives = 71/106 (66.98%), Query Frame = 3 
Query:  846 IVVKCIFCSQETYIWKYGMADHVTRCHNQETLVEDGTESAKKFKHDYTVSGSEKNAVLQKFKGGRPRNRRE-DDTLPPVVRRIVSGNGVPGRGVPGARPSESKEKE 1160
            +V+KC+FCSQ+TYIWKYGM++HVTRCH ++ LV  GT +  +FK  YT+S SEK  VLQKFK GRPR R + ++ LP        GNG  GR + G R  E   +E
Sbjct:    1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGT-TVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMSGTRSLEDMGEE 105
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BLAST of mRNA_L-elsbetiae_contig10859.787.1 vs. uniprot
Match: A0A6H5K5R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R3_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.830e-18
Identity = 50/107 (46.73%), Postives = 64/107 (59.81%), Query Frame = 3 
Query:  846 IVVKCIFCSQETYIWKYGMADHVTRCHNQETLVEDGTESAKKFKHDYTVSGSEKNAVLQKFKGGRPRNRRE-DDTLPPVVRRIVSGNGVPGRGVPGARPSESKEKED 1163
            +V+KC  CSQ  YIWKYGM++HVTR H ++  V  GT    KFK  Y++S SEK   L KFK G+PR R + ++ LPP       GNG  GR + G R  E   +ED
Sbjct:    1 MVLKCFVCSQNNYIWKYGMSEHVTRRHQEDMRVAAGT-GVDKFKEAYSISESEKAKALHKFKAGKPRQRGQGNEVLPPGALGRTEGNGASGRNMAGTRSLEDMGEED 106
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BLAST of mRNA_L-elsbetiae_contig10859.787.1 vs. uniprot
Match: A0A8H8JBI3_9AGAM (C2H2-type domain-containing protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JBI3_9AGAM)

HSP 1 Score: 67.4 bits (163), Expect = 4.350e-8
Identity = 43/144 (29.86%), Postives = 66/144 (45.83%), Query Frame = 3 
Query:  573 CKLCTSQLT-RSKMRMHVGGHIL-------KDKVLQVSTVCGFCGGSGCRTTIKDP--AGRAAPVMHSSCVYAPWNDARHETVAVKLKSARAGSRSSPCTNIVVKCIFCSQETYIWKYGMADHVTRCHNQETLVEDGTESAKKF 974
            C  C   +  +SKMRMH+G H+L         +   ++ +CGFCG +G  T   +P   G+   V+ S C Y                +A   S++SPCTN  V C  CS +  +W YG+ DH+   H    L++   +   K+
Sbjct: 1175 CHHCGETIAIKSKMRMHIGQHLLVLRSSLDATRTGVMADMCGFCGRAGTCTVRVEPQRTGKGLEVV-SDCSYRD---------KFSYAAAAQSSKTSPCTNRPVACPLCSGDRCVWSYGLKDHILAVHPAHQLLDTTLKDISKY 1308
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BLAST of mRNA_L-elsbetiae_contig10859.787.1 vs. uniprot
Match: B0DV83_LACBS (Predicted protein n=1 Tax=Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) TaxID=486041 RepID=B0DV83_LACBS)

HSP 1 Score: 59.3 bits (142), Expect = 5.040e-7
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 3 
Query:  552 TGSKKVVCKLCTSQLTRSKMRMHVGGHIL------KDKVLQV--STVCGFCG-GSGCRTTIKDPAGRAAPVMHSSCVYAPWNDARHETVAVKLKSARAGSRSSPCTNIVVKCIFCS 872
            +G+  V C+LC  + T SKMR+HVG HIL       D  L+   ++ CGFCG  SGC+T +       A V+ S+C +       +E +  + K+A   +++SPCTNI + C  C+
Sbjct:   28 SGATDVNCELCGEKTTISKMRVHVGKHILYSMRRRPDVELKSMGASPCGFCGLDSGCQTQLTFKKNGVA-VIKSTCPF------HYEKM--QYKAALEPTKASPCTNIPIHCRLCA 134
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BLAST of mRNA_L-elsbetiae_contig10859.787.1 vs. uniprot
Match: A0A4S4MVC7_9APHY (Uncharacterized protein n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4MVC7_9APHY)

HSP 1 Score: 61.2 bits (147), Expect = 3.380e-6
Identity = 42/134 (31.34%), Postives = 60/134 (44.78%), Query Frame = 3 
Query:  564 KVVCKLCTSQLTRSKMRMHVGGHILK-------DKVLQVSTVCGFCGGSGCRTTIKDPAGRAAPVMHSSCVYAPWNDARHETVAVKLKSARAGSRSSPCTNIVVKCIFCSQETY-----IWKYGMADHVTRCHN 929
            ++ C+LC      S+MR HVG HIL        D ++     CGFCG  GC   + D        + S+C Y       H T  +K   A   S ++PCTN+ + C+ C +        IWKY    H+T  H+
Sbjct:  771 EIQCQLCEVNTPLSRMRNHVGIHILHALRGIEDDGIVIGVDPCGFCGLEGCVVQMIDSDDGNTHRILSNCEY-------HYT-QMKYGPASRFSNATPCTNVPIHCLSCERTASGLPRTIWKYNALYHITLDHS 896
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10859.787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE1.890e-4654.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L2E6_9PHAE2.030e-3861.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNW9_ECTSI1.030e-2251.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5R3_9PHAE1.830e-1846.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8H8JBI3_9AGAM4.350e-829.86C2H2-type domain-containing protein n=1 Tax=Cerato... [more]
B0DV83_LACBS5.040e-736.21Predicted protein n=1 Tax=Laccaria bicolor (strain... [more]
A0A4S4MVC7_9APHY3.380e-631.34Uncharacterized protein n=1 Tax=Antrodiella citrin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10859contigL-elsbetiae_contig10859:3718..5485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1457
Cds size849
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10859.787.1prot_L-elsbetiae_contig10859.787.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10859 4326..5485 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815304.2154374-UTR-L-elsbetiae_contig10859:3717..43251622815304.2154374-UTR-L-elsbetiae_contig10859:3717..4325Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10859 3718..4325 +
1691682827.4656243-UTR-L-elsbetiae_contig10859:3717..43251691682827.4656243-UTR-L-elsbetiae_contig10859:3717..4325Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10859 3718..4325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815304.2249846-CDS-L-elsbetiae_contig10859:4325..43641622815304.2249846-CDS-L-elsbetiae_contig10859:4325..4364Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10859 4326..4364 +
1691682827.4745502-CDS-L-elsbetiae_contig10859:4325..43641691682827.4745502-CDS-L-elsbetiae_contig10859:4325..4364Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10859 4326..4364 +
1622815304.236827-CDS-L-elsbetiae_contig10859:4675..54851622815304.236827-CDS-L-elsbetiae_contig10859:4675..5485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10859 4676..5485 +
1691682827.4824014-CDS-L-elsbetiae_contig10859:4675..54851691682827.4824014-CDS-L-elsbetiae_contig10859:4675..5485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10859 4676..5485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10859.787.1

>prot_L-elsbetiae_contig10859.787.1 ID=prot_L-elsbetiae_contig10859.787.1|Name=mRNA_L-elsbetiae_contig10859.787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=283bp
MRMHVGGHILKDKVLQVSTVCGFCGGSGCRTTIKDPAGRAAPVMHSSCVY
APWNDARHETVAVKLKSARAGSRSSPCTNIVVKCIFCSQETYIWKYGMAD
HVTRCHNQETLVEDGTESAKKFKHDYTVSGSEKNAVLQKFKGGRPRNRRE
DDTLPPVVRRIVSGNGVPGRGVPGARPSESKEKEDDGEEQDDEKDEEEDG
EQEEEDEEQEEEEEEEEEEEEEEEDDQNDREDENEDEQPGGRGAGGNKRR
RAESSNGSSETPRENVGEPMRKSSRGRTIQTNV
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mRNA from alignment at L-elsbetiae_contig10859:3718..5485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10859.787.1 ID=mRNA_L-elsbetiae_contig10859.787.1|Name=mRNA_L-elsbetiae_contig10859.787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1768bp|location=Sequence derived from alignment at L-elsbetiae_contig10859:3718..5485+ (Laminarionema elsbetiae ELsaHSoW15)
CGGTACGCCCTCGGCCTGTTGTCCTCCACTGCAGCGCCGAGCGAGGAGAC
CCGGGCGGGCAGTGGAGAGGTTGTCAAAGGGAGGTTGATGAAGCTCCAAC
GGACCAGGCGTACGCTGGAGGCTGGAGCAGGAGCTTCCACTTCAGGTGTC
ATCCCGGCGACAAACAATGCGCCTGTTGAGGACTCGTGGGACCACTGGGG
AGAGCTGGGAATGCACAAAGGGGAACTATCGTGCAAGTGTCGCCTCTTCT
TTGCCGTTGAACCCTGACGAAGTCCAGGACCCTGTCGTAAAAGAGACCCT
GATACGCACCGTCCTTTGTGCGGGGGGGGGGCGATGACGGAAGAGTCGGT
TGAGACGGGAAAAGTTGTGCACCGCACTTCGTTTCGGTTCAGTCATTCTG
ACCTCGTGGCAGTGAGCAACACCCTCGTCGAAGAGTTGGGCACTCTCAAG
GCTTGGCAACTGCTCCCTCTCTGGAAAGTCGCAAACTTCCGATTCACGAA
AAACCATTCCATGTTGAGGCTGGCACGGTGGGTGCAGCTCCGGTCGGGGG
AACGGGCAGCAAGAAAGTCGTGTGCAAGCTGTGCACTTCCCAACTTACAC
GATCGAAAATGAGGATGCACGTCGGCGGGCACATTTTGAAGGACAAGGTG
CGAATATTTGTTTGATGTTTTGTCAGTGGCTTTGTGTATGCTGTATATAG
TAGTATTATCTTGATCGGGGTTTAGTGTCATTGAACGAGAGAGAGCGAAA
TCGTTAAAGTTGAATATCTTGTCCTTCTCTTTGCCTGAACCAATTCGTTG
CTCGGGCTTGCCTTTTTTCCAAGATACGCGTTGTAGTGGAAGTAGGTAAG
AGGTTTTGCTGGTTGCGGTGCCCACATCTTGAATGCATGTATAACTCCGG
CAAACCAGCACAAATCGCACCCTCGCTGGCCTTGGGTGTTCTCTCTCTCT
CATCGCAGGTTCTGCAGGTGAGCACTGTGTGCGGCTTCTGCGGTGGCTCC
GGATGCCGTACCACAATCAAGGATCCTGCTGGCAGGGCGGCCCCCGTCAT
GCACTCCAGCTGTGTATACGCTCCTTGGAACGACGCACGTCATGAGACGG
TCGCTGTTAAACTCAAAAGTGCGAGAGCAGGCTCCCGTTCCTCACCATGC
ACCAACATCGTCGTGAAATGCATCTTCTGCTCTCAGGAGACGTACATATG
GAAGTATGGCATGGCCGACCACGTTACCAGATGCCACAACCAGGAAACCC
TAGTTGAGGACGGCACCGAAAGCGCAAAGAAGTTCAAGCACGACTATACT
GTCTCGGGGAGCGAGAAGAACGCGGTGCTCCAAAAGTTCAAAGGCGGCAG
GCCTCGGAATCGTCGCGAGGACGACACTCTCCCCCCTGTAGTTCGTAGAA
TTGTGTCGGGGAACGGCGTGCCGGGCCGCGGTGTGCCGGGCGCCCGGCCC
TCAGAATCGAAGGAGAAGGAGGACGACGGCGAGGAGCAGGACGACGAAAA
GGACGAGGAGGAGGACGGGGAACAAGAAGAGGAAGATGAGGAGCAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGACGATCAG
AACGACCGCGAGGATGAGAACGAAGACGAACAGCCGGGAGGACGAGGAGC
CGGGGGGAACAAGAGGCGACGGGCGGAGAGTAGTAACGGTAGTAGCGAGA
CTCCGCGCGAGAACGTGGGAGAACCCATGCGCAAGAGTAGCCGGGGCAGA
ACGATTCAGACCAACGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10859:3718..5485+

>mRNA_L-elsbetiae_contig10859.787.1 ID=mRNA_L-elsbetiae_contig10859.787.1|Name=mRNA_L-elsbetiae_contig10859.787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1698bp|location=Sequence derived from alignment at L-elsbetiae_contig10859:3718..5485+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGATGCACGTCGGCGGGCACATTTTGAAGGACAAGATGAGGATGCA
CGTCGGCGGGCACATTTTGAAGGACAAGGTTCTGCAGGTGAGCACTGTGT
GCGGCTTCTGCGGTGGCTCCGGATGCCGTACCACAATCAAGGATCCTGCT
GGCAGGGCGGCCCCCGTCATGCACTCCAGCTGTGTATACGCTCCTTGGAA
CGACGCACGTCATGAGACGGTCGCTGTTAAACTCAAAAGTGCGAGAGCAG
GCTCCCGTTCCTCACCATGCACCAACATCGTCGTGAAATGCATCTTCTGC
TCTCAGGAGACGTACATATGGAAGTATGGCATGGCCGACCACGTTACCAG
ATGCCACAACCAGGAAACCCTAGTTGAGGACGGCACCGAAAGCGCAAAGA
AGTTCAAGCACGACTATACTGTCTCGGGGAGCGAGAAGAACGCGGTGCTC
CAAAAGTTCAAAGGCGGCAGGCCTCGGAATCGTCGCGAGGACGACACTCT
CCCCCCTGTAGTTCGTAGAATTGTGTCGGGGAACGGCGTGCCGGGCCGCG
GTGTGCCGGGCGCCCGGCCCTCAGAATCGAAGGAGAAGGAGGACGACGGC
GAGGAGCAGGACGACGAAAAGGACGAGGAGGAGGACGGGGAACAAGAAGA
GGAAGATGAGGAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAAGACGATCAGAACGACCGCGAGGATGAGAACGAAGACGAA
CAGCCGGGAGGACGAGGAGCCGGGGGGAACAAGAGGCGACGGGCGGAGAG
TAGTAACGGTAGTAGCGAGACTCCGCGCGAGAACGTGGGAGAACCCATGC
GCAAGAGTAGCCGGGGCAGAACGATTCAGACCAACGTTGTTCTGCAGGTG
AGCACTGTGTGCGGCTTCTGCGGTGGCTCCGGATGCCGTACCACAATCAA
GGATCCTGCTGGCAGGGCGGCCCCCGTCATGCACTCCAGCTGTGTATACG
CTCCTTGGAACGACGCACGTCATGAGACGGTCGCTGTTAAACTCAAAAGT
GCGAGAGCAGGCTCCCGTTCCTCACCATGCACCAACATCGTCGTGAAATG
CATCTTCTGCTCTCAGGAGACGTACATATGGAAGTATGGCATGGCCGACC
ACGTTACCAGATGCCACAACCAGGAAACCCTAGTTGAGGACGGCACCGAA
AGCGCAAAGAAGTTCAAGCACGACTATACTGTCTCGGGGAGCGAGAAGAA
CGCGGTGCTCCAAAAGTTCAAAGGCGGCAGGCCTCGGAATCGTCGCGAGG
ACGACACTCTCCCCCCTGTAGTTCGTAGAATTGTGTCGGGGAACGGCGTG
CCGGGCCGCGGTGTGCCGGGCGCCCGGCCCTCAGAATCGAAGGAGAAGGA
GGACGACGGCGAGGAGCAGGACGACGAAAAGGACGAGGAGGAGGACGGGG
AACAAGAAGAGGAAGATGAGGAGCAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAAGACGATCAGAACGACCGCGAGGATGAGAA
CGAAGACGAACAGCCGGGAGGACGAGGAGCCGGGGGGAACAAGAGGCGAC
GGGCGGAGAGTAGTAACGGTAGTAGCGAGACTCCGCGCGAGAACGTGGGA
GAACCCATGCGCAAGAGTAGCCGGGGCAGAACGATTCAGACCAACGTT
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