mRNA_L-elsbetiae_contig10853.785.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10853.785.1
Unique NamemRNA_L-elsbetiae_contig10853.785.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10853.785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10853contigL-elsbetiae_contig10853:5014..5370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size358
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815304.1178784-CDS-L-elsbetiae_contig10853:5013..53701622815304.1178784-CDS-L-elsbetiae_contig10853:5013..5370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10853 5014..5370 +
1691682827.405019-CDS-L-elsbetiae_contig10853:5013..53701691682827.405019-CDS-L-elsbetiae_contig10853:5013..5370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10853 5014..5370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10853.785.1prot_L-elsbetiae_contig10853.785.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10853 5014..5370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10853.785.1

>prot_L-elsbetiae_contig10853.785.1 ID=prot_L-elsbetiae_contig10853.785.1|Name=mRNA_L-elsbetiae_contig10853.785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
CPRSRLWTALKSSSNGGGGGGGVDSENRNPLPPNEAEKEERWEAGGGSSP
RDHRGGDVGPGSVSMTLGGSATTAAAAAVAAATPPKTEVSSSPAAGARLE
TDPRENGGDGDGAGRSAGR
back to top

mRNA from alignment at L-elsbetiae_contig10853:5014..5370+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10853.785.1 ID=mRNA_L-elsbetiae_contig10853.785.1|Name=mRNA_L-elsbetiae_contig10853.785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=357bp|location=Sequence derived from alignment at L-elsbetiae_contig10853:5014..5370+ (Laminarionema elsbetiae ELsaHSoW15)
TGTCCCCGAAGCCGCCTCTGGACCGCTCTCAAGAGCAGCAGCAACGGCGG
CGGCGGCGGCGGCGGCGTTGACAGCGAAAACCGCAACCCCCTCCCGCCCA
ACGAAGCCGAAAAGGAAGAGCGATGGGAGGCCGGCGGCGGCAGCTCCCCC
CGCGACCACCGCGGCGGCGATGTCGGTCCAGGCTCGGTCTCGATGACGCT
TGGAGGGAGCGCTACGACGGCGGCGGCGGCGGCGGTGGCCGCGGCAACGC
CGCCGAAGACGGAGGTTTCCTCCTCGCCAGCAGCTGGCGCGAGGCTGGAA
ACGGACCCGAGAGAGAACGGCGGAGACGGAGACGGGGCAGGGCGAAGTGC
AGGGCGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10853:5014..5370+

>mRNA_L-elsbetiae_contig10853.785.1 ID=mRNA_L-elsbetiae_contig10853.785.1|Name=mRNA_L-elsbetiae_contig10853.785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig10853:5014..5370+ (Laminarionema elsbetiae ELsaHSoW15)
TGTCCCCGAAGCCGCCTCTGGACCGCTCTCAAGAGCAGCAGCAACGGCGG
CGGCGGCGGCGGCGGCGTTGACAGCGAAAACCGCAACCCCCTCCCGCCCA
ACGAAGCCGAAAAGGAAGAGCGATGGGAGGCCGGCGGCGGCAGCTCCCCC
CGCGACCACCGCGGCGGCGATGTCGGTCCAGGCTCGGTCTCGATGACGCT
TGGAGGGAGCGCTACGACGGCGGCGGCGGCGGCGGTGGCCGCGGCAACGC
CGCCGAAGACGGAGGTTTCCTCCTCGCCAGCAGCTGGCGCGAGGCTGGAA
ACGGACCCGAGAGAGAACGGCGGAGACGGAGACGGGGCAGGGCGAAGTGC
AGGGCGCTGTCCCCGAAGCCGCCTCTGGACCGCTCTCAAGAGCAGCAGCA
ACGGCGGCGGCGGCGGCGGCGGCGTTGACAGCGAAAACCGCAACCCCCTC
CCGCCCAACGAAGCCGAAAAGGAAGAGCGATGGGAGGCCGGCGGCGGCAG
CTCCCCCCGCGACCACCGCGGCGGCGATGTCGGTCCAGGCTCGGTCTCGA
TGACGCTTGGAGGGAGCGCTACGACGGCGGCGGCGGCGGCGGTGGCCGCG
GCAACGCCGCCGAAGACGGAGGTTTCCTCCTCGCCAGCAGCTGGCGCGAG
GCTGGAAACGGACCCGAGAGAGAACGGCGGAGACGGAGACGGGGCAGGGC
GAAGTGCAGGGCGC
back to top