mRNA_L-elsbetiae_contig1084.776.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1084.776.1
Unique NamemRNA_L-elsbetiae_contig1084.776.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1084.776.1 vs. uniprot
Match: D8LLJ1_ECTSI (Carbonic anhydrase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ1_ECTSI)

HSP 1 Score: 456 bits (1172), Expect = 1.220e-153
Identity = 229/375 (61.07%), Postives = 278/375 (74.13%), Query Frame = 1
Query:    1 SKQAWTAPVARGLHGSGAALQPADIVGDSKNV----------WKTPTQMLNSVTSRSYNSSPVGSAMGVQVSDDVEELAGEEAP--KAHTCSDPNCSHASHNHL------------------EVDSDNASEDVGATFGAGTRQMSTAGGL-SGPPASHPVWNKPSLSHLIENNKKWVAGVKSEDPDYFKRLASIHTPEHLFIGCSDARLSVQSMLGLSPGEIFIHRNVANMVMHNDLSMLTVLTYAVDYLKVKNVIVCGHYECGGVRASMANNDHGLIENWIMGVKEVARTHSEELLALKDDELIHRRLVELNVQEQCLKLYNTPVLQKAHAEKGGPHVHGMVFDVGEGLVKELDVDFKSLVNKNSAIFSMYDFS 1032
            SKQAWT P++R LHG+GAALQP  I+G   NV          W +P  ML  ++SR Y     GSA+GVQVS DVEELAGEE P  K   C+ PNC                          + D+D+A ++VGATFG+G RQMS+   + +GPP  H +W KPSL  +++ NKKWVA VK+EDPD+FKRLASIHTPEH FIGCSD+RLSV++MLG  PGE+FIHRN+AN  MHND+S+L  L YAVDYL VKN+I+CGHYECGGVRA+MANNDHGL+ENW+MGVKEVAR H +EL+AL DDELIHRRLVELNVQEQC+KL+NTP+LQKAHAE+GGPHVH ++FD+ EGL+KELDVD ++LV + S   SMYDFS
Sbjct:   18 SKQAWTTPLSRSLHGAGAALQPVTIIGQPSNVVSDTTMIKKVWNSPGAMLQDISSRKY-----GSALGVQVSTDVEELAGEEPPSKKGKVCTGPNCCXXXXXXXXXXXXXXXXXXXXXXXEEDSDADSAVQEVGATFGSGRRQMSSKATVQAGPPDGHAMWQKPSLDKVMDANKKWVANVKAEDPDFFKRLASIHTPEHFFIGCSDSRLSVEAMLGCGPGEVFIHRNIANQFMHNDVSILASLHYAVDYLGVKNIILCGHYECGGVRAAMANNDHGLVENWVMGVKEVARMHQDELMALGDDELIHRRLVELNVQEQCVKLFNTPILQKAHAERGGPHVHAVIFDMAEGLIKELDVDLQALVKRTSHFQSMYDFS 387          
BLAST of mRNA_L-elsbetiae_contig1084.776.1 vs. uniprot
Match: A0A835YJA7_9STRA (Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJA7_9STRA)

HSP 1 Score: 298 bits (762), Expect = 2.430e-94
Identity = 130/206 (63.11%), Postives = 175/206 (84.95%), Query Frame = 1
Query:  412 LIENNKKWVAGVKSEDPDYFKRLASIHTPEHLFIGCSDARLSVQSMLGLSPGEIFIHRNVANMVMHNDLSMLTVLTYAVDYLKVKNVIVCGHYECGGVRASMANNDHGLIENWIMGVKEVARTHSEELLALKDDELIHRRLVELNVQEQCLKLYNTPVLQKAHAEKGGPHVHGMVFDVGEGLVKELDVDFKSLVNKNSAIFSMYDF 1029
            L++NN++WV    +EDPD+FK   S+H PE+LFIGCSDARLSVQ+MLGL  G++F+HRNVAN V++ DL+ +T LTYAV+YLKV+N+I+CGHY+CGGV+A+M N+DHG+IE WIMG+++VAR H +EL A+KD +L+HRR+VELNVQEQ LKLY  PV+Q++ A+ G PH+H +VFDVGEGL+KELDVDFK ++ K S ++SMY+F
Sbjct:    2 LLDNNRRWVERKLTEDPDFFKNQLSVHKPEYLFIGCSDARLSVQNMLGLEMGQLFVHRNVANQVVNTDLNFITCLTYAVEYLKVENIIICGHYDCGGVKAAMRNHDHGIIEQWIMGIRDVARYHRKELRAIKDPDLVHRRMVELNVQEQALKLYANPVVQRSQAQGGKPHIHALVFDVGEGLLKELDVDFKKIIKKYSHVYSMYNF 207          
BLAST of mRNA_L-elsbetiae_contig1084.776.1 vs. uniprot
Match: A0A6S9IM72_HETAK (Carbonic anhydrase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IM72_HETAK)

HSP 1 Score: 266 bits (680), Expect = 7.970e-82
Identity = 115/215 (53.49%), Postives = 167/215 (77.67%), Query Frame = 1
Query:  385 VWNKPSLSHLIENNKKWVAGVKSEDPDYFKRLASIHTPEHLFIGCSDARLSVQSMLGLSPGEIFIHRNVANMVMHNDLSMLTVLTYAVDYLKVKNVIVCGHYECGGVRASMANNDHGLIENWIMGVKEVARTHSEELLALKDDELIHRRLVELNVQEQCLKLYNTPVLQKAHAEKGGPHVHGMVFDVGEGLVKELDVDFKSLVNKNSAIFSMYDF 1029
            +++KPS   L ENN+KWVA  K  DPDYFK LA   +P++LFIGC+D+R+  Q +LGL  GE+F+HRNVAN+V++ D+++L VL Y+V+ LKV+++IVCGHYECGG++A+ AN+DHGL+E+W+  ++++ R H+EEL A++ +E  HRRLVELNVQEQC+ LY  P++QKA      P +HG V+D+ EGLVKEL +DFK+ ++K    +S+Y+F
Sbjct:   33 IFDKPSFEQLFENNRKWVAEQKKNDPDYFKNLAKGQSPKYLFIGCADSRIPAQEVLGLKCGELFVHRNVANLVVNGDMNLLAVLQYSVEVLKVEDIIVCGHYECGGIKAACANHDHGLVEHWLRNIRDINRLHAEELEAIECEEARHRRLVELNVQEQCINLYANPIVQKAQLATSLPRIHGFVYDIAEGLVKELPIDFKAEISKIKQHYSLYNF 247          
BLAST of mRNA_L-elsbetiae_contig1084.776.1 vs. uniprot
Match: A0A7S2XTK6_9STRA (Carbonic anhydrase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTK6_9STRA)

HSP 1 Score: 257 bits (656), Expect = 4.080e-78
Identity = 114/229 (49.78%), Postives = 163/229 (71.18%), Query Frame = 1
Query:  358 LSGPPASHPVWNKPSLSHLIENNKKWVAGVKSEDPDYFKRLASIHTPEHLFIGCSDARLSVQSMLGLSPGEIFIHRNVANMVMHNDLSMLTVLTYAVDYLKVKNVIVCGHYECGGVRA-SMANNDHGLIENWIMGVKEVARTHSEELLALKDDELIHRRLVELNVQEQCLKLYNTPVLQKAHAEKGGPHVHGMVFDVGEGLVKELDVDFKSLVNKNSAIFSMYDFSKTP 1041
            L G    H +W+K     + ENNKKWV     EDPDYFK+L     P +LFIGCSD+R+    ++GLS G++F+HRNVAN+V++ D+++L+VL Y+V+ LKV++VIVCGHY CGGV+A S    DHGL+E+W+  +K+V R H +EL  ++D+E  H RLVEL+VQEQC+ L+  P++Q++    G P +HG V+D+G G ++EL++DFK  V+K   I+S YDFSK P
Sbjct:   27 LPGKELYHSIWDKSDFQQIFENNKKWVHKHLEEDPDYFKKLKMGQKPRYLFIGCSDSRVPANEIMGLSAGDVFVHRNVANLVVNGDMNLLSVLQYSVEVLKVRDVIVCGHYGCGGVKAASTIGTDHGLLEHWLRNIKDVIRVHQDELNTIEDEEKRHERLVELSVQEQCINLFANPIVQRSQVTHGYPRIHGFVYDIGNGYLRELEIDFKKEVSKLKDIYSHYDFSKIP 255          
BLAST of mRNA_L-elsbetiae_contig1084.776.1 vs. uniprot
Match: A0A835ZBM8_9STRA (Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBM8_9STRA)

HSP 1 Score: 246 bits (629), Expect = 8.300e-74
Identity = 109/228 (47.81%), Postives = 164/228 (71.93%), Query Frame = 1
Query:  385 VWNKP-SLSHLIENNKKWVAGVKSEDPDYFKRLASIHTPEHLFIGCSDARLSVQSMLGLSPGEIFIHRNVANMVMHNDLSMLTVLTYAVDYLKVKNVIVCGHYECGGVRASMANNDHGLIENWIMGVKEVARTHSEELLALKDDELIHRRLVELNVQEQCLKLYNTPVLQKAHAEKGGPHVHGMVFDVGEGLVKELDVDFKSLVNKNSAIFSMYDFSKTP*SGEKARI 1065
            +W+   +L ++ ++NK+WV     EDP+ F RL     P++L+IGCSD+R+  Q+MLGL+ GE+F+HRNVAN+ ++ D S+L+VLTYAV+ L+V ++IVCGHY CGGVRA+M N DHGL+E+W+M ++ V R H  EL  + ++E  H+RLVELNVQE C+ L+  PV+QK  A    P +HG V+D+G GL+K+L +DF++ + K   I+S+Y+F K+  +G  A +
Sbjct:   13 IWDTAENLDYIFDSNKRWVQDCLEEDPEIFTRLKYAQAPKYLYIGCSDSRVPAQNMLGLTTGELFVHRNVANLCVNTDYSLLSVLTYAVEVLEVTDIIVCGHYGCGGVRAAMENKDHGLLEHWLMHIRNVQRLHQAELAEIPNEEERHQRLVELNVQEACMNLFANPVVQKKQATDAQPRIHGWVYDIGSGLLKDLKIDFRTEIRKYKNIYSLYEFPKSTIAGASAPV 240          
BLAST of mRNA_L-elsbetiae_contig1084.776.1 vs. uniprot
Match: A0A7S1N9X7_9EUGL (Carbonic anhydrase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N9X7_9EUGL)

HSP 1 Score: 244 bits (624), Expect = 6.110e-72
Identity = 108/211 (51.18%), Postives = 157/211 (74.41%), Query Frame = 1
Query:  400 SLSHLIENNKKWVAGVKSEDPDYFKRLASIHTPEHLFIGCSDARLSVQSMLGLSPGEIFIHRNVANMVMHNDLSMLTVLTYAVDYLKVKNVIVCGHYECGGVRASMANNDHGLIENWIMGVKEVARTHSEELLALKDDELIHRRLVELNVQEQCLKLYNTPVLQKAHAEKGGPHVHGMVFDVGEGLVKELDVDFKSLVNKNSAIFSMYDFS 1032
            +L  + ENN+KW   ++  DP++FKRL     P++LFIGC+D+R+  Q ++G+  GE+F+HRNVAN+V++NDL++L+V+ YAV+ L VK++IVCGHYECGGVRA+ +N DHGL+E+WI  +++V R H  EL  L   E+ HRRLVELNVQEQC+ L+  P++Q+  A  G P +HGMV+DVGEGL+++LD+DFK  + +   I+    FS
Sbjct:  133 NLETIFENNRKWAEQMRKTDPNFFKRLKQGQEPKYLFIGCADSRIPAQELMGMKAGEMFVHRNVANLVVNNDLNLLSVIAYAVEVLHVKDIIVCGHYECGGVRAAESNKDHGLVEHWIRNIRDVVRLHRNELAVLTG-EMRHRRLVELNVQEQCINLFANPIIQRRQAAHGLPRIHGMVYDVGEGLLRKLDLDFKHSIREMRHIYDTGHFS 342          
BLAST of mRNA_L-elsbetiae_contig1084.776.1 vs. uniprot
Match: A0A6H5KCQ9_9PHAE (Carbonic anhydrase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCQ9_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 8.950e-72
Identity = 139/276 (50.36%), Postives = 169/276 (61.23%), Query Frame = 1
Query:    1 SKQAWTAPVARGLHGSGAALQPADIVGDSKNV----------WKTPTQMLNSVTSRSYNSSPVGSAMGVQVSDDVEELAGEEAP--KAHTCSDPNCSHASHNHL------------------EVDSDNASEDVGATFGAGTRQMSTAG------GL------------------SGPPASHPVWNKPSLSHLIENNKKWVAGVKSEDPDYFKRLASIHTPEHLFIGCSDARLSVQSMLGLSPGEIFIHRNVANMVMHNDLSMLTVLTYAVDYLKVK 666
            +KQAWT P+ R LHG+GAALQP  I+G   NV          W +P  ML  ++SR Y     GSA+GVQVS DVEELAGEE P  KA  C+ PNC  A                       + D+D+A ++VGATFG+G RQMST G      GL                  +GP   H +W KPSL  +++ NKKWVA VK+EDPD+FKRLASIHTPEH FIGCSD+RLSV++MLG  PGE+FIHRN+AN  MHND+S+L  L YAVDYL V+
Sbjct:   34 TKQAWTTPLVRSLHGTGAALQPVTIIGQPSNVVSDTTMIKKVWNSPGAMLQDISSRKY-----GSALGVQVSTDVEELAGEEPPSKKAKVCTGPNCCDAPXXXXXXXXXXXXXXXXXXXXEEDSDADSAVQEVGATFGSGRRQMSTKGAYVYGIGLYFYFSHNFRAIQVSATIQAGPSDDHAMWKKPSLDKVMDANKKWVARVKAEDPDFFKRLASIHTPEHFFIGCSDSRLSVEAMLGCGPGEVFIHRNIANQFMHNDVSILASLHYAVDYLGVR 304          
BLAST of mRNA_L-elsbetiae_contig1084.776.1 vs. uniprot
Match: A0A1W6IYH0_SACJA (Carbonic anhydrase n=2 Tax=Saccharina japonica TaxID=88149 RepID=A0A1W6IYH0_SACJA)

HSP 1 Score: 242 bits (617), Expect = 1.300e-71
Identity = 106/212 (50.00%), Postives = 156/212 (73.58%), Query Frame = 1
Query:  400 SLSHLIENNKKWVAGVKSEDPDYFKRLASIHTPEHLFIGCSDARLSVQSMLGLSPGEIFIHRNVANMVMHNDLSMLTVLTYAVDYLKVKNVIVCGHYECGGVRASMANNDHGLIENWIMGVKEVARTHSEELLALKDDELIHRRLVELNVQEQCLKLYNTPVLQKAHAEKGGPHVHGMVFDVGEGLVKELDVDFKSLVNKNSAIFSMYDFSK 1035
            S+ ++ +NN+ WV G  SEDPD FKRLA+   P++L+IGCSD+R+  Q+M+GL+ GE+F+ RNVAN+ ++ D S+L  LTYAV+ L+V ++IVCGHY CGGVRA+M N DHGL+E+W++ ++ V R H +EL  + D +  H+RLVELNVQE C+ L+  P++QK  A    P +HG V+DV  GL+K+LD+DFKS + K   ++ +Y+F +
Sbjct:   82 SMDYIFQNNRDWVEGTISEDPDTFKRLATSQQPKYLYIGCSDSRVPAQNMMGLTTGELFVVRNVANLCVNTDHSLLAALTYAVNVLEVTDIIVCGHYGCGGVRAAMENVDHGLLEHWLLNIRNVQRLHLDELKTIPDVDERHKRLVELNVQESCINLFANPIVQKKQATSSQPKIHGWVYDVATGLLKKLDIDFKSEIRKYQDVYRLYEFPR 293          
BLAST of mRNA_L-elsbetiae_contig1084.776.1 vs. uniprot
Match: A0A662WWC2_9STRA (Carbonic anhydrase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WWC2_9STRA)

HSP 1 Score: 234 bits (597), Expect = 1.110e-68
Identity = 98/210 (46.67%), Postives = 154/210 (73.33%), Query Frame = 1
Query:  400 SLSHLIENNKKWVAGVKSEDPDYFKRLASIHTPEHLFIGCSDARLSVQSMLGLSPGEIFIHRNVANMVMHNDLSMLTVLTYAVDYLKVKNVIVCGHYECGGVRASMANNDHGLIENWIMGVKEVARTHSEELLALKDDELIHRRLVELNVQEQCLKLYNTPVLQKAHAEKGGPHVHGMVFDVGEGLVKELDVDFKSLVNKNSAIFSMYDF 1029
            S+ HL +NNKKW   +   DP +F+R+A   TP +L+IGCSD+R+  + + GL+PGE+F+HRNVAN+V+ ND++ L+V+ +AV+ LKVK++IVCGHY CGGV+A+M N   GL++NW+  +++V R H +EL+AL   E  +RRLVELN+QEQCL ++   ++Q+     G PH+HG+V+D+  G +KEL+VD++  + K+  ++ ++ F
Sbjct:   15 SIQHLFDNNKKWRETMVQRDPTFFERMAVGQTPRYLWIGCSDSRVPAEEVSGLNPGEVFVHRNVANLVVSNDINALSVVQFAVEKLKVKDIIVCGHYGCGGVKAAMKNKQIGLLDNWLRNIRDVCRLHKDELVALPTQEARYRRLVELNIQEQCLNIFKINMVQRRQGRYGHPHIHGLVYDINTGALKELEVDYREYIAKHIGVYRLHTF 224          
BLAST of mRNA_L-elsbetiae_contig1084.776.1 vs. uniprot
Match: G4ZL70_PHYSP (Carbonic anhydrase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZL70_PHYSP)

HSP 1 Score: 234 bits (597), Expect = 1.290e-68
Identity = 101/210 (48.10%), Postives = 153/210 (72.86%), Query Frame = 1
Query:  400 SLSHLIENNKKWVAGVKSEDPDYFKRLASIHTPEHLFIGCSDARLSVQSMLGLSPGEIFIHRNVANMVMHNDLSMLTVLTYAVDYLKVKNVIVCGHYECGGVRASMANNDHGLIENWIMGVKEVARTHSEELLALKDDELIHRRLVELNVQEQCLKLYNTPVLQKAHAEKGGPHVHGMVFDVGEGLVKELDVDFKSLVNKNSAIFSMYDF 1029
            SLSHL+ENN+KW   V   DP +F+R A   +P +L+IGCSD+R+  + + GL+PGE+F+HRNVAN+V+ ND++ L+V+ ++V+ LKV ++IVCGHY CGGV A++ N   GL++NW+  +++V RTH EEL   K DE   RRLVELN+QEQCL ++   ++Q+     G P +HGMV+D+  G++KEL+VD+ + + KN  +F +++F
Sbjct:   22 SLSHLLENNRKWRDNVLQRDPTFFERTAKAQSPRYLWIGCSDSRVPAEEITGLNPGEMFVHRNVANLVVSNDINSLSVVQFSVEKLKVSDIIVCGHYGCGGVTAALKNAQIGLLDNWLRNIRDVCRTHKEELSQYKTDEERERRLVELNIQEQCLNIFKINMVQRRMGLYGAPRIHGMVYDIRSGVLKELEVDYHAFIAKNMGVFRLHNF 231          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1084.776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLJ1_ECTSI1.220e-15361.07Carbonic anhydrase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835YJA7_9STRA2.430e-9463.11Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6S9IM72_HETAK7.970e-8253.49Carbonic anhydrase n=1 Tax=Heterosigma akashiwo Ta... [more]
A0A7S2XTK6_9STRA4.080e-7849.78Carbonic anhydrase n=1 Tax=Fibrocapsa japonica Tax... [more]
A0A835ZBM8_9STRA8.300e-7447.81Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S1N9X7_9EUGL6.110e-7251.18Carbonic anhydrase n=1 Tax=Eutreptiella gymnastica... [more]
A0A6H5KCQ9_9PHAE8.950e-7250.36Carbonic anhydrase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A1W6IYH0_SACJA1.300e-7150.00Carbonic anhydrase n=2 Tax=Saccharina japonica Tax... [more]
A0A662WWC2_9STRA1.110e-6846.67Carbonic anhydrase n=2 Tax=Nothophytophthora sp. C... [more]
G4ZL70_PHYSP1.290e-6848.10Carbonic anhydrase n=1 Tax=Phytophthora sojae (str... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1084contigL-elsbetiae_contig1084:7968..11893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score417.2
Seed ortholog evalue6.9e-114
Seed eggNOG ortholog2880.D8LLJ1
KEGG rclassRC02807
KEGG koko:K01673
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
Hectar predicted targeting categoryother localisation
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGsCOG0288@1,KOG1578@2759
EC4.2.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptioncarbonic anhydrase
Ec32 orthologEc-22_001150.1
Exons10
Model size1790
Cds size930
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1084.776.1prot_L-elsbetiae_contig1084.776.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1084 8453..11147 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815302.310768-UTR-L-elsbetiae_contig1084:7967..80571622815302.310768-UTR-L-elsbetiae_contig1084:7967..8057Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1084 7968..8057 +
1691682826.211474-UTR-L-elsbetiae_contig1084:7967..80571691682826.211474-UTR-L-elsbetiae_contig1084:7967..8057Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1084 7968..8057 +
1622815302.3262181-UTR-L-elsbetiae_contig1084:8428..84521622815302.3262181-UTR-L-elsbetiae_contig1084:8428..8452Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1084 8429..8452 +
1691682826.2268095-UTR-L-elsbetiae_contig1084:8428..84521691682826.2268095-UTR-L-elsbetiae_contig1084:8428..8452Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1084 8429..8452 +
1622815302.445358-UTR-L-elsbetiae_contig1084:11147..118931622815302.445358-UTR-L-elsbetiae_contig1084:11147..11893Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1084 11148..11893 +
1691682826.3447256-UTR-L-elsbetiae_contig1084:11147..118931691682826.3447256-UTR-L-elsbetiae_contig1084:11147..11893Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1084 11148..11893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815302.338458-CDS-L-elsbetiae_contig1084:8452..85361622815302.338458-CDS-L-elsbetiae_contig1084:8452..8536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 8453..8536 +
1691682826.239138-CDS-L-elsbetiae_contig1084:8452..85361691682826.239138-CDS-L-elsbetiae_contig1084:8452..8536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 8453..8536 +
1622815302.3510952-CDS-L-elsbetiae_contig1084:8685..88481622815302.3510952-CDS-L-elsbetiae_contig1084:8685..8848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 8686..8848 +
1691682826.2517354-CDS-L-elsbetiae_contig1084:8685..88481691682826.2517354-CDS-L-elsbetiae_contig1084:8685..8848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 8686..8848 +
1622815302.3638303-CDS-L-elsbetiae_contig1084:9078..91481622815302.3638303-CDS-L-elsbetiae_contig1084:9078..9148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 9079..9148 +
1691682826.2730186-CDS-L-elsbetiae_contig1084:9078..91481691682826.2730186-CDS-L-elsbetiae_contig1084:9078..9148Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 9079..9148 +
1622815302.3767276-CDS-L-elsbetiae_contig1084:9333..94541622815302.3767276-CDS-L-elsbetiae_contig1084:9333..9454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 9334..9454 +
1691682826.282352-CDS-L-elsbetiae_contig1084:9333..94541691682826.282352-CDS-L-elsbetiae_contig1084:9333..9454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 9334..9454 +
1622815302.388869-CDS-L-elsbetiae_contig1084:9653..97611622815302.388869-CDS-L-elsbetiae_contig1084:9653..9761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 9654..9761 +
1691682826.2905824-CDS-L-elsbetiae_contig1084:9653..97611691682826.2905824-CDS-L-elsbetiae_contig1084:9653..9761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 9654..9761 +
1622815302.3979235-CDS-L-elsbetiae_contig1084:9911..100491622815302.3979235-CDS-L-elsbetiae_contig1084:9911..10049Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 9912..10049 +
1691682826.2989097-CDS-L-elsbetiae_contig1084:9911..100491691682826.2989097-CDS-L-elsbetiae_contig1084:9911..10049Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 9912..10049 +
1622815302.4109404-CDS-L-elsbetiae_contig1084:10380..104491622815302.4109404-CDS-L-elsbetiae_contig1084:10380..10449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 10381..10449 +
1691682826.312333-CDS-L-elsbetiae_contig1084:10380..104491691682826.312333-CDS-L-elsbetiae_contig1084:10380..10449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 10381..10449 +
1622815302.4249864-CDS-L-elsbetiae_contig1084:10785..109161622815302.4249864-CDS-L-elsbetiae_contig1084:10785..10916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 10786..10916 +
1691682826.3237777-CDS-L-elsbetiae_contig1084:10785..109161691682826.3237777-CDS-L-elsbetiae_contig1084:10785..10916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 10786..10916 +
1622815302.4357324-CDS-L-elsbetiae_contig1084:11101..111471622815302.4357324-CDS-L-elsbetiae_contig1084:11101..11147Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 11102..11147 +
1691682826.3352344-CDS-L-elsbetiae_contig1084:11101..111471691682826.3352344-CDS-L-elsbetiae_contig1084:11101..11147Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1084 11102..11147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1084.776.1

>prot_L-elsbetiae_contig1084.776.1 ID=prot_L-elsbetiae_contig1084.776.1|Name=mRNA_L-elsbetiae_contig1084.776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=310bp
MLNSVTSRSYNSSPVGSAMGVQVSDDVEELAGEEAPKAHTCSDPNCSHAS
HNHLEVDSDNASEDVGATFGAGTRQMSTAGGLSGPPASHPVWNKPSLSHL
IENNKKWVAGVKSEDPDYFKRLASIHTPEHLFIGCSDARLSVQSMLGLSP
GEIFIHRNVANMVMHNDLSMLTVLTYAVDYLKVKNVIVCGHYECGGVRAS
MANNDHGLIENWIMGVKEVARTHSEELLALKDDELIHRRLVELNVQEQCL
KLYNTPVLQKAHAEKGGPHVHGMVFDVGEGLVKELDVDFKSLVNKNSAIF
SMYDFSKTP*
back to top

mRNA from alignment at L-elsbetiae_contig1084:7968..11893+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1084.776.1 ID=mRNA_L-elsbetiae_contig1084.776.1|Name=mRNA_L-elsbetiae_contig1084.776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3926bp|location=Sequence derived from alignment at L-elsbetiae_contig1084:7968..11893+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAAGCAGGCCTGGACTGCCCCTGTGGCCCGTGGCCTCCACGGATCCGG CGCGGCCCTCCAGCCCGCAGACATTGTCGGTGACTCCAAGGTGATTATTT TCTCATCCAGCAGGCAACGGACCTAATGCCATCGCCAACTGCCACATCCT TTCGCTCGTAGCCCGCGGGCCAGTTTTGAGAATAGTTGAACAAATCACGA GTACCGTCAACTTGCCTCATGATATATAGCTGCCTCGTTGATAGCGGTGG CGATCGCAAAGTTGATTGAACACCTGATGTCCAGATTGTCAGGAAGGGAT TTCGGACGGAAACGCGTGATTTTGGTTGAACAGCAGCATCATTGCGCACG CAGCATGCACCCTCACGTGCATATGCGGGGTGAATAATTCCCTTTAAAGT TTTGGTTCCAAATCTTTTGACCTGTGCCGAACAATCGAATCTTTGATCTT GACCAAATCAGAACGTATGGAAGACCCCGACCCAGATGCTCAACTCCGTC ACCAGCCGCAGCTACAACAGTTCCCCCGTGGGCTCCGCCATGGGCGTGCA AGTCAGCGACGACGTCGAAGTAAGTTTCAGCAAGCGGATATATGAGTATG AAGGCAGTTTGTTTCGTTTGACATCAAACTGAACTCAAGTGGTTTCTATC CATCCGAATACGAAAGCTTGCAACCATGCATTGATGACAAGACCGACCTT GAATGTCTTCACTCGCAGGAGCTCGCCGGCGAGGAGGCGCCCAAGGCCCA CACCTGCAGCGACCCCAACTGCAGCCACGCTAGCCACAACCACTTGGAGG TGGACAGCGACAACGCGAGCGAGGACGTCGGCGCCACCTTCGGCGCCGGC ACCCGCCAGATGTCCACTGCCGGTGGGTTGTGTGTGTAGTATGATACTCT TCTGGTGTGTTGACAGCAGCTGAAATGTTGGTCCGAGCGTGGTTTTCAAG TCGTGTCTTTCGTTGACTGTAAATCCAGTAGGCAAAAAATTGTCCCAAGT CCTGACCGACCCACTCGGGAGCTGTGCCGTCTGAACCGCTTCGCTTTCGC TCGTGCGCGCCTGTCGCGTGTCCTGTATGTCGCCCGCCCTCCACCCGTCT GAAACACACAGCCGGCCCCCCGGCCTCGCACCCCGTCTGGAACAAGCCTT CGCTGTCCCACCTGATCGAGAACAACAAGAAGTGAGTTCAAGAGAGCCGC GTTTTCGCTTAATCCTTCCTTGGCCAAGCTTGATGTACTTATTTGCAAAA TTGAGGTGCTCCGAAAGATGCAATTATTAATAAATCACTTTTTGCCCCCC CCCCTCGCGCGCTTCATTTCTACGTTTCCGCACTTGCTTGAATGGTTTTC CTTGAAAAACACACAGGTGGGTTGCTGGCGTGAAGTCCGAGGACCCCGAC TACTTCAAGAGGCTGGCGTCCATCCACACCCCCGAGCACCTGTTCATCGG ATGCTCCGACGCCCGCCTTTCCGTGCAGAGCATGCTCGTGAGTACACGCC TCTTGTGATGGCAAGGGTAATGATCGCCACGAGGTTTGGTTTGGACGCCG CAACTGCTGTCTGTACAACTACACTTAAAACCTGGAGACGTCATTTTTTA GTTTGTTTTTTCAAGCGTCTCGACTGACGGCTTGTGTGTGCCTCCCTCGA ATATTTGTTCTCCCTTGCCATTTTTTCGTGTGGCAGGGCCTCAGCCCTGG AGAGATCTTCATCCACCGCAACGTCGCCAACATGGTGATGCACAACGACC TCAGCATGCTCACCGTGCTTACCTACGCGGTGGACTACTTGAAGGTACGT GCCTATGCGAGCACAGACGCTTCGGAATATTCACTCCGAAGAGTACAGCT TGTTTTATTACTTGCAAAATACGCTAGTTGACGGTTATTGTCGTTTTAAT GCCCGACCCTGACGTAGGATTTTCTCAAATGTTGACGCACGCAGGTCAAG AACGTCATCGTGTGCGGCCACTACGAATGCGGCGGTGTCCGCGCCTCCAT GGCCAACAACGACCACGGCCTCATCGAGAACTGGATCATGGGCGTGAAGG AGGTCGCCAGGACACACAGCGAGGAGCTCTTGGTAAGCTGGAACTCAAAA ACAAAACGGCAATACATGTCACAAGTTTGTACGTGACACGGTCTGAAATG TCTTTTTTGTGAAACATTTCTTTTTCGTTGCTTCATGCTAGGATTACATC CAAGAATTTGATACCGCTACTCGAACACCGCTCACCGCTTTTCGTCACGA CACGGTTTAAAATATCTTTTCTGTGGCACAATTCTTTGTTGTTTCATGCT AGGACTACCTACATCCAAGAATTTGATACCGCTAATCAATACCGCTTCCG GTCGGAACGATACATTTTCATGCCTGACTTAACTTTTCTCACCTATTCTC CTTTCTCGTGCAGGCCCTCAAAGACGACGAGCTGATCCACCGCCGCCTGG TCGAGCTTAACGTCCAGGAGCAGTGCCTCAAGGTTTGTGAAATTCCTGTA AATCGTATTCCATGTGTTTTAATAAAGTGACCGTGTCGCACGGCCGTTGG TTGCTATGATAGATGTTTTTTTTCTTTTTTTCTGCCCATTATTGGATTTT GTCGGCTGTCCCTCTGGCCCCCATCCTCCACTTCTACTCTAGCTAGACGA CCTAACCGGGGTCACATAGGTGTGTGATACAAGGTCAAGATTTCCTGCCA AGACAAAAAAATGCAATCGAAAAATTGTATATCCAAGTCCCATGTGAAGC TATATTTTCTTGCTCTTTTCATAACCCACACTACATTTTTATTTTTTATT TTCTGCTCCGCTTCGCAGCTGTACAACACCCCCGTGCTCCAGAAGGCCCA CGCCGAGAAGGGCGGCCCCCACGTCCACGGCATGGTGTTCGACGTCGGAG AGGGACTCGTGAAGGAACTCGACGTGGACTTCAAATCGTTGGTGAACAAG TGAGTCAAATCATTTTTTAGTGCGTTGTCCAGTCCCGAGGCGCGTGTAGG AAATAAGTCGCCCGAAACAAGTGTTCGGGTTCAAACACAATTTAAAAATA TTTTCTGCAATTTGTTGTGACTTCAAAAAAACTACGAGTAATTACTAACT TGAATCTCTCCAATATAATGTTCGATTATTTCAGGAACTCCGCGATCTTC TCCATGTACGACTTTTCCAAGACCCCTTGAAGTGGAGAAAAAGCGAGAAT TTTTGACGGGTGAACGCGAGAAAGCCGTTTAAACGCAAAGCACCCTAGAG AAGAAAAAGCTTGCGGGACAAAACCTGGTTTTGTTCTATTTTTGAACCTT GTGTAATTTACGTGATGGCCTTCGTGGTTGGTGTTGTGTCGAGAGCGGAA TGCCTCCGACACCTGCCGATTTTTGTGTTTGGAGCGTGTGTAGACTACGA ACTACTACGAGCTACAGATGGGAGCCCAGAGTACATATATGCTCCGCACG GGCCACACCAGGTAGAGCTACCACAAGCAGCGGAACCATCCGCTTTTGGC GCACACAGGAGAACATCGGCGATTTGTTTTTTTTGCGAGGCTTTTATGTA GAGTGGAATTTGGAGGTGGGAAGTAAGTAGAGGGAGTCTTCTTAGTGGGA GATTATACAGGAGCGCTATTGGGGAAGAAGCTGCAAGGTAGACAGGCGAC GGTGGAGTCACTTTGTAGCTATTTCCCTTTGCATGATATTAGAGACGTTG ATTATAGTGTGAAATAGAACTTCAACCATATTTTTCAACTTGTTTGTGCT GTTTCGAGCGAAGACTTGAATGTCACAAGCTACCGCATCAACTTTGGCGC GGGAGCGGTGTAAAAACTGCAATCAGCAGGTTTGGTCTTGTTGAATAACA TCACCACTAGCCAAACGATTCAATCCTATGGGAAAAAAACCCGCCGCATG TTTGAGACATTTTTTTAAATTCTTGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1084:7968..11893+

>mRNA_L-elsbetiae_contig1084.776.1 ID=mRNA_L-elsbetiae_contig1084.776.1|Name=mRNA_L-elsbetiae_contig1084.776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1860bp|location=Sequence derived from alignment at L-elsbetiae_contig1084:7968..11893+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCAACTCCGTCACCAGCCGCAGCTACAACAGTTCCCCCGTGGGCTC
CGCCATGGGCGTGCAAGTCAGCGACGACGTCGAAATGCTCAACTCCGTCA
CCAGCCGCAGCTACAACAGTTCCCCCGTGGGCTCCGCCATGGGCGTGCAA
GTCAGCGACGACGTCGAAGAGCTCGCCGGCGAGGAGGCGCCCAAGGCCCA
CACCTGCAGCGACCCCAACTGCAGCCACGCTAGCCACAACCACTTGGAGG
TGGACAGCGACAACGCGAGCGAGGACGTCGGCGCCACCTTCGGCGCCGGC
ACCCGCCAGATGTCCACTGCCGGTGGGTTGTGAGCTCGCCGGCGAGGAGG
CGCCCAAGGCCCACACCTGCAGCGACCCCAACTGCAGCCACGCTAGCCAC
AACCACTTGGAGGTGGACAGCGACAACGCGAGCGAGGACGTCGGCGCCAC
CTTCGGCGCCGGCACCCGCCAGATGTCCACTGCCGGTGGGTTGTCCGGCC
CCCCGGCCTCGCACCCCGTCTGGAACAAGCCTTCGCTGTCCCACCTGATC
GAGAACAACAAGAACCGGCCCCCCGGCCTCGCACCCCGTCTGGAACAAGC
CTTCGCTGTCCCACCTGATCGAGAACAACAAGAAGTGGGTTGCTGGCGTG
AAGTCCGAGGACCCCGACTACTTCAAGAGGCTGGCGTCCATCCACACCCC
CGAGCACCTGTTCATCGGATGCTCCGACGCCCGCCTTTCCGTGCAGAGCA
TGCTCGTGGGTTGCTGGCGTGAAGTCCGAGGACCCCGACTACTTCAAGAG
GCTGGCGTCCATCCACACCCCCGAGCACCTGTTCATCGGATGCTCCGACG
CCCGCCTTTCCGTGCAGAGCATGCTCGGCCTCAGCCCTGGAGAGATCTTC
ATCCACCGCAACGTCGCCAACATGGTGATGCACAACGACCTCAGCATGCT
CACCGTGCTTACCTACGCGGTGGACTACTTGAAGGGCCTCAGCCCTGGAG
AGATCTTCATCCACCGCAACGTCGCCAACATGGTGATGCACAACGACCTC
AGCATGCTCACCGTGCTTACCTACGCGGTGGACTACTTGAAGGTCAAGAA
CGTCATCGTGTGCGGCCACTACGAATGCGGCGGTGTCCGCGCCTCCATGG
CCAACAACGACCACGGCCTCATCGAGAACTGGATCATGGGCGTGAAGGAG
GTCGCCAGGACACACAGCGAGGAGCTCTTGGTCAAGAACGTCATCGTGTG
CGGCCACTACGAATGCGGCGGTGTCCGCGCCTCCATGGCCAACAACGACC
ACGGCCTCATCGAGAACTGGATCATGGGCGTGAAGGAGGTCGCCAGGACA
CACAGCGAGGAGCTCTTGGCCCTCAAAGACGACGAGCTGATCCACCGCCG
CCTGGTCGAGCTTAACGTCCAGGAGCAGTGCCTCAAGGCCCTCAAAGACG
ACGAGCTGATCCACCGCCGCCTGGTCGAGCTTAACGTCCAGGAGCAGTGC
CTCAAGCTGTACAACACCCCCGTGCTCCAGAAGGCCCACGCCGAGAAGGG
CGGCCCCCACGTCCACGGCATGGTGTTCGACGTCGGAGAGGGACTCGTGA
AGGAACTCGACGTGGACTTCAAATCGTTGGTGAACAACTGTACAACACCC
CCGTGCTCCAGAAGGCCCACGCCGAGAAGGGCGGCCCCCACGTCCACGGC
ATGGTGTTCGACGTCGGAGAGGGACTCGTGAAGGAACTCGACGTGGACTT
CAAATCGTTGGTGAACAAGAACTCCGCGATCTTCTCCATGTACGACTTTT
CCAAGACCCCTTGAGAACTCCGCGATCTTCTCCATGTACGACTTTTCCAA
GACCCCTTGA
back to top