mRNA_L-elsbetiae_contig1084.775.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1084.775.1 vs. uniprot
Match: A0A6H5KSI2_9PHAE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI2_9PHAE) HSP 1 Score: 172 bits (436), Expect = 1.060e-47 Identity = 92/105 (87.62%), Postives = 95/105 (90.48%), Query Frame = 2 Query: 137 MLRAGSRFARKLARATKPSREYHATPAARMVVGGGAQNASVNGGDITSKYQIIDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAA 451 MLR+ SR KL RATK R+YHAT AAR+VVGGGAQ ASVNGGDITSKYQIIDHEYDAVVV AGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAA Sbjct: 1 MLRSSSRLGHKLVRATKGLRDYHATSAARVVVGGGAQEASVNGGDITSKYQIIDHEYDAVVVRAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAA 105
BLAST of mRNA_L-elsbetiae_contig1084.775.1 vs. uniprot
Match: A0A8H7UXE1_9FUNG (FAD_binding_2 domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7UXE1_9FUNG) HSP 1 Score: 110 bits (275), Expect = 9.400e-28 Identity = 65/105 (61.90%), Postives = 70/105 (66.67%), Query Frame = 2 Query: 137 MLRAGSRFARKLARATKPSREYHATPAARMVVGGGAQNASVNGGDITSKYQIIDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAA 451 L++ S A + A +R H A V+ A G I SKY IIDHEYDAVVVGAGGAGLRAA G AEAGL TACITKLFPTRSHTVAAQGGINAA Sbjct: 4 FLQSSSPKALRAANGRMAARGLHYAKPAMQVMSTNPLRAQEASGSIASKYPIIDHEYDAVVVGAGGAGLRAAFGLAEAGLNTACITKLFPTRSHTVAAQGGINAA 108
BLAST of mRNA_L-elsbetiae_contig1084.775.1 vs. uniprot
Match: A0A024GCU7_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GCU7_9STRA) HSP 1 Score: 115 bits (288), Expect = 4.570e-27 Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 2 Query: 269 DITSKYQIIDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAA 451 D+TSKY IIDHEYDAV+VGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAA Sbjct: 36 DLTSKYTIIDHEYDAVIVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAA 96
BLAST of mRNA_L-elsbetiae_contig1084.775.1 vs. uniprot
Match: A0A2P4YK26_9STRA (Succinate dehydrogenase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YK26_9STRA) HSP 1 Score: 111 bits (277), Expect = 5.820e-27 Identity = 55/60 (91.67%), Postives = 59/60 (98.33%), Query Frame = 2 Query: 272 ITSKYQIIDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAA 451 +TSKY ++DHEYDAVVVGAGGAGLRAAMGCAEAGLKTACI+KLFPTRSHTVAAQGGINAA Sbjct: 40 LTSKYTVVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACISKLFPTRSHTVAAQGGINAA 99
BLAST of mRNA_L-elsbetiae_contig1084.775.1 vs. uniprot
Match: A0A7S0STC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0STC0_9STRA) HSP 1 Score: 112 bits (280), Expect = 9.630e-27 Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 2 Query: 254 SVNG---GDITSKYQIIDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAA 451 SVNG D+TSKY I+DH+YD VVVGAGGAGLRAAMGCAEAG KTAC+TKLFPTRSHTVAAQGGINAA Sbjct: 25 SVNGKLANDLTSKYTIVDHDYDCVVVGAGGAGLRAAMGCAEAGFKTACVTKLFPTRSHTVAAQGGINAA 93
BLAST of mRNA_L-elsbetiae_contig1084.775.1 vs. uniprot
Match: UPI000867A627 (succinate dehydrogenase n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=UPI000867A627) HSP 1 Score: 113 bits (282), Expect = 2.980e-26 Identity = 60/86 (69.77%), Postives = 66/86 (76.74%), Query Frame = 2 Query: 194 REYHATPAARMVVGGGAQNASVNGGDITSKYQIIDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAA 451 R +HAT ++G A G I+SKY +IDHEYDA+VVGAGGAGLRAA G AEAGL TACITKLFPTRSHTVAAQGGINAA Sbjct: 18 RAFHATRPGARIIGSQPLRAQEASGAISSKYPVIDHEYDAIVVGAGGAGLRAAFGLAEAGLNTACITKLFPTRSHTVAAQGGINAA 103
BLAST of mRNA_L-elsbetiae_contig1084.775.1 vs. uniprot
Match: A0A2D4C5W6_PYTIN (Succinate dehydrogenase flavoprotein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5W6_PYTIN) HSP 1 Score: 108 bits (269), Expect = 3.030e-26 Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 2 Query: 272 ITSKYQIIDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAA 451 +TSKY ++DHEYD VVVGAGGAGLRAAMGCAEAG KTACI+KLFPTRSHTVAAQGGINAA Sbjct: 36 LTSKYTVVDHEYDVVVVGAGGAGLRAAMGCAEAGFKTACISKLFPTRSHTVAAQGGINAA 95
BLAST of mRNA_L-elsbetiae_contig1084.775.1 vs. uniprot
Match: A0A0E9NPU4_SAICN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NPU4_SAICN) HSP 1 Score: 113 bits (282), Expect = 3.440e-26 Identity = 60/86 (69.77%), Postives = 66/86 (76.74%), Query Frame = 2 Query: 194 REYHATPAARMVVGGGAQNASVNGGDITSKYQIIDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAA 451 R +HAT ++G A G I+SKY +IDHEYDA+VVGAGGAGLRAA G AEAGL TACITKLFPTRSHTVAAQGGINAA Sbjct: 556 RAFHATRPGARIIGSQPLRAQEASGAISSKYPVIDHEYDAIVVGAGGAGLRAAFGLAEAGLNTACITKLFPTRSHTVAAQGGINAA 641
BLAST of mRNA_L-elsbetiae_contig1084.775.1 vs. uniprot
Match: G0SCP6_CHATD (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=7 Tax=Sordariales TaxID=5139 RepID=G0SCP6_CHATD) HSP 1 Score: 112 bits (281), Expect = 4.120e-26 Identity = 64/96 (66.67%), Postives = 74/96 (77.08%), Query Frame = 2 Query: 170 LARATKPS-REYHAT-PAARMVVGGGAQNASVNGGDITSKYQIIDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAA 451 LARA +PS R + T PAAR++V G A +++KY +IDHEYDAVV+GAGGAGLRAA G AEAG TACI+KLFPTRSHTVAAQGGINAA Sbjct: 16 LARAARPSVRAFSTTRPAARVIVPNGVLRAKEASPHVSNKYAVIDHEYDAVVIGAGGAGLRAAFGLAEAGFNTACISKLFPTRSHTVAAQGGINAA 111
BLAST of mRNA_L-elsbetiae_contig1084.775.1 vs. uniprot
Match: H3GIQ9_PHYRM (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=25 Tax=Peronosporaceae TaxID=4777 RepID=H3GIQ9_PHYRM) HSP 1 Score: 112 bits (280), Expect = 5.610e-26 Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 2 Query: 251 ASVNGGDITSKYQIIDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAA 451 A V +TSKY I+DHEYDAVVVGAGGAGLRAAMGCAEAGLKTACI+KLFPTRSHTVAAQGGINAA Sbjct: 33 AGVESTALTSKYTIVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACISKLFPTRSHTVAAQGGINAA 99 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1084.775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1084.775.1 >prot_L-elsbetiae_contig1084.775.1 ID=prot_L-elsbetiae_contig1084.775.1|Name=mRNA_L-elsbetiae_contig1084.775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp MLRAGSRFARKLARATKPSREYHATPAARMVVGGGAQNASVNGGDITSKYback to top mRNA from alignment at L-elsbetiae_contig1084:3067..6311- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1084.775.1 ID=mRNA_L-elsbetiae_contig1084.775.1|Name=mRNA_L-elsbetiae_contig1084.775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3245bp|location=Sequence derived from alignment at L-elsbetiae_contig1084:3067..6311- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1084:3067..6311- >mRNA_L-elsbetiae_contig1084.775.1 ID=mRNA_L-elsbetiae_contig1084.775.1|Name=mRNA_L-elsbetiae_contig1084.775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig1084:3067..6311- (Laminarionema elsbetiae ELsaHSoW15)back to top |