mRNA_L-elsbetiae_contig10820.767.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10820.767.1
Unique NamemRNA_L-elsbetiae_contig10820.767.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10820.767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10820contigL-elsbetiae_contig10820:3559..4842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1082
Cds size840
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10820.767.1prot_L-elsbetiae_contig10820.767.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10820 3559..4600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815301.5963426-CDS-L-elsbetiae_contig10820:3558..36421622815301.5963426-CDS-L-elsbetiae_contig10820:3558..3642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10820 3559..3642 -
1691682825.93946-CDS-L-elsbetiae_contig10820:3558..36421691682825.93946-CDS-L-elsbetiae_contig10820:3558..3642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10820 3559..3642 -
1622815301.606307-CDS-L-elsbetiae_contig10820:3844..46001622815301.606307-CDS-L-elsbetiae_contig10820:3844..4600Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10820 3845..4600 -
1691682825.9480436-CDS-L-elsbetiae_contig10820:3844..46001691682825.9480436-CDS-L-elsbetiae_contig10820:3844..4600Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10820 3845..4600 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815301.6185799-UTR-L-elsbetiae_contig10820:4600..48421622815301.6185799-UTR-L-elsbetiae_contig10820:4600..4842Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10820 4601..4842 -
1691682825.9560323-UTR-L-elsbetiae_contig10820:4600..48421691682825.9560323-UTR-L-elsbetiae_contig10820:4600..4842Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10820 4601..4842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10820.767.1

>prot_L-elsbetiae_contig10820.767.1 ID=prot_L-elsbetiae_contig10820.767.1|Name=mRNA_L-elsbetiae_contig10820.767.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=280bp
MSALDMGLPVPTMEEVEAHMQGMAIGHQHVGIDTPDAAEPAEASDDLTAS
LQEMVIGGGEEEIAKVRETWELGCIAQRHQQEQRQTATAKVGLEAAVEAL
VEAGSPQPLSGGGSPEWAKELYSDVGRLQFAFFNALAAQEATQGAAEVVH
TADSYERRDRCGFGLKPDQFLGFFGSFVQGFRDDFRRERTVNARVERDRA
RIRALVAEHGQQRPAAQEAAAARTRSRENARYPPELGKTWGFDPARDAPA
TRSTKGALGLKPSAGPRKKPRNSGRRSGRG
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mRNA from alignment at L-elsbetiae_contig10820:3559..4842-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10820.767.1 ID=mRNA_L-elsbetiae_contig10820.767.1|Name=mRNA_L-elsbetiae_contig10820.767.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1284bp|location=Sequence derived from alignment at L-elsbetiae_contig10820:3559..4842- (Laminarionema elsbetiae ELsaHSoW15)
AGGGAGACGAGGGTGGGGGGTTGGCAGCATCGGCAGAGGTGTTTGGACCC
CTCAGGGACCCTCCCGAGGAGAGCGACAGCGAAGTAGAATACGACTCCGA
CGGCAGTTATGTTGTTCCCGCCAGGCCTGCCTCAAACCAGATGGCTCGGA
TTGACACCACTCCGGCTAGCAACGGCTTCGCTCAACGACAAGCCGAGACC
CGAGCCCATTACTCGGCGTAAGTGGCCGCCGCTGAGCGGGGTATGTCCGC
GTTAGACATGGGCCTGCCCGTGCCAACAATGGAAGAAGTCGAGGCACACA
TGCAAGGGATGGCCATTGGGCACCAGCACGTCGGCATAGACACGCCAGAT
GCGGCTGAACCCGCAGAGGCATCAGATGACCTCACGGCATCGCTGCAAGA
GATGGTCATCGGAGGAGGGGAGGAAGAAATAGCCAAGGTGCGCGAGACGT
GGGAGCTGGGGTGCATCGCGCAGCGCCACCAGCAAGAGCAACGCCAGACG
GCTACGGCAAAGGTTGGTCTGGAGGCCGCGGTGGAGGCACTGGTCGAGGC
CGGGTCCCCGCAACCTCTGTCAGGAGGAGGGTCCCCGGAGTGGGCCAAAG
AGCTGTATTCGGATGTGGGTCGCTTGCAATTTGCGTTTTTCAACGCGCTT
GCAGCGCAAGAGGCGACGCAAGGGGCGGCGGAGGTGGTTCATACCGCCGA
TTCCTACGAGAGGCGGGACAGGTGTGGTTTTGGCCTCAAACCAGACCAAT
TCCTGGGCTTCTTCGGCAGCTTCGTTCAGGGCTTTCGGGACGACTTCAGG
CGAGAACGCACGGTGAACGCCCGCGTAGAGCGTGATCGCGCTAGAATCCG
TGCGCTGGTCGCGGAACACGGTCAGCAGCGGCCCGCTGCGCAGGAGGCAG
CAGCAGCCCGGACTCGAAGCCGTGAGAACGCGCGCTACCCCCCCGAGCTG
GGAAAGACATGGGGCTTCGACCCCGCCCGAGACGCGCCGGCGACCCGCGT
GAGTGGATTGGCGTCATATGTACCGCCCGTGCGCGCTCAGAGAAAGTGCT
ACATACGTTTGGCTTGCTCACACGAGAGTTTCGTTTTGACGGAGGAGGGT
AGAAAGCCTCTTGAAGCTTCTTGCTTATCATGTTCTTATTCAACCGCCCG
CCCCTCTATGCTTGCGCGCATGTGTTTGTTGGTTGTCAACCTCCGAACAG
TCCACAAAGGGGGCTCTTGGCCTAAAACCGTCAGCCGGCCCGCGCAAGAA
GCCCCGTAACTCGGGGAGGAGGAGCGGCAGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10820:3559..4842-

>mRNA_L-elsbetiae_contig10820.767.1 ID=mRNA_L-elsbetiae_contig10820.767.1|Name=mRNA_L-elsbetiae_contig10820.767.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1680bp|location=Sequence derived from alignment at L-elsbetiae_contig10820:3559..4842- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCGCGTTAGACATGGGCCTGCCCGTGCCAACAATGGAAGAAGTCGA
GGCACACATGCAAGGGATGGCCATTGGGCACCAGCACGTCGGCATAGACA
CGCCAGATGCGGCTGAACCCGCAGAGGCATCAGATGACCTCACGGCATCG
CTGCAAGAGATGGTCATCGGAGGAGGGGAGGAAGAAATAGCCAAGGTGCG
CGAGACGTGGGAGCTGGGGTGCATCGCGCAGCGCCACCAGCAAGAGCAAC
GCCAGACGGCTACGGCAAAGGTTGGTCTGGAGGCCGCGGTGGAGGCACTG
GTCGAGGCCGGGTCCCCGCAACCTCTGTCAGGAGGAGGGTCCCCGGAGTG
GGCCAAAGAGCTGTATTCGGATGTGGGTCGCTTGCAATTTGCGTTTTTCA
ACGCGCTTGCAGCGCAAGAGGCGACGCAAGGGGCGGCGGAGGTGGTTCAT
ACCGCCGATTCCTACGAGAGGCGGGACAGGTGTGGTTTTGGCCTCAAACC
AGACCAATTCCTGGGCTTCTTCGGCAGCTTCGTTCAGGGCTTTCGGGACG
ACTTCAGGCGAGAACGCACGGTGAACGCCCGCGTAGAGCGTGATCGCGCT
AGAATCCGTGCGCTGGTCGCGGAACACGGTCAGCAGCGGCCCGCTGCGCA
GGAGGCAGCAGCAGCCCGGACTCGAAGCCGTGAGAACGCGCGCTACCCCC
CCGAGCTGGGAAAGACATGGGGCTTCGACCCCGCCCGAGACGCGCCGGCG
ACCCGCATGTCCGCGTTAGACATGGGCCTGCCCGTGCCAACAATGGAAGA
AGTCGAGGCACACATGCAAGGGATGGCCATTGGGCACCAGCACGTCGGCA
TAGACACGCCAGATGCGGCTGAACCCGCAGAGGCATCAGATGACCTCACG
GCATCGCTGCAAGAGATGGTCATCGGAGGAGGGGAGGAAGAAATAGCCAA
GGTGCGCGAGACGTGGGAGCTGGGGTGCATCGCGCAGCGCCACCAGCAAG
AGCAACGCCAGACGGCTACGGCAAAGGTTGGTCTGGAGGCCGCGGTGGAG
GCACTGGTCGAGGCCGGGTCCCCGCAACCTCTGTCAGGAGGAGGGTCCCC
GGAGTGGGCCAAAGAGCTGTATTCGGATGTGGGTCGCTTGCAATTTGCGT
TTTTCAACGCGCTTGCAGCGCAAGAGGCGACGCAAGGGGCGGCGGAGGTG
GTTCATACCGCCGATTCCTACGAGAGGCGGGACAGGTGTGGTTTTGGCCT
CAAACCAGACCAATTCCTGGGCTTCTTCGGCAGCTTCGTTCAGGGCTTTC
GGGACGACTTCAGGCGAGAACGCACGGTGAACGCCCGCGTAGAGCGTGAT
CGCGCTAGAATCCGTGCGCTGGTCGCGGAACACGGTCAGCAGCGGCCCGC
TGCGCAGGAGGCAGCAGCAGCCCGGACTCGAAGCCGTGAGAACGCGCGCT
ACCCCCCCGAGCTGGGAAAGACATGGGGCTTCGACCCCGCCCGAGACGCG
CCGGCGACCCGCTCCACAAAGGGGGCTCTTGGCCTAAAACCGTCAGCCGG
CCCGCGCAAGAAGCCCCGTAACTCGGGGAGGAGGAGCGGCAGGGGGTCCA
CAAAGGGGGCTCTTGGCCTAAAACCGTCAGCCGGCCCGCGCAAGAAGCCC
CGTAACTCGGGGAGGAGGAGCGGCAGGGGG
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