mRNA_L-elsbetiae_contig10816.761.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10816.761.1
Unique NamemRNA_L-elsbetiae_contig10816.761.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10816.761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10816contigL-elsbetiae_contig10816:2955..4835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815301.0523758-CDS-L-elsbetiae_contig10816:2954..31781622815301.0523758-CDS-L-elsbetiae_contig10816:2954..3178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10816 2955..3178 -
1691682825.6685524-CDS-L-elsbetiae_contig10816:2954..31781691682825.6685524-CDS-L-elsbetiae_contig10816:2954..3178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10816 2955..3178 -
1622815301.0665662-CDS-L-elsbetiae_contig10816:4741..48351622815301.0665662-CDS-L-elsbetiae_contig10816:4741..4835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10816 4742..4835 -
1691682825.67863-CDS-L-elsbetiae_contig10816:4741..48351691682825.67863-CDS-L-elsbetiae_contig10816:4741..4835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10816 4742..4835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10816.761.1prot_L-elsbetiae_contig10816.761.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10816 2955..4835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10816.761.1

>prot_L-elsbetiae_contig10816.761.1 ID=prot_L-elsbetiae_contig10816.761.1|Name=mRNA_L-elsbetiae_contig10816.761.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
GSACLGEVRGSSVLCVRNHISHTRPSGTPSSGANTIFQHIGWTRLEGRRQ
PKPSQSRGCSSVCRAAALQRRQHQHQHDHQHDHQHDHQHPLRRQQEEVGG
MLSAGS
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mRNA from alignment at L-elsbetiae_contig10816:2955..4835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10816.761.1 ID=mRNA_L-elsbetiae_contig10816.761.1|Name=mRNA_L-elsbetiae_contig10816.761.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1881bp|location=Sequence derived from alignment at L-elsbetiae_contig10816:2955..4835- (Laminarionema elsbetiae ELsaHSoW15)
GGCAGCGCTTGCCTCGGGGAGGTCCGCGGGTCCTCTGTCCTCTGCGTGCG
AAACCACATATCACATACGCGTCCGAGCGGGACCCCAAGTTCAGGTATGT
ATTATTTTACATCTTGCACTCTTTACCCAGTGTTTGCAGGCGACCTCGGC
ACCTGCCTGCTATTTTATCGTGCATCGTGTCATCGTGTCCATCGTATTGG
TTTCCCGCCGTTCAGCTTTCAGCTCCTGGTCTCATCTCGACACATACCAC
ATACCGCTGAGTTGGGGCATATCTCCGCTGCTGAGAGACCGACTGTACCC
ATGAGAGAGACAGCAGCTACACCCTGAAAGCGGCGAATACAAACTTTGCA
TCTTCGCTCTCTGCGTTGAAGAGCGGCATTATTTAGCAACACCTGGCACC
CAGCGAAGTTGCTGCTGTTGCAAAAGTTCTTGCAACCGGCCCCAGGGCCC
AGTGCCTCCCTCCCCTGCGTTGCGTCCTGTTGTTCCTGGCATCAACAGCG
AGGTGTGTGCGAAGGTTTCGTGGTGGTGTTTCGCGCGTACTGTTTGTACT
GCTGCGTGTGGTCCCCAATACCTTCACACGTGATACGCCTGACGAGAGCA
GAGATGTGCTGAGCTCAACACCTACGTATGTACAATATCTAGAGGCGATT
GGTGATCTTTTTGAGATGCCTTTTCGGTGCGCTTTTGGTGCGAGTCGAAT
TCTGCCGAATACTGCGCACTTTCACTCGTCGCCACTCTCTCACATACATT
AGATATACACATGCGTCAAGTTTTAAGTGTCTAAGGGCCGGTTGAGGTTG
ACAGCGTGCAGGAATATTCATCGGAGTGCGAGCTGACGTTGACGAAAGAG
ATCGAAGGAGTAGAGTGTGAGCTGTCGGTTCAAAAGACGTGGCAAAGTTG
CCTAGCTCTGTGGGCGGCCGGCAGAGACAGAACCGCACCAATTTATACCG
CGGCCCTTCGCGCATTGTTCGTTTAAAAAGAAACTACGCTGTGTATCTAC
ATACAAACATAGATATGTAGATGTATGTATGTAAACTATGTACTCTGTTG
GGAGAATCTATGTACGTATCTATCTACATCTGGTGACTGGCAAACTCAAG
TACAGACAGACTTGTTGTTTGTCTTCGCATTAATTACCGTTCCGAATATT
GTGCGACAAATCGTTTGCTCCTGGTCCTCACCTGTTCGCGAATTAATTCA
ACCAACCTCTTTTTTGCTCACGGGGTACCAATGTAGAGAGTGCTGTGCTC
CAGCAGGGTGCTCGCTCGTTGTATTGCATCCTGTTCTCTCTCTTTGCAGT
GCGTGAAATTATCTGCAACCATTGCCATTGTTTCCCAGTATCAAACCAAT
AATAAACGCTATAACAGTAGTGAGTGTTCCAAGTTTGTCGACGGAACCGT
TTCTCTAGATGCCTCCACTAGTATATCTCCGTGGCCTACGTTGCACAGCT
GTCAAAAGAGTCGTAGGCAAACTTAGATCTGGTTCCCTCTGTCTGTACCT
CTGTCAGGCACGTACATGCGACCGTCGTGGTCACTTCCCCAGAGCACAGA
TTTCGCCAAAAGGAAATTTGGTGGCAATCTGGCCCTTGGAACGAGAGCAC
TTAAAAGTCCTATTTTTTGTCGCTTGCTCCACCACCCCCTCGTTGTCTTC
CCTTCAGGTGCAAACACGATATTCCAACACATCGGGTGGACGCGTTTAGA
AGGCCGCCGGCAGCCAAAGCCCAGCCAAAGCCGTGGGTGCTCCTCTGTGT
GCCGCGCCGCTGCGCTGCAGCGGCGGCAGCACCAGCACCAGCACGACCAC
CAGCACGACCACCAGCACGACCACCAGCACCCCCTGCGTCGGCAGCAGGA
AGAGGTGGGCGGCATGCTCTCTGCCGGGTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10816:2955..4835-

>mRNA_L-elsbetiae_contig10816.761.1 ID=mRNA_L-elsbetiae_contig10816.761.1|Name=mRNA_L-elsbetiae_contig10816.761.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig10816:2955..4835- (Laminarionema elsbetiae ELsaHSoW15)
GGCAGCGCTTGCCTCGGGGAGGTCCGCGGGTCCTCTGTCCTCTGCGTGCG
AAACCACATATCACATACGCGTCCGAGCGGGACCCCAAGTTCAGGGCAGC
GCTTGCCTCGGGGAGGTCCGCGGGTCCTCTGTCCTCTGCGTGCGAAACCA
CATATCACATACGCGTCCGAGCGGGACCCCAAGTTCAGGTGCAAACACGA
TATTCCAACACATCGGGTGGACGCGTTTAGAAGGCCGCCGGCAGCCAAAG
CCCAGCCAAAGCCGTGGGTGCTCCTCTGTGTGCCGCGCCGCTGCGCTGCA
GCGGCGGCAGCACCAGCACCAGCACGACCACCAGCACGACCACCAGCACG
ACCACCAGCACCCCCTGCGTCGGCAGCAGGAAGAGGTGGGCGGCATGCTC
TCTGCCGGGTCAGTGCAAACACGATATTCCAACACATCGGGTGGACGCGT
TTAGAAGGCCGCCGGCAGCCAAAGCCCAGCCAAAGCCGTGGGTGCTCCTC
TGTGTGCCGCGCCGCTGCGCTGCAGCGGCGGCAGCACCAGCACCAGCACG
ACCACCAGCACGACCACCAGCACGACCACCAGCACCCCCTGCGTCGGCAG
CAGGAAGAGGTGGGCGGCATGCTCTCTGCCGGGTCA
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