mRNA_L-elsbetiae_contig10806.754.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10806.754.1
Unique NamemRNA_L-elsbetiae_contig10806.754.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10806.754.1 vs. uniprot
Match: D7FP31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP31_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 6.990e-14
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:   52 KKAKDPAKGMLRLPTPTTLRKEAHADENAIANTDFRAARKFGKEGVKLVYGIVDAD 219
            KK KDPAK +LRLPTP TLRK A+AD+  IANTD + A+KFGK+ VK V+ +VD D
Sbjct:  141 KKGKDPAKSVLRLPTPGTLRKAANADDETIANTDPKGAKKFGKDHVKNVHKLVDDD 196
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10806.754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP31_ECTSI6.990e-1464.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10806contigL-elsbetiae_contig10806:4514..5530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPseudogene
Ec32 orthologEc-10_002290.1
Exons3
Model size299
Cds size297
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10806.754.1prot_L-elsbetiae_contig10806.754.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10806 4514..5530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815300.4527833-CDS-L-elsbetiae_contig10806:4513..45401622815300.4527833-CDS-L-elsbetiae_contig10806:4513..4540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10806 4514..4540 -
1691682825.3204434-CDS-L-elsbetiae_contig10806:4513..45401691682825.3204434-CDS-L-elsbetiae_contig10806:4513..4540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10806 4514..4540 -
1622815300.467701-CDS-L-elsbetiae_contig10806:5056..51311622815300.467701-CDS-L-elsbetiae_contig10806:5056..5131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10806 5057..5131 -
1691682825.3294218-CDS-L-elsbetiae_contig10806:5056..51311691682825.3294218-CDS-L-elsbetiae_contig10806:5056..5131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10806 5057..5131 -
1622815300.4830978-CDS-L-elsbetiae_contig10806:5335..55301622815300.4830978-CDS-L-elsbetiae_contig10806:5335..5530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10806 5336..5530 -
1691682825.3408144-CDS-L-elsbetiae_contig10806:5335..55301691682825.3408144-CDS-L-elsbetiae_contig10806:5335..5530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10806 5336..5530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10806.754.1

>prot_L-elsbetiae_contig10806.754.1 ID=prot_L-elsbetiae_contig10806.754.1|Name=mRNA_L-elsbetiae_contig10806.754.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
GGGGSSAAAAAAAKPKPKKAKDPAKGMLRLPTPTTLRKEAHADENAIANT
DFRAARKFGKEGVKLVYGIVDADWHDGYEDQSNAVFDYWDAFRRFLQGV
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mRNA from alignment at L-elsbetiae_contig10806:4514..5530-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10806.754.1 ID=mRNA_L-elsbetiae_contig10806.754.1|Name=mRNA_L-elsbetiae_contig10806.754.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1017bp|location=Sequence derived from alignment at L-elsbetiae_contig10806:4514..5530- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGGCGGCAGCAGCGCGGCGGCGGCGGCCGCGGCGAAGCCGAAGCC
GAAGAAGGCCAAGGACCCTGCCAAGGGCATGCTGCGGCTACCGACGCCGA
CTACGCTGCGCAAGGAGGCCCACGCCGACGAGAACGCTATCGCCAACACC
GACTTCAGGGCCGCCAGGAAGTTTGGCAAGGAGGGGGTCAAGCTCGTGAG
TGTGTGTCTGCGCGCGTAGCGGCACCTAACGCTACATAACACTACATATC
GGCACGCCTCGACCGCCTGCCCGCCCACAAAACCGGGCGTGACTGAGCCT
CTGGTGTTTTTTTTTCTTGGTCCGCATTCCAGTACGGTGATACATATCGG
TCCGGTCCTCGTTGTTTCGTTGTTTCGGTCATGGGGCGCAATCTCACAGG
TGTACGGAATAGTCGACGCTGATTGGCACGATGGGTACGAGGATCAGTCG
AACGCCGTGTTCGACTACTGGGATGTAAGTGGCGTGGAGAGAAGAATTGC
GCTTTGTGTGTGTGCTGCGTTTGTTTTGCACAACGAGCGAATTGACTTGG
GGGGCACACATTGGTTGCCCAGCAGCCGACAGACCTTTTCCCAAGCACCA
GATGTTTTGCGCCGAAAGGAAGAAGAGACTACATATTTTCGAGAACCGAC
TTGAGAGCAGGGCTGTTTAGTTTAAAACCGGATGAAAATGGACCGGAGCC
AGTTTTCCTTGTTCTTTTGGACTTGACGATCAATGTATGTATCTATGGTC
TTTAATTGTTTTCGATTTGTTCTTTTTTGCGGCCATCGTTACTGACGAAA
GCACGATACGCCGGCCGAGCAGCGGTTAAAGCTCCTAGCCACGAAGAACA
TGCGCTTGACAAACCTCGTACTACGTGCATGACCATGAACAGCTCTCGCG
CCCAAATGCCCGTCACTCTAGTACACAGCAAAAACATGCTAAGTATTGTA
TTGACACACCCATATATCCCGGTTGCCTTTATACGTGCAGGCGTTCCGAA
GGTTCTTGCAGGGCGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10806:4514..5530-

>mRNA_L-elsbetiae_contig10806.754.1 ID=mRNA_L-elsbetiae_contig10806.754.1|Name=mRNA_L-elsbetiae_contig10806.754.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig10806:4514..5530- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGGCGGCAGCAGCGCGGCGGCGGCGGCCGCGGCGAAGCCGAAGCC
GAAGAAGGCCAAGGACCCTGCCAAGGGCATGCTGCGGCTACCGACGCCGA
CTACGCTGCGCAAGGAGGCCCACGCCGACGAGAACGCTATCGCCAACACC
GACTTCAGGGCCGCCAGGAAGTTTGGCAAGGAGGGGGTCAAGCTCGGCGG
CGGCGGCAGCAGCGCGGCGGCGGCGGCCGCGGCGAAGCCGAAGCCGAAGA
AGGCCAAGGACCCTGCCAAGGGCATGCTGCGGCTACCGACGCCGACTACG
CTGCGCAAGGAGGCCCACGCCGACGAGAACGCTATCGCCAACACCGACTT
CAGGGCCGCCAGGAAGTTTGGCAAGGAGGGGGTCAAGCTCGTGTACGGAA
TAGTCGACGCTGATTGGCACGATGGGTACGAGGATCAGTCGAACGCCGTG
TTCGACTACTGGGATGTGTACGGAATAGTCGACGCTGATTGGCACGATGG
GTACGAGGATCAGTCGAACGCCGTGTTCGACTACTGGGATGCGTTCCGAA
GGTTCTTGCAGGGCGTGGCGTTCCGAAGGTTCTTGCAGGGCGTG
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