mRNA_L-elsbetiae_contig108.746.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
|
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig108.746.1 vs. uniprot
Match: D8LB54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB54_ECTSI) HSP 1 Score: 417 bits (1071), Expect = 6.060e-127 Identity = 286/563 (50.80%), Postives = 334/563 (59.33%), Query Frame = 1
Query: 1 QDTFYVDPRVEGCDGLLSRAKRLGLQLKGFLGEGVTVCIAASSPGGAGGRXXXXXXXXXXXXXXXXXGLSRGQRLSRIHRMVVQAQTEPTAGSALGGRRQGPTSIADQARRLRATVLSGKAFGLWLERQESKSAAARGWGG----AAGPRAAAGGKREAVAAARPLISRG----QRAA-MSRFKSQEHPRVVMKDLDGLEPDRVQAFPPELLRKCNLHTDAPPGMCPFIPREQWDREVLKMRKKGALCGAAKVAARMPPAGAQKPRRGGWCECCERQYIGTMSKHCAGDQHRAAVAADPSYAVLLELESWTGSDGESAAXXXXXXXXXXXXXXXXXXXRGGDVTSTGETGVASAANE-RDEGRDRSPAR---AGKGETFFRGRDDAKKPEAPTGRESPSRRRRGVVSSPTRCDATSGGVVDAKREASTTKGGSALRD--TVSPSGLRDALGARTGE-------RVLRNSPRRYPKPGHQATLAPCSGG----GAC--APPKAPPSVEPPRPGSL--HGRKSSPAAASADTPATSVVSNPSSQTDCSERSRSSSEKAWCPSESP 1599
QDTFYVDPRVEGCD L SRA+RLG + +GFLGEGVT+C+AAS+ AG G SRGQRLSRIHRMV QAQTE +A +Q TSI DQAR+LRA V++G+ F LWL RQESK A +G GG AAG A GK+ AA RPLISR QRAA SRFKS+EHPRVV+KDLDGLEPDRVQAFPPELLRKC L TDAPPG+CPF PREQWDREVLK++KK A C AKVAARMPPAG+QKPRRGGWCECCE QYIGTMS+HCA D+H AAV ADP++A LL ESWTG++G+S+ G D T+ A E +EG P AG G + + P A PS RR+G S +R + +REA T K ++ + +SPSGLR+A G R R SPR PK + +A CS G C APP+ PP S H R SP A DTPATSV S PSS DC + SSS+ + CP+ESP
Sbjct: 9 QDTFYVDPRVEGCDSLSSRAQRLGFKTRGFLGEGVTICVAASTTPSAG--DGGASEGAATPGAAGGVGQSRGQRLSRIHRMVTQAQTESSARPG----QQAHTSIVDQARQLRAAVVTGQTFRLWLGRQESKRGAGKGEGGRVTVAAGAAVAGEGKK---AADRPLISRRGGGQQRAAGASRFKSREHPRVVIKDLDGLEPDRVQAFPPELLRKCFLLTDAPPGICPFTPREQWDREVLKVKKKDAQCVGAKVAARMPPAGSQKPRRGGWCECCEIQYIGTMSEHCASDRHTAAVEADPNFAALLAFESWTGAEGDSSVVSDTAPGRTAAYPTPKAEVAGRDSTAVSPALPGPATKEGHEEGGGEEPLLPPVAGSEAPQGCGEHNDQNPIALGTGSPPSGRRQGSAVSSSR---------EGEREAPTAKKEDSVLEGGAISPSGLREATGGXXXXXXXXXCARASRGSPRLRPKLEQPSGVALCSSEPGAPGECRQAPPRFMRGTCPPNGDSRKDHRRPGSPVA---DTPATSVASVPSSLADCRSKQDSSSKSSVCPAESP 550
BLAST of mRNA_L-elsbetiae_contig108.746.1 vs. uniprot
Match: A0A6H5K9H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H1_9PHAE) HSP 1 Score: 390 bits (1003), Expect = 1.810e-116 Identity = 412/1073 (38.40%), Postives = 504/1073 (46.97%), Query Frame = 1
Query: 4 DTFYVDPRVEGCDGLLSRAKRLGLQLKGFLGEGVTVCIAASSPGGAGGRXXXXXXXXXXXXXXXXXGLSRGQRLSRIHRMVVQAQTEPTAGSALGGRRQGPTSIADQARRLRATVLSGKAFGLWLERQESKSAAARGWGG----AAGPRAAAGGKREAVAAARPLISRG----QRAA-MSRFKSQEHPRVVMKDLDGLEPDRVQAFPPELLRKCNLHTDAPPGMCPFIPREQ-------------------------WDREVLKMRKKGALCGAAKVAARMPPAGAQKPRRGGWCECCERQYIGTMSKHCAGDQHRAAVAADPSYAVLLELESWTGSDGESAAXXXXXXXXXXXXXXXXXXXRGGDVTSTGET------GVASAANERDEGRDRSPAR---AGKGETFFRGRDDAKKPEAPTGRESPSRRRRGVVSSPTRCDATSGGVVDAKREASTTKGGSALRD--TVSPSGLRDALGA--RTGERVLRNSPRRYPKPGHQATLAPCSGG----GACAPPKAPPSVE----PPRPGSLHGRKSSPAAASADTPATSVVSNPSSQTDCSERSRSSSEKAWCPSESPACTRARGRAFSPSSSRRFSPRRVGIPGRSC----------KEDTAVGPRSGTASPAAGAEAVQRYSRASHGASIEACRSPTVSGGFGSSPSGQRRRADSVGTAAQKQQPTRSVPRDAGEKPEHVSAPSPLSDDQKRDETARTEKRRKRELRLLEDSPEFRLGGPSPAGSTSRVRTCDARGRNVTTSESGGRRCSRDHHPHGDGPATKLGGGKVRRTDDRSATSDGSGNEEWRVKRKRKTRHKDEGGG---SPPTD--NGSSRESGACSHACRYPAKSADTMGLV--GGTTEEDTERAGDGSGSSAAVV-------------------PRE-----EEGPKRAGLPVG--------------SRGDTDTRSTRSRGGT----RSRSKRRTP---STAGRMGLETTGDSSDDGGGSCAEDAGQQSSPLSPEWNERNRDVPRSLGSRFAEDC--DGRTARAARGKHAAVGANSDSEPP-AKRARAPLSR 2862
+TFYVDPRVEGC L SRA+RLG + +GFLGEGVTVC+AAS+ AG RG+RLSRIHRM AQTE +A RQ TSI DQAR+LRATV++G+AF LWL RQESK A RG GG AAG A GK A RPL+SRG QRAA SRFKS+EHPRVV+KDLDGLEPDRVQAFPPELLRKC LHTDAPPG+CPF PREQ WDREVLKM+KK A C AKVAARMPPAG+QKPRRGGWCECCE QYIGTMS+HCA D+H AAV ADP +A LL ESWTG++G+S+ G D T+ G A+ +EG P AG G D+ + P A P RR+G S +R + +REA ++ + +SPSGLR+A G R R SPR PKP + +A S G C P APP V+ PP S + P + +ADTPATS S PSS TDC SSS+ + P+ESP +G P S SP + ++V + ++ P A R R G + P G + S P G+++R S PR+ G P +P+ ++ ++ R KR L LLE S + AG RT R++TT+ SGGR C + TK ++S GS + + K K+ +D GG SP T NG SRE+ C D G+ G+ E A DG G SA P E E PKRA LP S T ++ GGT R+RS R P STA RMGLET AGQ SSP+S +E R + R LGS+FAE+ A AR AVGA S EPP +KRA+A +R
Sbjct: 4 ETFYVDPRVEGCGSLSSRAQRLGFKTRGFLGEGVTVCVAASTNPAAGDGGASEDAATATAGAVGGARQLRGRRLSRIHRM---AQTEFSAQPG----RQTHTSIVDQARQLRATVVTGQAFRLWLGRQESKRGAGRGEGGRVPAAAGAAVAVEGKETAD---RPLMSRGGGGQQRAAGASRFKSREHPRVVIKDLDGLEPDRVQAFPPELLRKCFLHTDAPPGICPFTPREQASVRRRGAQLGSNSSNGVFVLLEEEWDREVLKMKKKDAQCVGAKVAARMPPAGSQKPRRGGWCECCEIQYIGTMSEHCASDRHTAAVEADPHFAALLAFESWTGAEGDSSVVRDTAPGRTAAYPTPKAEMAGRDSTAVSPALSPALPGPATKGEGHEEGGGEEPLLPPVAGSEVLQGCGEDNDQNPVALGTGSPPIGRRQGSAVSSSR---------EGEREAPAATNEDSILEGGAISPSGLREATGGGXXXSARASRGSPRLRPKPDQPSGVALRSSEPGAPGECRP--APPRVKRGTCPPDWDSRKDHRK-PGSPTADTPATSAASVPSSLTDCRSNQDSSSKSSVFPAESPVYD-VQGPDMLPPLSASSSPTXXXXXXXXXXXXXXXXXXXENSSSVVGGASSSPPDAARRMDLRVGRGGTGGA------PEAPGTWPSPPKGEQQRLTRP-----------SPPREIGTSP----SPASVTTSKQEQIDERXXXXXKRALALLEASAGWAASVREAAGPCPGDRTP----RSLTTT-SGGRPCRK---------VTKAS----------PSSSRGSTAAQSQRVSKEKSPREDVGGXXXXSPSTSRTNGPSRENEEGEQPC-----GTDRSGVTVEAGSNAE----ARDGCGGSAXXXXXXXXXXXXXXXXXQCPPSPAEDAHGRERMPKRARLPPDNGHTYGEEFENIPPSSDRTPPSGEKNSGGTSSSGRNRSSARQPQASSTASRMGLETAA-------------AGQHSSPVS---SEGTRSISRRLGSKFAENQTRSSNAASRARTNRVAVGATSKIEPPTSKRAQANATR 983 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig108.746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig108.746.1 >prot_L-elsbetiae_contig108.746.1 ID=prot_L-elsbetiae_contig108.746.1|Name=mRNA_L-elsbetiae_contig108.746.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=962bp QDTFYVDPRVEGCDGLLSRAKRLGLQLKGFLGEGVTVCIAASSPGGAGGRback to top mRNA from alignment at L-elsbetiae_contig108:23506..28408- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig108.746.1 ID=mRNA_L-elsbetiae_contig108.746.1|Name=mRNA_L-elsbetiae_contig108.746.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4903bp|location=Sequence derived from alignment at L-elsbetiae_contig108:23506..28408- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig108:23506..28408- >mRNA_L-elsbetiae_contig108.746.1 ID=mRNA_L-elsbetiae_contig108.746.1|Name=mRNA_L-elsbetiae_contig108.746.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5772bp|location=Sequence derived from alignment at L-elsbetiae_contig108:23506..28408- (Laminarionema elsbetiae ELsaHSoW15)back to top |