mRNA_L-elsbetiae_contig10794.738.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10794.738.1
Unique NamemRNA_L-elsbetiae_contig10794.738.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10794.738.1 vs. uniprot
Match: D8LT04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT04_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.150e-46
Identity = 87/142 (61.27%), Postives = 108/142 (76.06%), Query Frame = 3 
Query:   30 MLQVLRPRLSARGHAVLCHSKRVGSGCARR-GRRRLSTTSEPSKPAGSPSADEEPGWPLKYKLAGGAALGTIIPWMFSYAVANDPGSRRLIERLSPEL-----------VQWFRNREQGGHFFDEDPKRVAYVAQAPEWIDQ 419
            ML+VL+PRL   G A L   K V  GC R+ G RRLSTT+EP+KP+ SP+A EEPGWPLKYK+AGGA LGTIIP++FSYA+ANDPGSRRL+ +LSP +           VQWFR R++GGHFFDEDPKR+ Y+A  P+WI++
Sbjct:    1 MLRVLQPRLPTHGRAPLRRPK-VIEGCIRQHGHRRLSTTAEPAKPS-SPAA-EEPGWPLKYKVAGGAILGTIIPYIFSYAMANDPGSRRLVSKLSPGIATTLPGGGRLGVQWFRQRQKGGHFFDEDPKRLEYLAHVPDWINE 139
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10794.738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT04_ECTSI1.150e-4661.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10794contigL-elsbetiae_contig10794:201..1860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_004340.1
Exons3
Model size420
Cds size390
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10794.738.1prot_L-elsbetiae_contig10794.738.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10794 201..1831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815298.4205294-CDS-L-elsbetiae_contig10794:200..2981622815298.4205294-CDS-L-elsbetiae_contig10794:200..298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10794 201..298 -
1691682824.0109432-CDS-L-elsbetiae_contig10794:200..2981691682824.0109432-CDS-L-elsbetiae_contig10794:200..298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10794 201..298 -
1622815298.430079-CDS-L-elsbetiae_contig10794:619..7341622815298.430079-CDS-L-elsbetiae_contig10794:619..734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10794 620..734 -
1691682824.030466-CDS-L-elsbetiae_contig10794:619..7341691682824.030466-CDS-L-elsbetiae_contig10794:619..734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10794 620..734 -
1622815298.4434683-CDS-L-elsbetiae_contig10794:1654..18311622815298.4434683-CDS-L-elsbetiae_contig10794:1654..1831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10794 1655..1831 -
1691682824.0401282-CDS-L-elsbetiae_contig10794:1654..18311691682824.0401282-CDS-L-elsbetiae_contig10794:1654..1831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10794 1655..1831 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815298.4571955-UTR-L-elsbetiae_contig10794:1831..18601622815298.4571955-UTR-L-elsbetiae_contig10794:1831..1860Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10794 1832..1860 -
1691682824.0486135-UTR-L-elsbetiae_contig10794:1831..18601691682824.0486135-UTR-L-elsbetiae_contig10794:1831..1860Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10794 1832..1860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10794.738.1

>prot_L-elsbetiae_contig10794.738.1 ID=prot_L-elsbetiae_contig10794.738.1|Name=mRNA_L-elsbetiae_contig10794.738.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
MLQVLRPRLSARGHAVLCHSKRVGSGCARRGRRRLSTTSEPSKPAGSPSA
DEEPGWPLKYKLAGGAALGTIIPWMFSYAVANDPGSRRLIERLSPELVQW
FRNREQGGHFFDEDPKRVAYVAQAPEWIDQ
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mRNA from alignment at L-elsbetiae_contig10794:201..1860-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10794.738.1 ID=mRNA_L-elsbetiae_contig10794.738.1|Name=mRNA_L-elsbetiae_contig10794.738.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1660bp|location=Sequence derived from alignment at L-elsbetiae_contig10794:201..1860- (Laminarionema elsbetiae ELsaHSoW15)
GGGAACTCTGTGGGCACGCCGGCAGCAACATGTTGCAAGTGCTGAGGCCT
CGGCTGAGTGCCCGTGGTCATGCAGTTCTGTGCCATTCCAAACGAGTTGG
TTCGGGTTGCGCAAGGAGGGGACGTCGGCGCCTTTCCACGACTTCAGAGC
CCTCGAAACCCGCTGGTTCTCCCAGTGCCGACGAGGAACCCGGCTGGCCG
CTCAAGGTTTGTGCCACATATACACAGGGTACCGGAGAGCAGCACGGCGA
ACAGATTGGGATATTATTGAAGAAATGGTAAAGCTCCACTTTCATTCCAG
CTGCATACGTTGCGTGGAGATTTGGGACGATACAACTGCGACGTACTCAG
CGTGTAGGTACAACAACACCAACCGACTTCTGCTGGAGAGCCCGGTAGCG
ACTTGATTGTATGTGCCCTCTTCAAGGTTCTCCCAAAGAGACTAAGGGGC
AACAGCAGTAGAACATAGTCTGGTCTCCGCGGTACATATACACCTCTTGC
TGTGCACTACATACAGGCTGCATCTTGTCTTTCAGGAAATGGCACGACGG
CTGCCAACGGCAGAGGCTTTTGTAGAGGAGCGATGATGTCCCCGTCTGCC
TGTAGAACACCAAGCTCCGGCCGGACTTTCGTATGGACATATGCATAAAA
CCAGTATGCATATGTATGTCTAACTCCAAGGATCTATGATCTGCAGTACG
ACTTCGTACACGGCCATTGCATGACCTTCATATACCATGGGACCATCCCC
AGCAGCAATCCCACGCCTCGCGTCCTTGTTCCATCACATAGCGTGCTCTT
GTACTCTGTATACTCCGAGTATACTTCTACATAGTCTACATAGTGTGGCG
ATGGTGCGTTTGGTCGGTGGTCGAATAGGTAACCCAAAGGCACATCAACA
CCTGATTCACGCCCCTCTCCCCTCCGATCTCGAGGCTTGTGCAATGCAAA
CACATGTATCTATGAGTTTGGTGATGTTTTCCACCCGTCGTGTGGCACGT
GATACGTATTCCTTCCATCAACCTACATAAATAACCCCCCGAGATAACCC
AACGCCCGCACCCCGACGACGCTGCCTGCATCCCATTCCATTTCCTCACG
CGAATGAAAAAACAATATAAAAACAGTACAAATTAGCGGGAGGCGCGGCG
CTGGGCACGATCATCCCGTGGATGTTTTCCTACGCGGTCGCCAACGACCC
GGGCTCGAGGAGACTCATCGAGAGACTGTCGCCGGAGCTGGGTGAGTTGT
CGTCACCGCTGCCGCCCCGTTCCCCTGTGCTGCTATTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGGTTTTTGTGGTGGGCGTACCTTGCTG
GCTGGCTGCGGATTGGGTATCCCCCGCGCTAGCGTTGTTGTTACCCCCCC
CCCCGTGTGTGGGCCTGCCTGTCTTCATTCATACACCGCTACTTCCCTGC
GACATGTAAGTCACTGGACTAGATAGAGCGATCGCGATGATACCGTGCCG
CTGCTGCTCTACCTGCCTGCCTCCCTGCCTGTGCGGTTGTCGCGTTGTTT
GCCGGGAAACAGTGCAGTGGTTCAGGAATAGAGAACAGGGGGGGCACTTC
TTCGACGAGGACCCCAAGCGCGTGGCGTACGTGGCGCAGGCGCCGGAATG
GATCGACCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10794:201..1860-

>mRNA_L-elsbetiae_contig10794.738.1 ID=mRNA_L-elsbetiae_contig10794.738.1|Name=mRNA_L-elsbetiae_contig10794.738.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig10794:201..1860- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCAAGTGCTGAGGCCTCGGCTGAGTGCCCGTGGTCATGCAGTTCT
GTGCCATTCCAAACGAGTTGGTTCGGGTTGCGCAAGGAGGGGACGTCGGC
GCCTTTCCACGACTTCAGAGCCCTCGAAACCCGCTGGTTCTCCCAGTGCC
GACGAGGAACCCGGCTGGCCGCTCAAGATGTTGCAAGTGCTGAGGCCTCG
GCTGAGTGCCCGTGGTCATGCAGTTCTGTGCCATTCCAAACGAGTTGGTT
CGGGTTGCGCAAGGAGGGGACGTCGGCGCCTTTCCACGACTTCAGAGCCC
TCGAAACCCGCTGGTTCTCCCAGTGCCGACGAGGAACCCGGCTGGCCGCT
CAAGTACAAATTAGCGGGAGGCGCGGCGCTGGGCACGATCATCCCGTGGA
TGTTTTCCTACGCGGTCGCCAACGACCCGGGCTCGAGGAGACTCATCGAG
AGACTGTCGCCGGAGCTGGTACAAATTAGCGGGAGGCGCGGCGCTGGGCA
CGATCATCCCGTGGATGTTTTCCTACGCGGTCGCCAACGACCCGGGCTCG
AGGAGACTCATCGAGAGACTGTCGCCGGAGCTGGTGCAGTGGTTCAGGAA
TAGAGAACAGGGGGGGCACTTCTTCGACGAGGACCCCAAGCGCGTGGCGT
ACGTGGCGCAGGCGCCGGAATGGATCGACCAGTGCAGTGGTTCAGGAATA
GAGAACAGGGGGGGCACTTCTTCGACGAGGACCCCAAGCGCGTGGCGTAC
GTGGCGCAGGCGCCGGAATGGATCGACCAG
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