mRNA_L-elsbetiae_contig1079.736.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1079.736.1
Unique NamemRNA_L-elsbetiae_contig1079.736.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1079.736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1079contigL-elsbetiae_contig1079:28003..28909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size907
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1079.736.1prot_L-elsbetiae_contig1079.736.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1079 28056..28529 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815297.688197-UTR-L-elsbetiae_contig1079:28002..280551622815297.688197-UTR-L-elsbetiae_contig1079:28002..28055Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1079 28003..28055 +
1691682823.508008-UTR-L-elsbetiae_contig1079:28002..280551691682823.508008-UTR-L-elsbetiae_contig1079:28002..28055Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1079 28003..28055 +
1622815297.7092745-UTR-L-elsbetiae_contig1079:28529..289091622815297.7092745-UTR-L-elsbetiae_contig1079:28529..28909Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1079 28530..28909 +
1691682823.5288024-UTR-L-elsbetiae_contig1079:28529..289091691682823.5288024-UTR-L-elsbetiae_contig1079:28529..28909Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1079 28530..28909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815297.6988592-CDS-L-elsbetiae_contig1079:28055..285291622815297.6988592-CDS-L-elsbetiae_contig1079:28055..28529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1079 28056..28529 +
1691682823.5195704-CDS-L-elsbetiae_contig1079:28055..285291691682823.5195704-CDS-L-elsbetiae_contig1079:28055..28529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1079 28056..28529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1079.736.1

>prot_L-elsbetiae_contig1079.736.1 ID=prot_L-elsbetiae_contig1079.736.1|Name=mRNA_L-elsbetiae_contig1079.736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MRRLNILGQSENCLVWLRLLSPVGLKQSQPYGTKERTTLHESGTKKAESV
TNRPTSQLKDAPSTRKRQFSDFSRGAGGGGGGGGGGERRKPANEQAQEKK
TREGKRGSVATTLFSTLTLTDSQNPVFPRGLEKNQTAASSFNSTVSQENK
KTGVCVL*
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mRNA from alignment at L-elsbetiae_contig1079:28003..28909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1079.736.1 ID=mRNA_L-elsbetiae_contig1079.736.1|Name=mRNA_L-elsbetiae_contig1079.736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=907bp|location=Sequence derived from alignment at L-elsbetiae_contig1079:28003..28909+ (Laminarionema elsbetiae ELsaHSoW15)
TGCAAGGACTCGCCGGGGGCTTTTGCCCCTCAACTAAAAGCACCAGCAAA
GACATGAGACGGCTAAATATTCTGGGGCAATCGGAAAACTGTCTCGTGTG
GCTCCGCCTTCTTTCCCCCGTCGGCTTAAAACAAAGCCAACCATACGGTA
CCAAGGAGCGCACCACACTTCACGAGAGCGGTACCAAAAAAGCCGAAAGC
GTGACCAATCGGCCGACGAGCCAGTTAAAAGACGCACCATCTACGAGAAA
GAGACAGTTCTCCGATTTCTCGAGGGGTGCAGGTGGAGGGGGGGGGGGGG
GGGGGGGGGGAGAGAGGAGAAAACCAGCCAACGAGCAAGCACAGGAGAAA
AAGACGCGAGAAGGGAAGAGGGGGTCGGTCGCAACCACCCTCTTCTCTAC
ACTCACTCTCACTGACTCTCAAAATCCTGTGTTTCCGAGGGGCCTGGAGA
AAAACCAGACAGCAGCCAGCAGTTTCAACTCGACGGTGTCCCAAGAAAAT
AAAAAAACAGGCGTTTGCGTTCTCTAGTGGTTTCTTCCATCAAAGAGAGA
GAGAGCGGGAAACCGACCTCGGAGACAAAAGCAAAAGAACATTAACGGAG
AGCAACACAAAAGCCCGAAAAAAAAAAGGAAAAGTCAGCGAAACCATCTA
TGTACCCGGCGGCGTATTCGGTGCCGCCAGCTTTTTCGCGCCGATACGGC
ACGAAACTCCGCCGGGGGTGTACTCGGGAGAGGGGGAAGCGACAAGGTGG
CGACAGTTGGCAGGCAGGCAACTCCGCGTGTGCTTAAAGAGCAAGATTCT
AAAGGGGTCTCCTCCGAATTCGGCATGGTCTCTTGTTCCATTTGTTTCAT
GTTTTCATGTTCGCCAACCCATGCTCGGTGCCAATAAAAGCCTATATATA
TCGGTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1079:28003..28909+

>mRNA_L-elsbetiae_contig1079.736.1 ID=mRNA_L-elsbetiae_contig1079.736.1|Name=mRNA_L-elsbetiae_contig1079.736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig1079:28003..28909+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGACGGCTAAATATTCTGGGGCAATCGGAAAACTGTCTCGTGTGGCT
CCGCCTTCTTTCCCCCGTCGGCTTAAAACAAAGCCAACCATACGGTACCA
AGGAGCGCACCACACTTCACGAGAGCGGTACCAAAAAAGCCGAAAGCGTG
ACCAATCGGCCGACGAGCCAGTTAAAAGACGCACCATCTACGAGAAAGAG
ACAGTTCTCCGATTTCTCGAGGGGTGCAGGTGGAGGGGGGGGGGGGGGGG
GGGGGGGAGAGAGGAGAAAACCAGCCAACGAGCAAGCACAGGAGAAAAAG
ACGCGAGAAGGGAAGAGGGGGTCGGTCGCAACCACCCTCTTCTCTACACT
CACTCTCACTGACTCTCAAAATCCTGTGTTTCCGAGGGGCCTGGAGAAAA
ACCAGACAGCAGCCAGCAGTTTCAACTCGACGGTGTCCCAAGAAAATAAA
AAAACAGGCGTTTGCGTTCTCTAGATGAGACGGCTAAATATTCTGGGGCA
ATCGGAAAACTGTCTCGTGTGGCTCCGCCTTCTTTCCCCCGTCGGCTTAA
AACAAAGCCAACCATACGGTACCAAGGAGCGCACCACACTTCACGAGAGC
GGTACCAAAAAAGCCGAAAGCGTGACCAATCGGCCGACGAGCCAGTTAAA
AGACGCACCATCTACGAGAAAGAGACAGTTCTCCGATTTCTCGAGGGGTG
CAGGTGGAGGGGGGGGGGGGGGGGGGGGGGGAGAGAGGAGAAAACCAGCC
AACGAGCAAGCACAGGAGAAAAAGACGCGAGAAGGGAAGAGGGGGTCGGT
CGCAACCACCCTCTTCTCTACACTCACTCTCACTGACTCTCAAAATCCTG
TGTTTCCGAGGGGCCTGGAGAAAAACCAGACAGCAGCCAGCAGTTTCAAC
TCGACGGTGTCCCAAGAAAATAAAAAAACAGGCGTTTGCGTTCTCTAG
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