mRNA_L-elsbetiae_contig10785.728.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10785.728.1
Unique NamemRNA_L-elsbetiae_contig10785.728.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10785.728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10785contigL-elsbetiae_contig10785:667..1250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size584
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815297.063059-CDS-L-elsbetiae_contig10785:666..9871622815297.063059-CDS-L-elsbetiae_contig10785:666..987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10785 667..987 +
1691682823.2815876-CDS-L-elsbetiae_contig10785:666..9871691682823.2815876-CDS-L-elsbetiae_contig10785:666..987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10785 667..987 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815297.0739353-UTR-L-elsbetiae_contig10785:987..12501622815297.0739353-UTR-L-elsbetiae_contig10785:987..1250Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10785 988..1250 +
1691682823.290072-UTR-L-elsbetiae_contig10785:987..12501691682823.290072-UTR-L-elsbetiae_contig10785:987..1250Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10785 988..1250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10785.728.1prot_L-elsbetiae_contig10785.728.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10785 667..987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10785.728.1

>prot_L-elsbetiae_contig10785.728.1 ID=prot_L-elsbetiae_contig10785.728.1|Name=mRNA_L-elsbetiae_contig10785.728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MMNRATLLRQPSRGNCAIPLARGDTKWPRAQKKVPTITKPAERDETSLDG
ESTNTRQQPRHRANPRTTHLSRKNAPKNKPICFTRPSTRYAALREPSLEL
QNLPWH*
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mRNA from alignment at L-elsbetiae_contig10785:667..1250+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10785.728.1 ID=mRNA_L-elsbetiae_contig10785.728.1|Name=mRNA_L-elsbetiae_contig10785.728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=584bp|location=Sequence derived from alignment at L-elsbetiae_contig10785:667..1250+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGAATCGGGCGACCCTTCTTCGTCAGCCATCAAGAGGGAACTGCGC
GATACCACTTGCTCGCGGCGACACAAAGTGGCCGCGCGCGCAAAAAAAAG
TCCCAACGATTACAAAGCCCGCCGAGAGAGACGAGACGTCTCTTGATGGC
GAGTCGACGAACACGCGCCAGCAACCACGCCATCGCGCGAATCCACGCAC
AACACACTTGTCACGCAAAAATGCACCAAAGAACAAACCGATCTGCTTTA
CTCGCCCATCCACGAGGTATGCCGCTCTAAGAGAGCCAAGTCTAGAGCTG
CAAAATCTGCCTTGGCATTGACCCTTTGCATCCCGCCCTCCAAGCAACGA
ACAAGCACACAGACCTCCTGCCAGCCTGGCGAACAATATCCTACACGGGG
CTCTTTGTATGTACACTTGGAGCACGGCGAGGACATCAGCGGGAGATGCC
AAAACCCAGCAGCCAGATAACATTTTCTTGGACCGAAAGAAAGGGGGGGG
GGGTGAGTGTGTCTACACAAGAGCCCCACTGCCGGAGCGACTTTTTCAGA
GGCTGGAACGCAGACCGCCCACATCTGTGGAGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10785:667..1250+

>mRNA_L-elsbetiae_contig10785.728.1 ID=mRNA_L-elsbetiae_contig10785.728.1|Name=mRNA_L-elsbetiae_contig10785.728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig10785:667..1250+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGAATCGGGCGACCCTTCTTCGTCAGCCATCAAGAGGGAACTGCGC
GATACCACTTGCTCGCGGCGACACAAAGTGGCCGCGCGCGCAAAAAAAAG
TCCCAACGATTACAAAGCCCGCCGAGAGAGACGAGACGTCTCTTGATGGC
GAGTCGACGAACACGCGCCAGCAACCACGCCATCGCGCGAATCCACGCAC
AACACACTTGTCACGCAAAAATGCACCAAAGAACAAACCGATCTGCTTTA
CTCGCCCATCCACGAGGTATGCCGCTCTAAGAGAGCCAAGTCTAGAGCTG
CAAAATCTGCCTTGGCATTGAATGATGAATCGGGCGACCCTTCTTCGTCA
GCCATCAAGAGGGAACTGCGCGATACCACTTGCTCGCGGCGACACAAAGT
GGCCGCGCGCGCAAAAAAAAGTCCCAACGATTACAAAGCCCGCCGAGAGA
GACGAGACGTCTCTTGATGGCGAGTCGACGAACACGCGCCAGCAACCACG
CCATCGCGCGAATCCACGCACAACACACTTGTCACGCAAAAATGCACCAA
AGAACAAACCGATCTGCTTTACTCGCCCATCCACGAGGTATGCCGCTCTA
AGAGAGCCAAGTCTAGAGCTGCAAAATCTGCCTTGGCATTGA
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