mRNA_L-elsbetiae_contig10769.715.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10769.715.1
Unique NamemRNA_L-elsbetiae_contig10769.715.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10769.715.1 vs. uniprot
Match: K0CVW3_ALTMS (Endoribonuclease L-PSP family protein n=43 Tax=Alteromonadaceae TaxID=72275 RepID=K0CVW3_ALTMS)

HSP 1 Score: 235 bits (599), Expect = 5.110e-78
Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 1
Query:    1 MSKSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLVAETMEMVSEDFAEQAVQVFENLKAVCDAAGGTTNDLVKVNIFLIDLGHFATVNEIMSRYFNKPYPARAAVQVSALPKGAQIEIDGVMELPE 384
            MSKSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLVAETMEMVS+DF  QAVQVFEN+KAVC+AAGGTTNDLVKVNIFLIDLGHFATVNEIMSRYF KPYPARAAVQV+ALPKGAQIEIDGVMELPE
Sbjct:    1 MSKSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLVAETMEMVSDDFEAQAVQVFENIKAVCEAAGGTTNDLVKVNIFLIDLGHFATVNEIMSRYFTKPYPARAAVQVTALPKGAQIEIDGVMELPE 128          
BLAST of mRNA_L-elsbetiae_contig10769.715.1 vs. uniprot
Match: UPI001C48A733 (RidA family protein n=1 Tax=Alteromonas antoniana TaxID=2803813 RepID=UPI001C48A733)

HSP 1 Score: 224 bits (572), Expect = 6.690e-74
Identity = 113/128 (88.28%), Postives = 121/128 (94.53%), Query Frame = 1
Query:    1 MSKSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLVAETMEMVSEDFAEQAVQVFENLKAVCDAAGGTTNDLVKVNIFLIDLGHFATVNEIMSRYFNKPYPARAAVQVSALPKGAQIEIDGVMELPE 384
            MSKS+IQTD+AP AIGTYSQA+KAGTTVYLSGQIPLV +TMEMVSEDFAEQA QVF N+KAVC+AAGGTTNDLVKVNI+L DL HF TVNEIMS+YFNKPYPARAAVQVSALPKGAQIEIDGVMELPE
Sbjct:    1 MSKSVIQTDRAPEAIGTYSQAIKAGTTVYLSGQIPLVPDTMEMVSEDFAEQATQVFNNVKAVCEAAGGTTNDLVKVNIYLTDLSHFTTVNEIMSQYFNKPYPARAAVQVSALPKGAQIEIDGVMELPE 128          
BLAST of mRNA_L-elsbetiae_contig10769.715.1 vs. uniprot
Match: A0A3D8M6Z9_9ALTE (RidA family protein n=1 Tax=Alteromonas aestuariivivens TaxID=1938339 RepID=A0A3D8M6Z9_9ALTE)

HSP 1 Score: 222 bits (566), Expect = 5.500e-73
Identity = 111/128 (86.72%), Postives = 121/128 (94.53%), Query Frame = 1
Query:    1 MSKSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLVAETMEMVSEDFAEQAVQVFENLKAVCDAAGGTTNDLVKVNIFLIDLGHFATVNEIMSRYFNKPYPARAAVQVSALPKGAQIEIDGVMELPE 384
            MSK+IIQTD+AP AIGTYSQAVKAGTTVYLSGQIPLV ETMEMVSE+FAEQA QVFEN+KAVC+AAGGTTND+VKVNIFL+DL HFATVNEIMS+YFNKPYPARAA+ V  LPKGAQIEIDG+MELPE
Sbjct:    1 MSKAIIQTDRAPQAIGTYSQAVKAGTTVYLSGQIPLVPETMEMVSENFAEQATQVFENIKAVCEAAGGTTNDMVKVNIFLLDLAHFATVNEIMSKYFNKPYPARAAIGVKELPKGAQIEIDGIMELPE 128          
BLAST of mRNA_L-elsbetiae_contig10769.715.1 vs. uniprot
Match: A0A7Y6ZXW4_9ALTE (RidA family protein n=1 Tax=Alteromonadaceae bacterium TaxID=1916082 RepID=A0A7Y6ZXW4_9ALTE)

HSP 1 Score: 218 bits (556), Expect = 1.840e-71
Identity = 109/128 (85.16%), Postives = 120/128 (93.75%), Query Frame = 1
Query:    1 MSKSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLVAETMEMVSEDFAEQAVQVFENLKAVCDAAGGTTNDLVKVNIFLIDLGHFATVNEIMSRYFNKPYPARAAVQVSALPKGAQIEIDGVMELPE 384
            M+KSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLV ETME+VS+DFAEQA QVFENL AVC+AAGG  NDLVKVNI+L+DLGHFATVNEIM++YF+KPYPARAA+ +  LPKGAQIEIDGVMELPE
Sbjct:    1 MAKSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLVPETMELVSQDFAEQATQVFENLSAVCEAAGGKVNDLVKVNIYLLDLGHFATVNEIMAKYFSKPYPARAAIGIKELPKGAQIEIDGVMELPE 128          
BLAST of mRNA_L-elsbetiae_contig10769.715.1 vs. uniprot
Match: A0A4V2I6D1_9ALTE (RidA family protein n=1 Tax=Alteromonas sp. KUL49 TaxID=2480798 RepID=A0A4V2I6D1_9ALTE)

HSP 1 Score: 217 bits (553), Expect = 5.280e-71
Identity = 112/128 (87.50%), Postives = 121/128 (94.53%), Query Frame = 1
Query:    1 MSKSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLVAETMEMVSEDFAEQAVQVFENLKAVCDAAGGTTNDLVKVNIFLIDLGHFATVNEIMSRYFNKPYPARAAVQVSALPKGAQIEIDGVMELPE 384
            MSKSII TDKAPAAIGTYSQA KAGTTVYLSGQIPLV ETMEMVS+ FAEQAVQVFEN+KAVC+AAGG+T+ LVKVNIFL DL HFATVNEIMS+YF++PYPARAAVQV+ALPKGAQIEIDGVMELPE
Sbjct:    1 MSKSIIHTDKAPAAIGTYSQAAKAGTTVYLSGQIPLVPETMEMVSDVFAEQAVQVFENIKAVCEAAGGSTDHLVKVNIFLTDLSHFATVNEIMSQYFSQPYPARAAVQVAALPKGAQIEIDGVMELPE 128          
BLAST of mRNA_L-elsbetiae_contig10769.715.1 vs. uniprot
Match: UPI001C0A62E9 (RidA family protein n=1 Tax=Alteromonas sp. C1M14 TaxID=2841567 RepID=UPI001C0A62E9)

HSP 1 Score: 217 bits (553), Expect = 5.280e-71
Identity = 110/128 (85.94%), Postives = 120/128 (93.75%), Query Frame = 1
Query:    1 MSKSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLVAETMEMVSEDFAEQAVQVFENLKAVCDAAGGTTNDLVKVNIFLIDLGHFATVNEIMSRYFNKPYPARAAVQVSALPKGAQIEIDGVMELPE 384
            M+KSIIQTD AP AIGTYSQAVKAGTTVYLSGQIPL  +TMEMVSEDFAEQA QVFEN+KAVC+AAGGT NDLVKVNIFL+DL HFATVNEIMS+YF+KPYPARAA+ V+ALPKG+QIEIDGVMELPE
Sbjct:    1 MAKSIIQTDNAPQAIGTYSQAVKAGTTVYLSGQIPLNPQTMEMVSEDFAEQATQVFENVKAVCEAAGGTMNDLVKVNIFLLDLSHFATVNEIMSKYFSKPYPARAAIGVAALPKGSQIEIDGVMELPE 128          
BLAST of mRNA_L-elsbetiae_contig10769.715.1 vs. uniprot
Match: A0A1E8FHV6_9ALTE (Reactive intermediate/imine deaminase n=2 Tax=Alteromonadaceae TaxID=72275 RepID=A0A1E8FHV6_9ALTE)

HSP 1 Score: 217 bits (552), Expect = 7.500e-71
Identity = 109/128 (85.16%), Postives = 119/128 (92.97%), Query Frame = 1
Query:    1 MSKSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLVAETMEMVSEDFAEQAVQVFENLKAVCDAAGGTTNDLVKVNIFLIDLGHFATVNEIMSRYFNKPYPARAAVQVSALPKGAQIEIDGVMELPE 384
            M+KSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLV  TME+VS+DFAEQA QVFEN+KAVC+AAGGT NDLVKVNI+L+DL HFATVNEIMS+YF KPYPARAA+ +  LPKGAQIEIDGVMELPE
Sbjct:    1 MAKSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLVPATMELVSQDFAEQATQVFENIKAVCEAAGGTPNDLVKVNIYLLDLAHFATVNEIMSKYFAKPYPARAAIGIKELPKGAQIEIDGVMELPE 128          
BLAST of mRNA_L-elsbetiae_contig10769.715.1 vs. uniprot
Match: A0A2E2CCB9_9ALTE (RidA family protein n=9 Tax=Alteromonadaceae TaxID=72275 RepID=A0A2E2CCB9_9ALTE)

HSP 1 Score: 215 bits (548), Expect = 3.050e-70
Identity = 108/128 (84.38%), Postives = 120/128 (93.75%), Query Frame = 1
Query:    1 MSKSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLVAETMEMVSEDFAEQAVQVFENLKAVCDAAGGTTNDLVKVNIFLIDLGHFATVNEIMSRYFNKPYPARAAVQVSALPKGAQIEIDGVMELPE 384
            MSKSIIQTD APAAIGTYSQAVKAGTTVYLSGQIPLV ETM++VS+DFAEQA QVFEN+KAVC+AAGGTTNDLVKVNI+L+DLG+FATVNEIM++YF KPYPARAA+ + ALPK A IEIDGVMELPE
Sbjct:    1 MSKSIIQTDNAPAAIGTYSQAVKAGTTVYLSGQIPLVPETMQLVSDDFAEQATQVFENIKAVCEAAGGTTNDLVKVNIYLLDLGNFATVNEIMAKYFTKPYPARAAIGIKALPKDALIEIDGVMELPE 128          
BLAST of mRNA_L-elsbetiae_contig10769.715.1 vs. uniprot
Match: G4QF24_GLANF (Endoribonuclease L-PSP family protein n=3 Tax=Glaciecola TaxID=89404 RepID=G4QF24_GLANF)

HSP 1 Score: 215 bits (547), Expect = 4.340e-70
Identity = 111/128 (86.72%), Postives = 118/128 (92.19%), Query Frame = 1
Query:    1 MSKSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLVAETMEMVSEDFAEQAVQVFENLKAVCDAAGGTTNDLVKVNIFLIDLGHFATVNEIMSRYFNKPYPARAAVQVSALPKGAQIEIDGVMELPE 384
            M KSIIQTD+APAAIGTYSQAVKAGTTVYLSGQIPLV  TMEM+S+DFAEQAVQVFENLKAVC AAGG T+ LVKVNIFLIDLGHFATVNEIM+RYF +PYPARAA+ VS LPKGAQIEIDGVM LPE
Sbjct:    1 MPKSIIQTDEAPAAIGTYSQAVKAGTTVYLSGQIPLVPSTMEMISDDFAEQAVQVFENLKAVCTAAGGDTSHLVKVNIFLIDLGHFATVNEIMARYFKQPYPARAAIGVSQLPKGAQIEIDGVMVLPE 128          
BLAST of mRNA_L-elsbetiae_contig10769.715.1 vs. uniprot
Match: A0A1E7ZA08_9ALTE (Reactive intermediate/imine deaminase n=4 Tax=Alteromonadaceae TaxID=72275 RepID=A0A1E7ZA08_9ALTE)

HSP 1 Score: 211 bits (538), Expect = 1.020e-68
Identity = 105/128 (82.03%), Postives = 117/128 (91.41%), Query Frame = 1
Query:    1 MSKSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLVAETMEMVSEDFAEQAVQVFENLKAVCDAAGGTTNDLVKVNIFLIDLGHFATVNEIMSRYFNKPYPARAAVQVSALPKGAQIEIDGVMELPE 384
            M+KSII TD AP AIGTYSQAVKAGTTVYLSGQIPLV ETME++S+DFAEQA QVFEN+KAVC+AAGGT ND+VKVNIFL DL HFATVNEIM++YFNKPYPARAA+ V  LPKG+QIEIDG+MELPE
Sbjct:    1 MAKSIIHTDNAPQAIGTYSQAVKAGTTVYLSGQIPLVPETMEIISDDFAEQATQVFENVKAVCEAAGGTINDMVKVNIFLPDLSHFATVNEIMAKYFNKPYPARAAIGVKELPKGSQIEIDGIMELPE 128          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10769.715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K0CVW3_ALTMS5.110e-7894.53Endoribonuclease L-PSP family protein n=43 Tax=Alt... [more]
UPI001C48A7336.690e-7488.28RidA family protein n=1 Tax=Alteromonas antoniana ... [more]
A0A3D8M6Z9_9ALTE5.500e-7386.72RidA family protein n=1 Tax=Alteromonas aestuariiv... [more]
A0A7Y6ZXW4_9ALTE1.840e-7185.16RidA family protein n=1 Tax=Alteromonadaceae bacte... [more]
A0A4V2I6D1_9ALTE5.280e-7187.50RidA family protein n=1 Tax=Alteromonas sp. KUL49 ... [more]
UPI001C0A62E95.280e-7185.94RidA family protein n=1 Tax=Alteromonas sp. C1M14 ... [more]
A0A1E8FHV6_9ALTE7.500e-7185.16Reactive intermediate/imine deaminase n=2 Tax=Alte... [more]
A0A2E2CCB9_9ALTE3.050e-7084.38RidA family protein n=9 Tax=Alteromonadaceae TaxID... [more]
G4QF24_GLANF4.340e-7086.72Endoribonuclease L-PSP family protein n=3 Tax=Glac... [more]
A0A1E7ZA08_9ALTE1.020e-6882.03Reactive intermediate/imine deaminase n=4 Tax=Alte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10769contigL-elsbetiae_contig10769:4723..5109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score244.2
Seed ortholog evalue3.3e-62
Seed eggNOG ortholog715451.ambt_18305
Preferred nametdcF
KEGG rclassRC03275,RC03354
KEGG koko:K09022
KEGG ReactionR11098,R11099
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation initiation inhibitor, yjgF family
EggNOG OGs1MZ3J@1224,1S5XS@1236,4679E@72275,COG0251@1,COG0251@2
EC3.5.99.10
COG Functional cat.J
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size387
Cds size387
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815295.6842792-CDS-L-elsbetiae_contig10769:4722..51091622815295.6842792-CDS-L-elsbetiae_contig10769:4722..5109Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10769 4723..5109 -
1691682822.6060605-CDS-L-elsbetiae_contig10769:4722..51091691682822.6060605-CDS-L-elsbetiae_contig10769:4722..5109Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10769 4723..5109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10769.715.1prot_L-elsbetiae_contig10769.715.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10769 4723..5109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10769.715.1

>prot_L-elsbetiae_contig10769.715.1 ID=prot_L-elsbetiae_contig10769.715.1|Name=mRNA_L-elsbetiae_contig10769.715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
MSKSIIQTDKAPAAIGTYSQAVKAGTTVYLSGQIPLVAETMEMVSEDFAE
QAVQVFENLKAVCDAAGGTTNDLVKVNIFLIDLGHFATVNEIMSRYFNKP
YPARAAVQVSALPKGAQIEIDGVMELPE*
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mRNA from alignment at L-elsbetiae_contig10769:4723..5109-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10769.715.1 ID=mRNA_L-elsbetiae_contig10769.715.1|Name=mRNA_L-elsbetiae_contig10769.715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=387bp|location=Sequence derived from alignment at L-elsbetiae_contig10769:4723..5109- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTAAGTCTATTATTCAGACCGATAAGGCACCTGCCGCTATTGGTAC TTACAGTCAAGCAGTTAAGGCTGGCACTACGGTCTATCTTTCAGGCCAAA TTCCTTTGGTTGCAGAAACCATGGAAATGGTGTCAGAAGACTTCGCTGAA CAAGCGGTACAGGTTTTTGAAAACTTAAAAGCCGTGTGTGATGCCGCTGG TGGCACCACCAACGACTTGGTAAAAGTGAACATCTTTCTTATCGATTTAG GTCACTTTGCTACGGTTAATGAAATTATGAGCCGTTACTTCAACAAGCCA TACCCGGCTCGTGCTGCAGTACAAGTTTCTGCATTGCCTAAAGGCGCACA AATTGAAATCGACGGCGTGATGGAATTGCCGGAGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10769:4723..5109-

>mRNA_L-elsbetiae_contig10769.715.1 ID=mRNA_L-elsbetiae_contig10769.715.1|Name=mRNA_L-elsbetiae_contig10769.715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig10769:4723..5109- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTAAGTCTATTATTCAGACCGATAAGGCACCTGCCGCTATTGGTAC
TTACAGTCAAGCAGTTAAGGCTGGCACTACGGTCTATCTTTCAGGCCAAA
TTCCTTTGGTTGCAGAAACCATGGAAATGGTGTCAGAAGACTTCGCTGAA
CAAGCGGTACAGGTTTTTGAAAACTTAAAAGCCGTGTGTGATGCCGCTGG
TGGCACCACCAACGACTTGGTAAAAGTGAACATCTTTCTTATCGATTTAG
GTCACTTTGCTACGGTTAATGAAATTATGAGCCGTTACTTCAACAAGCCA
TACCCGGCTCGTGCTGCAGTACAAGTTTCTGCATTGCCTAAAGGCGCACA
AATTGAAATCGACGGCGTGATGGAATTGCCGGAGTAAATGTCTAAGTCTA
TTATTCAGACCGATAAGGCACCTGCCGCTATTGGTACTTACAGTCAAGCA
GTTAAGGCTGGCACTACGGTCTATCTTTCAGGCCAAATTCCTTTGGTTGC
AGAAACCATGGAAATGGTGTCAGAAGACTTCGCTGAACAAGCGGTACAGG
TTTTTGAAAACTTAAAAGCCGTGTGTGATGCCGCTGGTGGCACCACCAAC
GACTTGGTAAAAGTGAACATCTTTCTTATCGATTTAGGTCACTTTGCTAC
GGTTAATGAAATTATGAGCCGTTACTTCAACAAGCCATACCCGGCTCGTG
CTGCAGTACAAGTTTCTGCATTGCCTAAAGGCGCACAAATTGAAATCGAC
GGCGTGATGGAATTGCCGGAGTAA
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