mRNA_L-elsbetiae_contig10762.707.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10762.707.1
Unique NamemRNA_L-elsbetiae_contig10762.707.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10762.707.1 vs. uniprot
Match: D7FVD8_ECTSI (Tousled-like protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD8_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 8.950e-58
Identity = 135/195 (69.23%), Postives = 147/195 (75.38%), Query Frame = 1 
Query:   97 MEISGLSMENFPAAIAGNDSKTLRKLSLLEARMIGAGNESREASLPPNDGSRGSESNSNSMSTIGFGKPRPSAGSPGAQQTNSRGLGXXXXXXXXXXXRPRADPSREEGGAAKRKAPADG-GFSPPRPPSHSQNAGTPSTLSTSPGESRDGSSARHSAQGAGDDASGLKRARTGGVLQPXXXXXXXXHFSLPQGE 678
            ME SGL+M+NFPA IA NDSKTLRKLSLLEARM+GAGNESR+ASLPPN+GSRGSE+NSNSMSTIGF KPR SA SPG          X              DP ++ G   KRKA A+  GFSPPRPPSHSQNAGTPSTLSTSPGE  D +SAR ++QGAGDD  GLKRARTGG LQP XXXXXX  FSLPQGE
Sbjct:    1 MEFSGLAMDNFPA-IAANDSKTLRKLSLLEARMVGAGNESRDASLPPNEGSRGSENNSNSMSTIGFAKPRASAISPGXXXXXXXXXXX-------------TDPIKD-GSGGKRKAAAEADGFSPPRPPSHSQNAGTPSTLSTSPGEGGDWNSARQASQGAGDDGPGLKRARTGGTLQPPXXXXXX-RFSLPQGE 179
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BLAST of mRNA_L-elsbetiae_contig10762.707.1 vs. uniprot
Match: A0A6H5JDQ4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ4_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.050e-19
Identity = 65/91 (71.43%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:  409 SREEGGAAKRKAPADG-GFSPPRPPSHSQNAGTPSTLSTSPGESRDGSSARHSAQGAGDDASGLKRARTGGVLQPXXXXXXXXHFSLPQGE 678
            SR E  A +R+A A+  GFSPPRPPSH QN GTPSTLSTSPG   D SSAR ++QGAGDD  GLKRARTGG LQP XXXXXX  F LPQGE
Sbjct:   75 SRMEVVANERRAAAEADGFSPPRPPSHLQNTGTPSTLSTSPGAGGDWSSARQASQGAGDDGPGLKRARTGGTLQPPXXXXXX-RFCLPQGE 164
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10762.707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVD8_ECTSI8.950e-5869.23Tousled-like protein kinase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JDQ4_9PHAE6.050e-1971.43Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10762contigL-elsbetiae_contig10762:3415..5190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.7
Seed ortholog evalue7.3e-52
Seed eggNOG ortholog2880.D7FVD8
Preferred nameTLK2
KEGG koko:K08864
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0010468,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019222,GO:0019538,GO:0036211,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0060147,GO:0060255,GO:0060966,GO:0060968,GO:0065007,GO:0071704,GO:0140096,GO:1900368,GO:1901564
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG1151@1,KOG1151@2759
EC2.7.11.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Ec32 ortholog descriptionTousled-like protein kinase
Ec32 orthologEc-14_000740.2
Exons4
Model size693
Cds size690
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10762.707.1prot_L-elsbetiae_contig10762.707.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10762 3417..5190 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815293.671908-CDS-L-elsbetiae_contig10762:3416..36651622815293.671908-CDS-L-elsbetiae_contig10762:3416..3665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10762 3417..3665 -
1691682822.3367462-CDS-L-elsbetiae_contig10762:3416..36651691682822.3367462-CDS-L-elsbetiae_contig10762:3416..3665Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10762 3417..3665 -
1622815293.6826406-CDS-L-elsbetiae_contig10762:3958..41211622815293.6826406-CDS-L-elsbetiae_contig10762:3958..4121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10762 3959..4121 -
1691682822.349797-CDS-L-elsbetiae_contig10762:3958..41211691682822.349797-CDS-L-elsbetiae_contig10762:3958..4121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10762 3959..4121 -
1622815293.694338-CDS-L-elsbetiae_contig10762:4501..46841622815293.694338-CDS-L-elsbetiae_contig10762:4501..4684Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10762 4502..4684 -
1691682822.3586063-CDS-L-elsbetiae_contig10762:4501..46841691682822.3586063-CDS-L-elsbetiae_contig10762:4501..4684Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10762 4502..4684 -
1622815293.7068539-CDS-L-elsbetiae_contig10762:5095..51901622815293.7068539-CDS-L-elsbetiae_contig10762:5095..5190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10762 5096..5190 -
1691682822.3707538-CDS-L-elsbetiae_contig10762:5095..51901691682822.3707538-CDS-L-elsbetiae_contig10762:5095..5190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10762 5096..5190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10762.707.1

>prot_L-elsbetiae_contig10762.707.1 ID=prot_L-elsbetiae_contig10762.707.1|Name=mRNA_L-elsbetiae_contig10762.707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=230bp
RAPGCRGWPSTCTTSSLQASLLPCAFGRCPPRMEISGLSMENFPAAIAGN
DSKTLRKLSLLEARMIGAGNESREASLPPNDGSRGSESNSNSMSTIGFGK
PRPSAGSPGAQQTNSRGLGGGGGGGGGGGGRPRADPSREEGGAAKRKAPA
DGGFSPPRPPSHSQNAGTPSTLSTSPGESRDGSSARHSAQGAGDDASGLK
RARTGGVLQPPPPPPPPPHFSLPQGERDRR
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mRNA from alignment at L-elsbetiae_contig10762:3415..5190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10762.707.1 ID=mRNA_L-elsbetiae_contig10762.707.1|Name=mRNA_L-elsbetiae_contig10762.707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1776bp|location=Sequence derived from alignment at L-elsbetiae_contig10762:3415..5190- (Laminarionema elsbetiae ELsaHSoW15)
CGTGCCCCAGGCTGCAGGGGATGGCCTTCGACTTGTACCACATCATCTCT
ACAGGCCTCTCTCCTTCCCTGTGCGTTTGGGCGCTGTCCTCCCAGGTGAA
TAAGGTATCTCTTATGTTTATTCAGTTCCACCTCTGCGGTGATCCGCCGA
CGGTTCCCCCCATCTCTCTGTCTCGGGTCTCGGATAAGAACTCCCAATCA
GGGGACGGAGGGTATCTCTCTCCCCACCCTGAAGGCGGGACGGATTCTCT
CTTTCAGTCGGCAGTTTTCGTGCACTTTCCTTGTTCCTTGTCAGCCACAC
GAGAGAGTAGTAAATAGAGCAGGACGCGAACGCAGCAACCAGCGCTGTAC
GAATTCGTCTAAACCGTCCCTTGTTGTACGATATTGAAGGCGAGTAGGCG
CCGAAATTTGAATTTTTGGTGATCGACTTTGTCTCCACTGGTGTCTCATT
TCTCCACGCGGGCCTCCCCCGCCTGTCTCTCTCGCTCTTCCTTCATTCCG
AAACAGGATGGAAATCTCGGGCCTTAGCATGGAGAACTTCCCCGCCGCAA
TCGCGGGAAACGACTCCAAGACGCTGAGAAAGCTCAGCCTCTTGGAAGCC
CGCATGATCGGGGCCGGGAACGAGTCTCGGGAAGCGTCGCTTCCGCCGAA
CGACGGAAGTCGAGGCAGCGAAAGCAACAGCAACTCCATGTGAGTCAGTA
ATTTAACGCGCTTGCAGGTGATGGGGTGCTTAGCCTTTGTGAAGCTCATC
CTCTCCTTTCGCGAGCGGGGTCTCCGAGGTTGCAATCAAACCCTCCTATC
GAGTGGGGGCGCAGGGCGCGTTTAGCGCACCGGTGGGTATGGGCAAACCA
ACCAACTTGAGCGAGCAGGGGTGGACGGGCGGCGGCCAGAAAGTCTTACG
ACGGTAGTAAAGGTAGTTCTAGCGGTGGTGCCTGAAGACGCCCGTTGACC
TCTTGCTGCACACGGTCGGTAGCTGTTGTATTCATTGAAAGTGTCTTCCC
TTACACTTATGCAAGAAACAACGTGACACTACACCGACCCATGTTTGAAC
ATCTCTCATTTACGCACAGGTCCACGATTGGGTTTGGTAAACCTCGTCCT
AGCGCGGGTTCACCCGGGGCGCAGCAGACCAACTCACGCGGCCTCGGAGG
TGGAGGTGGAGGCGGAGGCGGAGGCGGAGGCAGACCTAGGGCAGACCCGA
GCAGGGAGGAGGGGGGTGCTGCCAAGCGAAAGGCGAGTCGGAGATCGCTG
TCGCCGGCGCGTTGGTAGTTCAGTTCAGTGATGTATACAACTCATCGCCG
AGGGATGCTGCTCTGCGCGCGCTATATCTGTATATAAATATATATACGTA
TATATATTACAAGTGCAAGAAAAAAACACAGATACGAGTTTAAAGACATG
TGGGTGCATTGGGACACATACCCGCACGCCAAGAAACAACAAACCGACCA
GCTTCAGCCCGCTTCGCTCGCAACCAACTTTGCGTGTTCATTTTATTTAT
CTGTTGCGACTTCGACTCGCCGCAGGCACCGGCGGATGGTGGCTTCAGCC
CACCTCGTCCGCCGTCTCACTCGCAAAACGCCGGAACTCCGAGCACCCTG
AGCACGAGCCCCGGAGAAAGTCGAGATGGGAGCAGCGCTCGTCACTCGGC
GCAGGGCGCGGGAGACGACGCGTCCGGTCTGAAGCGTGCGCGTACGGGAG
GCGTCCTCCAGCCGCCGCCGCCCCCTCCGCCGCCGCCCCACTTCTCACTG
CCCCAAGGCGAGCGAGATCGACGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10762:3415..5190-

>mRNA_L-elsbetiae_contig10762.707.1 ID=mRNA_L-elsbetiae_contig10762.707.1|Name=mRNA_L-elsbetiae_contig10762.707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1380bp|location=Sequence derived from alignment at L-elsbetiae_contig10762:3415..5190- (Laminarionema elsbetiae ELsaHSoW15)
CGTGCCCCAGGCTGCAGGGGATGGCCTTCGACTTGTACCACATCATCTCT
ACAGGCCTCTCTCCTTCCCTGTGCGTTTGGGCGCTGTCCTCCCAGCGTGC
CCCAGGCTGCAGGGGATGGCCTTCGACTTGTACCACATCATCTCTACAGG
CCTCTCTCCTTCCCTGTGCGTTTGGGCGCTGTCCTCCCAGGATGGAAATC
TCGGGCCTTAGCATGGAGAACTTCCCCGCCGCAATCGCGGGAAACGACTC
CAAGACGCTGAGAAAGCTCAGCCTCTTGGAAGCCCGCATGATCGGGGCCG
GGAACGAGTCTCGGGAAGCGTCGCTTCCGCCGAACGACGGAAGTCGAGGC
AGCGAAAGCAACAGCAACTCCATGATGGAAATCTCGGGCCTTAGCATGGA
GAACTTCCCCGCCGCAATCGCGGGAAACGACTCCAAGACGCTGAGAAAGC
TCAGCCTCTTGGAAGCCCGCATGATCGGGGCCGGGAACGAGTCTCGGGAA
GCGTCGCTTCCGCCGAACGACGGAAGTCGAGGCAGCGAAAGCAACAGCAA
CTCCATGTCCACGATTGGGTTTGGTAAACCTCGTCCTAGCGCGGGTTCAC
CCGGGGCGCAGCAGACCAACTCACGCGGCCTCGGAGGTGGAGGTGGAGGC
GGAGGCGGAGGCGGAGGCAGACCTAGGGCAGACCCGAGCAGGGAGGAGGG
GGGTGCTGCCAAGCGAAAGGTCCACGATTGGGTTTGGTAAACCTCGTCCT
AGCGCGGGTTCACCCGGGGCGCAGCAGACCAACTCACGCGGCCTCGGAGG
TGGAGGTGGAGGCGGAGGCGGAGGCGGAGGCAGACCTAGGGCAGACCCGA
GCAGGGAGGAGGGGGGTGCTGCCAAGCGAAAGGCACCGGCGGATGGTGGC
TTCAGCCCACCTCGTCCGCCGTCTCACTCGCAAAACGCCGGAACTCCGAG
CACCCTGAGCACGAGCCCCGGAGAAAGTCGAGATGGGAGCAGCGCTCGTC
ACTCGGCGCAGGGCGCGGGAGACGACGCGTCCGGTCTGAAGCGTGCGCGT
ACGGGAGGCGTCCTCCAGCCGCCGCCGCCCCCTCCGCCGCCGCCCCACTT
CTCACTGCCCCAAGGCGAGCGAGATCGACGGGCACCGGCGGATGGTGGCT
TCAGCCCACCTCGTCCGCCGTCTCACTCGCAAAACGCCGGAACTCCGAGC
ACCCTGAGCACGAGCCCCGGAGAAAGTCGAGATGGGAGCAGCGCTCGTCA
CTCGGCGCAGGGCGCGGGAGACGACGCGTCCGGTCTGAAGCGTGCGCGTA
CGGGAGGCGTCCTCCAGCCGCCGCCGCCCCCTCCGCCGCCGCCCCACTTC
TCACTGCCCCAAGGCGAGCGAGATCGACGG
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