mRNA_L-elsbetiae_contig10727.678.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10727.678.1
Unique NamemRNA_L-elsbetiae_contig10727.678.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10727.678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10727contigL-elsbetiae_contig10727:2576..3413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size579
Cds size576
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815291.1267781-CDS-L-elsbetiae_contig10727:2575..27261622815291.1267781-CDS-L-elsbetiae_contig10727:2575..2726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10727 2576..2726 +
1691682820.7267435-CDS-L-elsbetiae_contig10727:2575..27261691682820.7267435-CDS-L-elsbetiae_contig10727:2575..2726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10727 2576..2726 +
1622815291.1399899-CDS-L-elsbetiae_contig10727:2987..34121622815291.1399899-CDS-L-elsbetiae_contig10727:2987..3412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10727 2988..3412 +
1691682820.7355185-CDS-L-elsbetiae_contig10727:2987..34121691682820.7355185-CDS-L-elsbetiae_contig10727:2987..3412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10727 2988..3412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10727.678.1prot_L-elsbetiae_contig10727.678.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10727 2576..3412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10727.678.1

>prot_L-elsbetiae_contig10727.678.1 ID=prot_L-elsbetiae_contig10727.678.1|Name=mRNA_L-elsbetiae_contig10727.678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=192bp
GDAAAARDSVEAMVERAMDSATEAQAMAAAAIAAEAGAPPTAMAVEDSAS
VSEGEAVAALASSLSLSPRREPEAAAPEAPSAAAAPVPASAETAAELLEG
IGMAEGAEDGTAGGLAALLQEADFAVATFDAAGDGGEAPAVAGAGAAADG
GAAALALPLAGDGAGDDAGGAAAPPAAAVTAQEDDAMDVDDG
back to top

mRNA from alignment at L-elsbetiae_contig10727:2576..3413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10727.678.1 ID=mRNA_L-elsbetiae_contig10727.678.1|Name=mRNA_L-elsbetiae_contig10727.678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=838bp|location=Sequence derived from alignment at L-elsbetiae_contig10727:2576..3413+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGACGCGGCGGCGGCGCGAGACAGCGTGGAAGCGATGGTGGAGAGGGC
GATGGATTCGGCGACAGAGGCGCAGGCGATGGCCGCGGCCGCGATCGCAG
CGGAGGCTGGGGCTCCGCCGACGGCGATGGCCGTGGAAGATTCGGCGTCA
GGTGGGGTCGTGCGTGTGGGGTGGGTGGGGGATGAGGAGTGAGTGGTCGT
TTCTCTCTTCTCCTTGTCGTTGTTGTTGTTTGTTGTGGTGGTTTCGGTTT
TGTGTTTCTGCTGTCGCCGTAGTCGTGTTCTTGTGTAAGAACAGCACCTC
CATCACTTTGATATTTTGATGTCTTTAGCTCTCCCTCTCTCTCTATCTCT
CTCTCTCTCTCTCTCTCTTGCTCCGTGCCCTGTTTCGACCTCCGTGGCGC
TTGTCTGAGCAGTCTCCGAGGGGGAAGCGGTGGCCGCCCTGGCTTCTTCT
CTGTCGCTGTCTCCCCGCCGGGAGCCGGAAGCAGCGGCACCAGAAGCGCC
GTCGGCAGCAGCAGCACCAGTACCAGCATCAGCAGAAACCGCAGCGGAGC
TGCTCGAAGGCATAGGCATGGCAGAGGGGGCGGAAGATGGGACCGCGGGG
GGGCTCGCGGCCCTCCTCCAGGAGGCAGACTTCGCGGTAGCCACGTTCGA
CGCGGCGGGTGACGGGGGTGAGGCACCCGCCGTCGCCGGCGCCGGCGCTG
CTGCTGACGGCGGTGCTGCGGCCCTTGCTCTTCCCTTGGCTGGGGATGGC
GCCGGTGACGACGCCGGCGGCGCTGCCGCGCCACCGGCGGCAGCGGTGAC
GGCCCAGGAAGACGACGCAATGGACGTGGATGACGGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10727:2576..3413+

>mRNA_L-elsbetiae_contig10727.678.1 ID=mRNA_L-elsbetiae_contig10727.678.1|Name=mRNA_L-elsbetiae_contig10727.678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1152bp|location=Sequence derived from alignment at L-elsbetiae_contig10727:2576..3413+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGACGCGGCGGCGGCGCGAGACAGCGTGGAAGCGATGGTGGAGAGGGC
GATGGATTCGGCGACAGAGGCGCAGGCGATGGCCGCGGCCGCGATCGCAG
CGGAGGCTGGGGCTCCGCCGACGGCGATGGCCGTGGAAGATTCGGCGTCA
GGGTGACGCGGCGGCGGCGCGAGACAGCGTGGAAGCGATGGTGGAGAGGG
CGATGGATTCGGCGACAGAGGCGCAGGCGATGGCCGCGGCCGCGATCGCA
GCGGAGGCTGGGGCTCCGCCGACGGCGATGGCCGTGGAAGATTCGGCGTC
AGTCTCCGAGGGGGAAGCGGTGGCCGCCCTGGCTTCTTCTCTGTCGCTGT
CTCCCCGCCGGGAGCCGGAAGCAGCGGCACCAGAAGCGCCGTCGGCAGCA
GCAGCACCAGTACCAGCATCAGCAGAAACCGCAGCGGAGCTGCTCGAAGG
CATAGGCATGGCAGAGGGGGCGGAAGATGGGACCGCGGGGGGGCTCGCGG
CCCTCCTCCAGGAGGCAGACTTCGCGGTAGCCACGTTCGACGCGGCGGGT
GACGGGGGTGAGGCACCCGCCGTCGCCGGCGCCGGCGCTGCTGCTGACGG
CGGTGCTGCGGCCCTTGCTCTTCCCTTGGCTGGGGATGGCGCCGGTGACG
ACGCCGGCGGCGCTGCCGCGCCACCGGCGGCAGCGGTGACGGCCCAGGAA
GACGACGCAATGGACGTGGATGACGGATCTCCGAGGGGGAAGCGGTGGCC
GCCCTGGCTTCTTCTCTGTCGCTGTCTCCCCGCCGGGAGCCGGAAGCAGC
GGCACCAGAAGCGCCGTCGGCAGCAGCAGCACCAGTACCAGCATCAGCAG
AAACCGCAGCGGAGCTGCTCGAAGGCATAGGCATGGCAGAGGGGGCGGAA
GATGGGACCGCGGGGGGGCTCGCGGCCCTCCTCCAGGAGGCAGACTTCGC
GGTAGCCACGTTCGACGCGGCGGGTGACGGGGGTGAGGCACCCGCCGTCG
CCGGCGCCGGCGCTGCTGCTGACGGCGGTGCTGCGGCCCTTGCTCTTCCC
TTGGCTGGGGATGGCGCCGGTGACGACGCCGGCGGCGCTGCCGCGCCACC
GGCGGCAGCGGTGACGGCCCAGGAAGACGACGCAATGGACGTGGATGACG
GA
back to top