mRNA_L-elsbetiae_contig10680.641.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10680.641.1
Unique NamemRNA_L-elsbetiae_contig10680.641.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10680.641.1 vs. uniprot
Match: D7FUF5_ECTSI (Conserved oligomeric Golgi complex subunit 7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUF5_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 2.100e-39
Identity = 75/87 (86.21%), Postives = 77/87 (88.51%), Query Frame = 1 
Query:   43 GEAAKFCTAWLLCVGSATVGCLLAKVLTLPQLSERGVKHLEADLKYLSNVFHALDLATPPVLEHLSLLAALGRDEAETHLAQETAAG 303
            GEAAKFCTAWLLCVGSATVGCLLAKVL+LPQLSERG KHLEADLKYLSNV HALDL  P VLEH+SLLA L RDEA THL QET AG
Sbjct:  831 GEAAKFCTAWLLCVGSATVGCLLAKVLSLPQLSERGTKHLEADLKYLSNVLHALDLPAPSVLEHVSLLAGLSRDEAATHLVQETVAG 917
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10680.641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF5_ECTSI2.100e-3986.21Conserved oligomeric Golgi complex subunit 7 n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10680contigL-elsbetiae_contig10680:4688..5409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.4
Seed ortholog evalue8.8e-34
Seed eggNOG ortholog2880.D7FUF5
Preferred nameCOG7
KEGG koko:K10878,ko:K17586,ko:K20294
KEGG Pathwayko04113,map04113
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000280,GO:0000910,GO:0000916,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005794,GO:0005802,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0006996,GO:0007010,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007276,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0017119,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030029,GO:0030036,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032504,GO:0032506,GO:0032588,GO:0032991,GO:0033036,GO:0033206,GO:0033365,GO:0034067,GO:0034613,GO:0034645,GO:0036063,GO:0036211,GO:0036213,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044837,GO:0045184,GO:0046907,GO:0048193,GO:0048232,GO:0048285,GO:0048609,GO:0050821,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061640,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903046
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsKOG4182@1,KOG4182@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03400,ko04131
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815287.1855445-CDS-L-elsbetiae_contig10680:4687..48041622815287.1855445-CDS-L-elsbetiae_contig10680:4687..4804Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10680 4688..4804 +
1691682818.2288759-CDS-L-elsbetiae_contig10680:4687..48041691682818.2288759-CDS-L-elsbetiae_contig10680:4687..4804Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10680 4688..4804 +
1622815287.1958559-CDS-L-elsbetiae_contig10680:5220..54091622815287.1958559-CDS-L-elsbetiae_contig10680:5220..5409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10680 5221..5409 +
1691682818.2420723-CDS-L-elsbetiae_contig10680:5220..54091691682818.2420723-CDS-L-elsbetiae_contig10680:5220..5409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10680 5221..5409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10680.641.1prot_L-elsbetiae_contig10680.641.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10680 4688..5409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10680.641.1

>prot_L-elsbetiae_contig10680.641.1 ID=prot_L-elsbetiae_contig10680.641.1|Name=mRNA_L-elsbetiae_contig10680.641.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
EEEEEEEEEEEEEEGEAAKFCTAWLLCVGSATVGCLLAKVLTLPQLSERG
VKHLEADLKYLSNVFHALDLATPPVLEHLSLLAALGRDEAETHLAQETAA
GK
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mRNA from alignment at L-elsbetiae_contig10680:4688..5409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10680.641.1 ID=mRNA_L-elsbetiae_contig10680.641.1|Name=mRNA_L-elsbetiae_contig10680.641.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=722bp|location=Sequence derived from alignment at L-elsbetiae_contig10680:4688..5409+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGAAGAAGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGGAGAAGC
CGCAAAGTTCTGCACGGCATGGCTGCTGTGCGTCGGGAGCGCGACGGTCG
GCTGCCTGCTGGCCAAGGTGCGTATGTAGCGTCTTGTTGCTGTACGGCGC
CACTACTCCCCTTTAGTTTCTTTGCTTTTACTGACCCTTCGGGTCCGCTT
TTTATTTTTCGGAACACCCGTTCTAGGGTAAGTTAGCCTGTGACCACGGG
AATCGACTGCATGAAGTGTTGGATTTATACGGACATATGGAGGTACTGGA
TAGAGAGATGGGAACGGTTTTTGATGTGAACAACCAACAACCGCAGCCAC
AGCAACCTCCCAGCAAACGAAACCGAAGATTCTGCAGTCCGATCAAAGCC
CGTCAGGCGTGCTCTCCGTGCCGGCTCTTGAGAAGCACAAAGGGCTCTGG
TTTCGCATGCAACGGCTGCGTGAGTACACAATACTGAGTGCGCCGCTCCA
AATGCCTTTGCGAACGGATCGACGTTGCCCCAGGTCTTGACGCTGCCGCA
ACTCAGCGAGCGGGGCGTGAAGCACCTGGAGGCGGACCTGAAGTACCTTT
CGAACGTGTTCCACGCACTGGATCTCGCCACGCCTCCTGTGTTGGAGCAC
CTGAGCCTGCTGGCGGCCCTGGGCCGGGATGAGGCGGAGACGCACTTGGC
GCAGGAAACGGCCGCCGGTAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10680:4688..5409+

>mRNA_L-elsbetiae_contig10680.641.1 ID=mRNA_L-elsbetiae_contig10680.641.1|Name=mRNA_L-elsbetiae_contig10680.641.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig10680:4688..5409+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGAAGAAGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGGAGAAGC
CGCAAAGTTCTGCACGGCATGGCTGCTGTGCGTCGGGAGCGCGACGGTCG
GCTGCCTGCTGGCCAAGGAGGAAGAAGAGGAAGAAGAGGAGGAGGAGGAG
GAGGAGGAGGGAGAAGCCGCAAAGTTCTGCACGGCATGGCTGCTGTGCGT
CGGGAGCGCGACGGTCGGCTGCCTGCTGGCCAAGGTCTTGACGCTGCCGC
AACTCAGCGAGCGGGGCGTGAAGCACCTGGAGGCGGACCTGAAGTACCTT
TCGAACGTGTTCCACGCACTGGATCTCGCCACGCCTCCTGTGTTGGAGCA
CCTGAGCCTGCTGGCGGCCCTGGGCCGGGATGAGGCGGAGACGCACTTGG
CGCAGGAAACGGCCGCCGGTAAGGTCTTGACGCTGCCGCAACTCAGCGAG
CGGGGCGTGAAGCACCTGGAGGCGGACCTGAAGTACCTTTCGAACGTGTT
CCACGCACTGGATCTCGCCACGCCTCCTGTGTTGGAGCACCTGAGCCTGC
TGGCGGCCCTGGGCCGGGATGAGGCGGAGACGCACTTGGCGCAGGAAACG
GCCGCCGGTAAG
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