mRNA_L-elsbetiae_contig10671.633.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10671.633.1
Unique NamemRNA_L-elsbetiae_contig10671.633.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10671.633.1 vs. uniprot
Match: D7FKU0_ECTSI (Putative serine rich protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU0_ECTSI)

HSP 1 Score: 314 bits (805), Expect = 2.010e-100
Identity = 143/202 (70.79%), Postives = 166/202 (82.18%), Query Frame = 1
Query:    1 PMEMEPTECRGKRGVAFDFKDANDLDALAPGMAWMYNWSPGIIAEDVKVAQAASGVEYIPMIWGEKDMEADRLLHLEALGESSHLLGFNEPNFGGQGNLTPAEAAEIWPTVKDEAGVLGADIVSPAVNFCGGDCNREDPILWLDEFFGKCGGAKNCRVTAIAVHSFTCEVCKQLLSCWLNKILHGYLKYGLPLWLTEFACAD 606
            P+  EPTEC GKRGV+FDFKDA+DLDALAPGM+W YNWSP IIA +VK+AQ++SG EYIPMIWGEKD+++ RL +L +LG+SSH+LGFNEPNFG Q NLTP EAA +W TVK EA  LGA+IVSPAVNFCGGDC +EDP  WLD+FF  C G   C VTAIAVH +TCEV       +LNKILHGYLKYGLP+W+TEFACAD
Sbjct:  121 PVATEPTECHGKRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIWGEKDLDSTRLANLASLGQSSHMLGFNEPNFGSQANLTPQEAAALWSTVKSEAATLGAEIVSPAVNFCGGDCTKEDPYEWLDDFFSACEG---CDVTAIAVHIYTCEV------RYLNKILHGYLKYGLPIWITEFACAD 313          
BLAST of mRNA_L-elsbetiae_contig10671.633.1 vs. uniprot
Match: A0A6H5KQ88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ88_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 1.190e-70
Identity = 109/206 (52.91%), Postives = 146/206 (70.87%), Query Frame = 1
Query:    1 PMEMEPTECRGKRGVAFDFKDANDLDALAPGMAWMYNWSPGIIAEDVKVAQAASGVEYIPMIWGEKDMEADRLLHLEALGESS-HLLGFNEPNFGGQGNLTPAEAAEIWPTVKDEAGVLGADIVSPAVNFCGGDCNREDPILWLDEFFGKCGGAKN----CRVTAIAVHSFTCEVCKQLLSCWLNKILHGYL-KYGLPLWLTEFAC 600
            P+E+ PT+C  KRGVAF FK+++DL  L  G++W Y+WSPG +A+ +  A    G  Y+PMIWGE D+  +RL  L  +G++S +LLGFNEPN+G Q NLTP EAA++WP V+ +A  LG ++VSPAVNFC G+C  EDPI WLD+FF  CGG       C +T IA+HS+TC+V       +LNK +H Y+ +YGLP+WLTEFAC
Sbjct:   53 PVELVPTQCSSKRGVAFGFKESDDLYTLKKGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDLAWVGDTSPYLLGFNEPNYGEQANLTPQEAADLWPQVRQQADDLGMELVSPAVNFCYGNCVEEDPIKWLDDFFEACGGDVEGRDFCGITYIAIHSYTCKV------KYLNKHIHMYVQRYGLPIWLTEFAC 252          
BLAST of mRNA_L-elsbetiae_contig10671.633.1 vs. uniprot
Match: D8LG92_ECTSI (F5/8 type C domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG92_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 2.400e-69
Identity = 111/206 (53.88%), Postives = 145/206 (70.39%), Query Frame = 1
Query:    1 PMEMEPTECRGKRGVAFDFKDANDLDALAPGMAWMYNWSPGIIAEDVKVAQAASGVEYIPMIWGEKDMEADRLLHLEALGESS-HLLGFNEPNFGGQGNLTPAEAAEIWPTVKDEAGVLGADIVSPAVNFCGGDCNREDPILWLDEFFGKCGGAKN----CRVTAIAVHSFTCEVCKQLLSCWLNKILHGYL-KYGLPLWLTEFAC 600
            P+E+ PT+C  KRGVAF FK++ DL  L  G++W Y+WSPG +A+ +  A    G  Y+PMIWGE D+  +RL  L  +G++S +LLGFNEPN+G Q NLTP EAA++WP V+ +A  LG ++VSPAVNFC G+C  EDPI WLDEFF  CGG       C +T IA+HS+TCEV       +LNK +H Y+ +YGLP+WLTEFAC
Sbjct:   90 PVELVPTQCSSKRGVAFGFKESGDLYTLKTGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDLAWVGDTSPYLLGFNEPNYGEQANLTPQEAADLWPQVRQQADDLGMELVSPAVNFCYGNCVEEDPITWLDEFFEACGGDVEDRDFCGITHIAIHSYTCEV------KYLNKHIHMYVQRYGLPIWLTEFAC 289          
BLAST of mRNA_L-elsbetiae_contig10671.633.1 vs. uniprot
Match: A0A4U1JHY0_9DELT (Glyco_hydro_cc domain-containing protein n=2 Tax=Polyangium fumosum TaxID=889272 RepID=A0A4U1JHY0_9DELT)

HSP 1 Score: 179 bits (455), Expect = 1.650e-52
Identity = 94/197 (47.72%), Postives = 115/197 (58.38%), Query Frame = 1
Query:   16 PTECRGKRGVAFDFKDANDLDALAPGMAWMYNWSPGIIAEDVKVAQAASGVEYIPMIWGEKDMEADRLLHLEALGESSHLLGFNEPNFGGQGNLTPAEAAEIWPTVKDEAGVLGADIVSPAVNFCGGDCNREDPILWLDEFFGKCGGAKNCRVTAIAVHSFTCEVCKQLLSCWLNKILHGYLKYGLPLWLTEFACAD 606
            P  C  KRGVA+ +    DL AL+ G+ W YNW+      DV  A A  GVEY+PM WGE  +     L  E   ++ HLLGFNEPNFG Q NLTP +AA +WP ++D A      IVSPAVNFCGG CN  DP  WLD+FF  C G   C V AIA+H + C+     L+ +L +      KY   LWLTEF+C D
Sbjct:   58 PAAC--KRGVAYGYHSVADLTALSKGIGWWYNWATKPDNTDVADAHAGLGVEYVPMAWGEASLVG---LSAEVPADARHLLGFNEPNFGSQANLTPTQAAALWPQIEDFAEQHDLVIVSPAVNFCGGTCNVADPFEWLDQFFAACQG---CTVDAIAMHWYACD--GSALTWYLQQFES---KYTQKLWLTEFSCLD 241          
BLAST of mRNA_L-elsbetiae_contig10671.633.1 vs. uniprot
Match: UPI001CCFE65D (glycoside hydrolase family protein n=1 Tax=Nannocystis pusilla TaxID=889268 RepID=UPI001CCFE65D)

HSP 1 Score: 172 bits (437), Expect = 1.230e-49
Identity = 88/200 (44.00%), Postives = 120/200 (60.00%), Query Frame = 1
Query:   13 EPTECRGKRGVAFDFKDANDLDALAPGMAWMYNWS--PGIIAEDVKVAQAASGVEYIPMIWGEKDMEADRLLHLEALGESSHLLGFNEPNFGGQGNLTPAEAAEIWPTVKDEAGVLGADIVSPAVNFCGGDCNREDPILWLDEFFGKCGGAKNCRVTAIAVHSFTCEVCKQLLSCWLNKILHGYLKYGLPLWLTEFACAD 606
            +P     KRGVA+ +  A DL ALAP ++W YNW+  P    E V+ +    GVE++PM+WG   +E  +    E    + +LL FNEPNFG Q NLTP EAA +WP V+  A   G +IVSPA+N+CGG CN+ +P  W DEFF  C G   CRV  +AVH + C   +  LS ++ ++     +Y  P+WLTEF+C D
Sbjct:   74 DPPASSCKRGVAYGYHSAADLSALAPAVSWWYNWTVPPD---EGVRDSYQEIGVEFVPMLWGAASLEQMQ----EIPAGARYLLAFNEPNFGSQANLTPQEAAALWPQVEAVADAHGLEIVSPALNYCGGSCNKTNPFEWFDEFFAACQG---CRVDHLAVHWYACH--RDALSGYIEQMK----QYERPIWLTEFSCLD 257          
BLAST of mRNA_L-elsbetiae_contig10671.633.1 vs. uniprot
Match: A0A0K1E7A5_CHOCO (Glyco_hydro_cc domain-containing protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1E7A5_CHOCO)

HSP 1 Score: 171 bits (432), Expect = 7.090e-49
Identity = 91/205 (44.39%), Postives = 122/205 (59.51%), Query Frame = 1
Query:    1 PMEMEPTECRGKRGVAFDFKDANDLDALAPGMAWMYNWSPGIIAEDVKV-AQAASGVEYIPMIWGEKDMEADRLLHL--EALGESSHLLGFNEPNFGGQGNLTPAEAAEIWPTVKDEAGVLGADIVSPAVNFCGGDCNREDPILWLDEFFGKCGGAKNCRVTAIAVHSFT-CEVCKQLLSCWLNKILHGY-LKYGLPLWLTEFAC 600
            P   +PT C  KRGVA+ +    D+ AL+P ++W YNW+  +  E V+  A    GVEY+PM+WG   ++A R   +  E  G    LLGFNEPNFG Q NL+ +EAA +WP V+  A   G ++VSPAVN+CGG C   DP  +LD+FF  C G   CRV AI VH +T C+      + WL   +  Y  ++  P+WLTEFAC
Sbjct:   59 PPSSQPTGC--KRGVAYGYHSQADMLALSPAVSWWYNWTH-VPDEGVRPDAYTTIGVEYVPMVWGGGGLDAARATQIADEMPGGVRFLLGFNEPNFGEQANLSASEAAALWPHVEAIASARGLELVSPAVNYCGGSCQETDPFTYLDDFFAACAG---CRVDAIGVHIYTACQGDGTNKARWLIDQIERYKARFDQPIWLTEFAC 257          
BLAST of mRNA_L-elsbetiae_contig10671.633.1 vs. uniprot
Match: A0A1I2ARD7_9DELT (Glycosyl hydrolase catalytic core n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I2ARD7_9DELT)

HSP 1 Score: 170 bits (431), Expect = 9.750e-49
Identity = 86/192 (44.79%), Postives = 117/192 (60.94%), Query Frame = 1
Query:   34 KRGVAFDFKDANDLDALAPGMAWMYNWSPGIIAEDVKVAQ-AASGVEYIPMIWGEKDMEADRLLHLEALGESSHLLGFNEPNFGGQGNLTPAEAAEIWPTVKDEAGVLGADIVSPAVNFCGGDCNREDPILWLDEFFGKCGGAKNCRVTAIAVHSFTCEVCKQLLSCWLNKILHGYLKYGLPLWLTEFACAD 606
            KRG+A+ +    DL ALAPG++W YNW+   +  D  V    A  VE++PM+WG   ++ D  +   A     +LL FNEPNFG Q +LTP EAA +WP V+  A   G +IVSPA+N+CGGDCN+ DP  W DEFF  C G   CRV  +AVH + C   +  L+ ++ ++     KY  P+WLTEF+C D
Sbjct:   82 KRGIAYGYHSHADLAALAPGVSWWYNWA---VPPDPDVGDYQALNVEFVPMLWGGGSLDQDPPIPEGA----RYLLAFNEPNFGAQADLTPQEAAALWPQVEAVADAHGLEIVSPALNYCGGDCNKTDPFEWFDEFFAACPG---CRVDHLAVHWYACT--RDALTWYIGEMK----KYERPIWLTEFSCLD 257          
BLAST of mRNA_L-elsbetiae_contig10671.633.1 vs. uniprot
Match: A0A017T4U7_9DELT (Putative secreted protein n=2 Tax=Chondromyces apiculatus TaxID=51 RepID=A0A017T4U7_9DELT)

HSP 1 Score: 164 bits (416), Expect = 2.730e-46
Identity = 88/205 (42.93%), Postives = 118/205 (57.56%), Query Frame = 1
Query:    1 PMEMEPTECRGKRGVAFDFKDANDLDALAPGMAWMYNWSPGIIAEDVKV-AQAASGVEYIPMIWGEKDMEADRLLHL--EALGESSHLLGFNEPNFGGQGNLTPAEAAEIWPTVKDEAGVLGADIVSPAVNFCGGDCNREDPILWLDEFFGKCGGAKNCRVTAIAVHSFT-CEVCKQLLSCWLNKILHGY-LKYGLPLWLTEFAC 600
            P    PT C  KRGVA+ +    D+ AL+PG++W YNW+  +  E V+  A    GV+Y+PM+WG   ++  R   +  E       LLGFNEPNFG Q NL+ AEAA +WP V+  A   G  +VSPAVN+CGG C   DP  +LD+FF  C G   CRV  + VH +T C+      + WL   +  Y  ++  P+WLTEFAC
Sbjct:   77 PPSSHPTGC--KRGVAYGYHSTADMQALSPGVSWWYNWTH-VPDEGVRPDAYETLGVDYVPMVWGGDGLDGARAAQIADEIPDGVRFLLGFNEPNFGAQANLSAAEAAALWPHVEAIADARGLALVSPAVNYCGGACQETDPFTYLDDFFAACEG---CRVDYLGVHIYTACQGDGTNKAQWLINQIETYKTRFDKPIWLTEFAC 275          
BLAST of mRNA_L-elsbetiae_contig10671.633.1 vs. uniprot
Match: A0A4U1JJB9_9DELT (Glyco_hydro_cc domain-containing protein n=1 Tax=Polyangium fumosum TaxID=889272 RepID=A0A4U1JJB9_9DELT)

HSP 1 Score: 162 bits (410), Expect = 7.890e-46
Identity = 88/205 (42.93%), Postives = 119/205 (58.05%), Query Frame = 1
Query:    1 PMEMEPTECRGKRGVAFDFKDANDLDALAPGMAWMYNWSPGIIAEDVKV-AQAASGVEYIPMIWGEKDMEADRLLHL--EALGESSHLLGFNEPNFGGQGNLTPAEAAEIWPTVKDEAGVLGADIVSPAVNFCGGDCNREDPILWLDEFFGKCGGAKNCRVTAIAVHSFT-CEVCKQLLSCWLNKILHGY-LKYGLPLWLTEFAC 600
            P     T C  KRGVA+ +    D+ AL+P ++W YNW+  +  E VK       GVEY+PM+WG   ++++R   +  E     + LLGFNEPNFG Q N++ AEAA +WP V+  A   G  +VSPAVNFCGG C   DP  +LD+FF  C G   CRV +I +H +T C+      + WL   +  Y  ++  PLWLTEFAC
Sbjct:   37 PPITHSTGC--KRGVAYGYHSKADMAALSPAVSWWYNWAH-VPDEGVKPDVYKTLGVEYVPMVWGGGGLDSNRAAEIAAEIPDGVNFLLGFNEPNFGEQANMSAAEAAALWPHVEAVADARGLALVSPAVNFCGGSCQETDPFKYLDDFFAACEG---CRVDSIGIHIYTACQGDGTNKARWLINHIETYKTRFDKPLWLTEFAC 235          
BLAST of mRNA_L-elsbetiae_contig10671.633.1 vs. uniprot
Match: UPI001AEBE0E4 (glycoside hydrolase family protein n=1 Tax=Hymenobacter fodinae TaxID=2510796 RepID=UPI001AEBE0E4)

HSP 1 Score: 159 bits (403), Expect = 2.720e-45
Identity = 90/213 (42.25%), Postives = 119/213 (55.87%), Query Frame = 1
Query:    1 PMEMEPTECRGKRGVAFDFKDANDLDALAPGMAWMYNWSPGIIAEDVKVAQAASGVEYIPMIWGEKDME-----ADRLLHLEALGESSHLLGFNEPNFGGQGNLTPAEAAEIWPTVKDEAGVLGADIVSPAVNFCGGDCNRED------PILWLDEFFGKCGGAKNCRVTAIAVHSFTCEVCKQLLSCWLNKILHGYLKYGLPLWLTEFACAD 606
            P +        KRG+A+ +  A DL ALAPG++W YNW     A    V     GV+Y+PM WG +D++     ADRL      G + +LLGFNEPNF  Q NLTP +AA +WPT+++ A      +VSPAVN+CG DC  E+      P  +LD FF  C    +C+V  IAVH++ CE        WL   +    KYG P+WLTEF+C D
Sbjct:   27 PSQASAQTKSAKRGIAYGYHSAADLQALAPGISWWYNWYSKPEAGAASV-YTGLGVDYVPMQWG-RDLDGAPFTADRLAANIQAG-AKYLLGFNEPNFRSQANLTPTQAAALWPTLQEVARRKNLKLVSPAVNYCG-DCVSENGTTYYSPTQYLDAFFAAC---PSCQVDYIAVHTYVCE------EQWLRDKIGELKKYGKPIWLTEFSCGD 226          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10671.633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKU0_ECTSI2.010e-10070.79Putative serine rich protein n=2 Tax=Ectocarpus Ta... [more]
A0A6H5KQ88_9PHAE1.190e-7052.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG92_ECTSI2.400e-6953.88F5/8 type C domain protein n=1 Tax=Ectocarpus sili... [more]
A0A4U1JHY0_9DELT1.650e-5247.72Glyco_hydro_cc domain-containing protein n=2 Tax=P... [more]
UPI001CCFE65D1.230e-4944.00glycoside hydrolase family protein n=1 Tax=Nannocy... [more]
A0A0K1E7A5_CHOCO7.090e-4944.39Glyco_hydro_cc domain-containing protein n=1 Tax=C... [more]
A0A1I2ARD7_9DELT9.750e-4944.79Glycosyl hydrolase catalytic core n=1 Tax=Nannocys... [more]
A0A017T4U7_9DELT2.730e-4642.93Putative secreted protein n=2 Tax=Chondromyces api... [more]
A0A4U1JJB9_9DELT7.890e-4642.93Glyco_hydro_cc domain-containing protein n=1 Tax=P... [more]
UPI001AEBE0E42.720e-4542.25glycoside hydrolase family protein n=1 Tax=Hymenob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10671contigL-elsbetiae_contig10671:3001..5008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.1
Seed ortholog evalue7.7e-82
Seed eggNOG ortholog2880.D7FKU0
Preferred nameTOS1
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0003843,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005975,GO:0005976,GO:0006073,GO:0006074,GO:0006075,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009272,GO:0009277,GO:0009987,GO:0010383,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0030312,GO:0033692,GO:0034406,GO:0034407,GO:0034410,GO:0034411,GO:0034637,GO:0034645,GO:0035251,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0051273,GO:0051274,GO:0051278,GO:0070589,GO:0070592,GO:0070879,GO:0070880,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071944,GO:0071966,GO:0071969,GO:0071970,GO:1901576
EggNOG free text desc.Putative TOS1-like glycosyl hydrolase (DUF2401)
EggNOG OGs2CBPA@1,2QSI7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size606
Cds size603
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10671.633.1prot_L-elsbetiae_contig10671.633.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10671 3001..5005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815286.439278-CDS-L-elsbetiae_contig10671:3000..30751622815286.439278-CDS-L-elsbetiae_contig10671:3000..3075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10671 3001..3075 -
1691682817.7185404-CDS-L-elsbetiae_contig10671:3000..30751691682817.7185404-CDS-L-elsbetiae_contig10671:3000..3075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10671 3001..3075 -
1622815286.449045-CDS-L-elsbetiae_contig10671:3614..37341622815286.449045-CDS-L-elsbetiae_contig10671:3614..3734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10671 3615..3734 -
1691682817.7343762-CDS-L-elsbetiae_contig10671:3614..37341691682817.7343762-CDS-L-elsbetiae_contig10671:3614..3734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10671 3615..3734 -
1622815286.4620283-CDS-L-elsbetiae_contig10671:3974..40971622815286.4620283-CDS-L-elsbetiae_contig10671:3974..4097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10671 3975..4097 -
1691682817.7461622-CDS-L-elsbetiae_contig10671:3974..40971691682817.7461622-CDS-L-elsbetiae_contig10671:3974..4097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10671 3975..4097 -
1622815286.4710596-CDS-L-elsbetiae_contig10671:4313..44971622815286.4710596-CDS-L-elsbetiae_contig10671:4313..4497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10671 4314..4497 -
1691682817.7572517-CDS-L-elsbetiae_contig10671:4313..44971691682817.7572517-CDS-L-elsbetiae_contig10671:4313..4497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10671 4314..4497 -
1622815286.481531-CDS-L-elsbetiae_contig10671:4904..50051622815286.481531-CDS-L-elsbetiae_contig10671:4904..5005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10671 4905..5005 -
1691682817.7690246-CDS-L-elsbetiae_contig10671:4904..50051691682817.7690246-CDS-L-elsbetiae_contig10671:4904..5005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10671 4905..5005 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815286.4935517-UTR-L-elsbetiae_contig10671:5005..50081622815286.4935517-UTR-L-elsbetiae_contig10671:5005..5008Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10671 5006..5008 -
1691682817.778942-UTR-L-elsbetiae_contig10671:5005..50081691682817.778942-UTR-L-elsbetiae_contig10671:5005..5008Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10671 5006..5008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10671.633.1

>prot_L-elsbetiae_contig10671.633.1 ID=prot_L-elsbetiae_contig10671.633.1|Name=mRNA_L-elsbetiae_contig10671.633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=201bp
MEMEPTECRGKRGVAFDFKDANDLDALAPGMAWMYNWSPGIIAEDVKVAQ
AASGVEYIPMIWGEKDMEADRLLHLEALGESSHLLGFNEPNFGGQGNLTP
AEAAEIWPTVKDEAGVLGADIVSPAVNFCGGDCNREDPILWLDEFFGKCG
GAKNCRVTAIAVHSFTCEVCKQLLSCWLNKILHGYLKYGLPLWLTEFACA
D
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mRNA from alignment at L-elsbetiae_contig10671:3001..5008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10671.633.1 ID=mRNA_L-elsbetiae_contig10671.633.1|Name=mRNA_L-elsbetiae_contig10671.633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2008bp|location=Sequence derived from alignment at L-elsbetiae_contig10671:3001..5008- (Laminarionema elsbetiae ELsaHSoW15)
CCCATGGAGATGGAGCCGACGGAGTGCCGTGGCAAGAGGGGGGTGGCCTT TGACTTCAAGGATGCGAACGATCTAGACGCTCTGGCCCCCGGCATGGCTT GGATGTGAGGACGAACCCGTGGCTGACAGTATCTACCGCGTTTCCTGCGG CTGAGAGAGGATGAAGCGTTTTCGGAATTTTGTTTGACGTGCCTTGCTTC GCTTCTTCGATTTGCCGGTGAACGAAGCAGCGGGCTGGGTGTGTCCAGGG GGGGCCGGTTGAGTGTGTTCGTGCAGCACGCACGCACGCACTTACGACGG CATACTTTTTTGCGTGGTGCTTTTTTTTTCTTCTCAGGAGTGTAGGCAGA GGTAGGTCTCCGTCCTGGCGCCCAGAGGCCGTGGGGACGTTGGGTTGCAA AACGTGAAGAGAGGGTTTGAGGTTACACGATGAGAAGCGCGAGCAAAAAC ACCGGTAGATCAATCGGTCAAGCGACGTCCGTCCCCGCGTCGTTCTCTTG TTTGGTTCCAGGTACAACTGGAGCCCTGGTATCATTGCGGAGGACGTGAA GGTCGCGCAAGCTGCGTCTGGGGTCGAGTACATTCCCATGATTTGGGGAG AGAAAGACATGGAGGCTGATCGCTTGCTGCACTTGGAAGCACTCGGCGAG TCTTCGCACTTGCTCGGTTTCAACGAGCCCAACTTTGGCGGGCAGGTATG TGTTTAGGCGCTAAAAGCAGACAACAACAGTGCTTGCTCCTCTTGGCCGA GGCCCACCCGCCAGGATGACGTCATCACAGCACTCGCTATTTAGACGTGT CCTGCCACAAGGCCCAGAGCTCCACGGAAGTTATTCGACCGCTGTTGTTG CCTGCCGTGCTCTCACCACTGAATCGTGTCCGCGTGCAATACCACGCGTC TGTTGACACAGGGCAACCTGACCCCAGCGGAGGCTGCGGAGATTTGGCCG ACGGTGAAGGATGAGGCCGGCGTCCTTGGTGCGGATATCGTGTCGCCCGC GGTCAACTTTTGCGGAGGAGACTGCAACCGGGAGGTAGGACAAAGAGGAT GCAAGAGACAGTAGCAGCGCGTGCTAGTGTCTCCTCCTGAAGGCTCCGCG CCAAGAGCGCGGTGCATTTTTGGCAGGCAAAACGAAAAAAAGGAATGCTC ATGCTTTCTGCGACTATTCACTCCTTTCTTTCAGATGCCGCTCAAAGCTA ACTCTCTTGCCGCTTGCCGAATTAATCCACGTGGGGGGGGATACGTGGCG TCATGACACGACACGGCACCGCAGGACCCGATCCTATGGCTGGACGAATT TTTTGGGAAATGCGGAGGCGCCAAGAACTGCAGAGTGACTGCCATCGCGG TGCACTCCTTCACGTGTGAGGTATGTAAGCAACTGCTTTCGTGCGTGTTG AATGGTTTGTTGCGTTTCAGGGCCGAAGGCGGGTGTGCGTTTGTCGCGGC GAAAGAAGCATTATCCTTACTCAAAAATGCCATGCCATACATATGATTAG CGCCTTGGTCGCACTACCGGTCGCCCCGGTAGTCTAGTCTAGTTTCGTAA TCCTTCCAGCCGTCAGGTCGTGGGTTCGGATCTCGGCGTGAGCGGGCTAT TCCTTGCAAAAGTGTTTTTTTCTCTCGCTTTCGTTCCTGGCAGTGGAAAA AGGGGTAATCACATGCAGGTTCATGTGTACACATGAGAGAGGAGGCTGCC GAACTCTTCTCGCCCTAAAAATCGAAGGGAAGCACCGCATAGGGGCGGGT GTAGGGGCCCCAGGGACGGGGGGGGGGGGTCCTTCTGTTATGTGGCCACG GATCAGAGCTCTGGCACGATGCGCCTCGAGGGCTGATCTTTTGTCGAGCT GGCTCTCCCTGACCAAGCGCGCCTCCTGTCTTTCGCGTTCGCGTTCGCGT TCGCGTTCGCTGCTGTGGGGAACCCAGATCAAGTGGCTCAACAAGATCCT TCACGGCTACCTGAAGTATGGTCTCCCGCTGTGGTTGACCGAATTTGCCT GCGCGGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10671:3001..5008-

>mRNA_L-elsbetiae_contig10671.633.1 ID=mRNA_L-elsbetiae_contig10671.633.1|Name=mRNA_L-elsbetiae_contig10671.633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig10671:3001..5008- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGATGGAGCCGACGGAGTGCCGTGGCAAGAGGGGGGTGGCCTTTGA
CTTCAAGGATGCGAACGATCTAGACGCTCTGGCCCCCGGCATGGCTTGGA
TATGGAGATGGAGCCGACGGAGTGCCGTGGCAAGAGGGGGGTGGCCTTTG
ACTTCAAGGATGCGAACGATCTAGACGCTCTGGCCCCCGGCATGGCTTGG
ATGTACAACTGGAGCCCTGGTATCATTGCGGAGGACGTGAAGGTCGCGCA
AGCTGCGTCTGGGGTCGAGTACATTCCCATGATTTGGGGAGAGAAAGACA
TGGAGGCTGATCGCTTGCTGCACTTGGAAGCACTCGGCGAGTCTTCGCAC
TTGCTCGGTTTCAACGAGCCCAACTTTGGCGGGCAGGTACAACTGGAGCC
CTGGTATCATTGCGGAGGACGTGAAGGTCGCGCAAGCTGCGTCTGGGGTC
GAGTACATTCCCATGATTTGGGGAGAGAAAGACATGGAGGCTGATCGCTT
GCTGCACTTGGAAGCACTCGGCGAGTCTTCGCACTTGCTCGGTTTCAACG
AGCCCAACTTTGGCGGGCAGGGCAACCTGACCCCAGCGGAGGCTGCGGAG
ATTTGGCCGACGGTGAAGGATGAGGCCGGCGTCCTTGGTGCGGATATCGT
GTCGCCCGCGGTCAACTTTTGCGGAGGAGACTGCAACCGGGAGGGCAACC
TGACCCCAGCGGAGGCTGCGGAGATTTGGCCGACGGTGAAGGATGAGGCC
GGCGTCCTTGGTGCGGATATCGTGTCGCCCGCGGTCAACTTTTGCGGAGG
AGACTGCAACCGGGAGGACCCGATCCTATGGCTGGACGAATTTTTTGGGA
AATGCGGAGGCGCCAAGAACTGCAGAGTGACTGCCATCGCGGTGCACTCC
TTCACGTGTGAGGTATGTAAGCAACTGCTTTCGTGCGACCCGATCCTATG
GCTGGACGAATTTTTTGGGAAATGCGGAGGCGCCAAGAACTGCAGAGTGA
CTGCCATCGCGGTGCACTCCTTCACGTGTGAGGTATGTAAGCAACTGCTT
TCGTGCTGGCTCAACAAGATCCTTCACGGCTACCTGAAGTATGGTCTCCC
GCTGTGGTTGACCGAATTTGCCTGCGCGGATTGGCTCAACAAGATCCTTC
ACGGCTACCTGAAGTATGGTCTCCCGCTGTGGTTGACCGAATTTGCCTGC
GCGGAT
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