mRNA_L-elsbetiae_contig10664.629.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10664.629.1
Unique NamemRNA_L-elsbetiae_contig10664.629.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10664.629.1 vs. uniprot
Match: D7FS71_ECTSI (Possible kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS71_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 8.360e-46
Identity = 86/134 (64.18%), Postives = 98/134 (73.13%), Query Frame = 2 
Query:   17 MPALISFTKVRLENLPVPAVGPGTGTPGVFRVKFRAGT---AAAETLPRQGNPDGSVEWSEPLEMIVHDTSFRLVAVVSQENSSGGWSLVPGGRFEGALVPELPEDWRGAPKAPTDPAFYARLSVEMEHGTQRD 409
            MPA+I   KVR+ENLP  A     GTPG+FRVKFRAGT   + AET+P+  NPDGSVEW E L++ VHDTSF L+AVV Q N  GGWSLVP GRFEGA V ELP +WR A   PT P FYA+LSV +E GTQRD
Sbjct:    1 MPAIIFINKVRVENLPPAA----QGTPGLFRVKFRAGTEGRSPAETVPKPANPDGSVEWLETLDITVHDTSFPLIAVVQQTNYLGGWSLVPDGRFEGAAVSELPNEWRHASSIPTAPTFYAQLSVHVEGGTQRD 130
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BLAST of mRNA_L-elsbetiae_contig10664.629.1 vs. uniprot
Match: A0A6H5JRM4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRM4_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 1.360e-44
Identity = 84/134 (62.69%), Postives = 99/134 (73.88%), Query Frame = 2 
Query:   17 MPALISFTKVRLENLPVPAVGPGTGTPGVFRVKFRAGT---AAAETLPRQGNPDGSVEWSEPLEMIVHDTSFRLVAVVSQENSSGGWSLVPGGRFEGALVPELPEDWRGAPKAPTDPAFYARLSVEMEHGTQRD 409
            MPA+I  TKVR+ENLP  A     GTPG+FRVKFRAG+   A AET+P+  +PDGSVEW E L++ V+DTSF L+AVV Q N  GGWSLVP GRFEGA V ELP +WR A   PT P FYA+LSV +E GTQR+
Sbjct:    1 MPAVIFITKVRVENLPATA----QGTPGLFRVKFRAGSEGRAPAETVPKPADPDGSVEWLEALDITVYDTSFPLIAVVQQTNYLGGWSLVPDGRFEGAAVSELPNEWRHASSIPTAPTFYAQLSVHVEEGTQRN 130
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10664.629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS71_ECTSI8.360e-4664.18Possible kinase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JRM4_9PHAE1.360e-4462.69Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10664contigL-elsbetiae_contig10664:5084..6642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size413
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815286.0025759-CDS-L-elsbetiae_contig10664:5083..51261622815286.0025759-CDS-L-elsbetiae_contig10664:5083..5126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10664 5084..5126 +
1691682817.4487264-CDS-L-elsbetiae_contig10664:5083..51261691682817.4487264-CDS-L-elsbetiae_contig10664:5083..5126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10664 5084..5126 +
1622815286.0143642-CDS-L-elsbetiae_contig10664:6272..66401622815286.0143642-CDS-L-elsbetiae_contig10664:6272..6640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10664 6273..6640 +
1691682817.456883-CDS-L-elsbetiae_contig10664:6272..66401691682817.456883-CDS-L-elsbetiae_contig10664:6272..6640Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10664 6273..6640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10664.629.1prot_L-elsbetiae_contig10664.629.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10664 5084..6640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10664.629.1

>prot_L-elsbetiae_contig10664.629.1 ID=prot_L-elsbetiae_contig10664.629.1|Name=mRNA_L-elsbetiae_contig10664.629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
GCTTKDACPHLIHQGAAGEPTGTGGWTGDRDAGRLPRQVPCGHRGGGDAT
QTGEPRWLGRMVGAAGDDRARHELPAGGRGQPGELLRGVEPRPRWSFRGG
ACPGAARGLARRSQGPHRPRVLRPAERRDGARHAARH
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mRNA from alignment at L-elsbetiae_contig10664:5084..6642+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10664.629.1 ID=mRNA_L-elsbetiae_contig10664.629.1|Name=mRNA_L-elsbetiae_contig10664.629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1559bp|location=Sequence derived from alignment at L-elsbetiae_contig10664:5084..6642+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTGCACCACCAAGGATGCCTGCCCTCATCTCATTCACCAAGGTGCGAA
CAAGGATACCGATTGAGAAGACTAAGACTGGCATTGGAGTGGCGGAACTC
GGTAATCTTATGAACATACAATGTCACGACAGGGTGACCTACTGCTGACT
ATGTATGTACACAATACAGCCCTCAGATGTTGCTCCGCCGTTCATGCCGG
TCACACACTCCTACGTTCTACATGCTTATGAACTCTCGGCGGAGCATTTC
TTCACTCCCGCTCGATTGCTGAACAGATCCATAGGCGAAGAGAGGACCAA
AAGTATTTCGTTGGTCAGACTTGCGTGCGAGCCGCGGAAGCCCTGTAGCC
TCCAGCAAATCTCGTTGAGACTATTTTTGAGACAAAAAACCGCGGTGCTA
TTACCGTAGGTGACACAAGATACCACACCCCCTGGGCAGATTTTTAAAGC
TCGATTCCTGCCCCGCAAGAAGAGTGCCAATGCCAAAAAGGGTGGCGTTG
GAAATATCTAGTCAAGGGCTGTCCGAAAATGTGTCGTTTGATGCTGGCAC
CTTCTTCGTTACGGGGTAATCGAGCTCTAAAATTCGGTCCAGGGGGTGTG
GTATCTTGTGTCATCTACGGTATATTATCTACTCTATCGTCATATAAGTA
GACTACGTACAATACACGGGTCATAATATACCCATCAAAAACATATACTA
GTACATAGGTATACCCGCGTACATCGTGCAGAGTTCAAAGACATCAACGG
AGATTTTTTACGGCAGGTGCGAAAGAACGCCTCTGTGCTGTTCTTGAACA
AAGGATTGCAGAAAATACCAAAAATACTGAAGTGTGATGTGTCACACATA
CAAAGATCATGGGTGGAGGAAGGAGGGCCGTGAACACCTCAGGTGTTCCC
TATTAGTCGACTTACACGTGTTGGTCTCTCTCGTCGGTGCCTCCTCTACT
CGGTCGCTCGCCCGCCCCTTTATCCTAATTTCGTGTGAAAACTCTGAAGC
CTGCTACTACTGTGTATGTAGCGGTGCTTTCCGCTCGCGCTCGCCATGTT
GCGGCTTGGCCTTGGCCTCGCCCCACCAAGAAGGCGGCTGGCCCATCCAG
GACGTGAGTTTCGTGCCGAATCCTACATACCAACCCCCCTGCCAATCTCC
GTCGATCTCGCCCCTTTCCCGTTTACGGCCCATTCCCAGGTGCGGCTGGA
GAACCTACCGGTACCGGCGGTTGGACCGGGGACAGGGACGCCGGGCGTCT
TCCGCGTCAAGTTCCGTGCGGGCACCGCGGCGGCGGAGACGCTACCCAGA
CAGGGGAACCCCGATGGCTCGGTCGAATGGTCGGAGCCGCTGGAGATGAT
CGTGCACGACACGAGCTTCCGGCTGGTGGCCGTGGTCAGCCAGGAGAACT
CCTCCGGGGGGTGGAGCCTCGTCCCCGGTGGTCGTTTCGAGGGGGCGCTT
GTCCCGGAGCTGCCCGAGGACTGGCGCGGCGCTCCCAAGGCCCCCACCGA
CCCCGCGTTCTACGCCCGGCTGAGCGTCGAGATGGAGCACGGCACGCAGC
GCGACACCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10664:5084..6642+

>mRNA_L-elsbetiae_contig10664.629.1 ID=mRNA_L-elsbetiae_contig10664.629.1|Name=mRNA_L-elsbetiae_contig10664.629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig10664:5084..6642+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTGCACCACCAAGGATGCCTGCCCTCATCTCATTCACCAAGGGGTGCA
CCACCAAGGATGCCTGCCCTCATCTCATTCACCAAGGTGCGGCTGGAGAA
CCTACCGGTACCGGCGGTTGGACCGGGGACAGGGACGCCGGGCGTCTTCC
GCGTCAAGTTCCGTGCGGGCACCGCGGCGGCGGAGACGCTACCCAGACAG
GGGAACCCCGATGGCTCGGTCGAATGGTCGGAGCCGCTGGAGATGATCGT
GCACGACACGAGCTTCCGGCTGGTGGCCGTGGTCAGCCAGGAGAACTCCT
CCGGGGGGTGGAGCCTCGTCCCCGGTGGTCGTTTCGAGGGGGCGCTTGTC
CCGGAGCTGCCCGAGGACTGGCGCGGCGCTCCCAAGGCCCCCACCGACCC
CGCGTTCTACGCCCGGCTGAGCGTCGAGATGGAGCACGGCACGCAGCGCG
ACACGTGCGGCTGGAGAACCTACCGGTACCGGCGGTTGGACCGGGGACAG
GGACGCCGGGCGTCTTCCGCGTCAAGTTCCGTGCGGGCACCGCGGCGGCG
GAGACGCTACCCAGACAGGGGAACCCCGATGGCTCGGTCGAATGGTCGGA
GCCGCTGGAGATGATCGTGCACGACACGAGCTTCCGGCTGGTGGCCGTGG
TCAGCCAGGAGAACTCCTCCGGGGGGTGGAGCCTCGTCCCCGGTGGTCGT
TTCGAGGGGGCGCTTGTCCCGGAGCTGCCCGAGGACTGGCGCGGCGCTCC
CAAGGCCCCCACCGACCCCGCGTTCTACGCCCGGCTGAGCGTCGAGATGG
AGCACGGCACGCAGCGCGACAC
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