mRNA_L-elsbetiae_contig10662.627.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10662.627.1
Unique NamemRNA_L-elsbetiae_contig10662.627.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10662.627.1 vs. uniprot
Match: A0A6H5KLG4_9PHAE (Rieske domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG4_9PHAE)

HSP 1 Score: 298 bits (763), Expect = 3.640e-93
Identity = 146/178 (82.02%), Postives = 155/178 (87.08%), Query Frame = 1
Query:    4 RVPNLWLAVAHSSSVRAGEVKKVEVDGVPIALWRTAMGAVSAQSDVCIHRGASLARGWVANDRLVCPYHGFEFESSGRLAHMPGAGPPKXXXXXXXXXXXXXXPAAAN-AKACGGRKAPTYPVKEIGGWIYIFPDETRPGSVEQHLDPVVIPEAVSPEFRVVEGSMDFKGGVDASVEN 534
            RVPNLWLAVAHSS V+AGEVKKVEVDGVPIALWRT+ G+VSAQSDVCIHRGASLARGW+ANDRLVCPYHGFEFES+GRLAHMPGAG PK                AA+ AKACGGRKAPTYPVKE  GWIYIFPDETRPGSVEQHLDPVVIPEAVSP+FR ++GSMDFKGGVDASVEN
Sbjct:  239 RVPNLWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIANDRLVCPYHGFEFESNGRLAHMPGAGRPKGSAAVARAAGRPATADAADKAKACGGRKAPTYPVKESAGWIYIFPDETRPGSVEQHLDPVVIPEAVSPQFRCIQGSMDFKGGVDASVEN 416          
BLAST of mRNA_L-elsbetiae_contig10662.627.1 vs. uniprot
Match: A0A836CFS0_9STRA (Rieske domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFS0_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.670e-49
Identity = 89/178 (50.00%), Postives = 110/178 (61.80%), Query Frame = 1
Query:    7 VPNLWLAVAHSSSVRAGEVKKVEVDGVPIALWRTAMGAVSAQSDVCIHRGASLARGWVANDRLVCPYHGFEFESSGRLAHMPGAGPPKXXXXXXXXXXXXXXPAAANAKACGG--RKAPTYPVKEIGGWIYIFPDETRPGSVEQHLDPVVIPEAVSPEFRVVEGSMDFKGGVDASVEN 534
            VPNLWLAV H SS++  +V KV VDG PIA+WRT+ G + A SD+CIHRGASLA+GW+  DRLVCPYHGFEF+  G L +MPG                         + C G  RK   Y V+E  GWIY+FPD  RPG++EQ+ +P  I EA  P FR VEGS++  G   A +EN
Sbjct:  153 VPNLWLAVGHMSSLKGKKVLKVTVDGKPIAIWRTSTGELKAISDICIHRGASLAKGWLHQDRLVCPYHGFEFDGHGTLQYMPGV-----------------TKEGVTKQGCSGSGRKTQAYLVREKNGWIYLFPDAARPGAIEQYSEPFTIAEASDPRFRYVEGSVEIGGDAAACMEN 313          
BLAST of mRNA_L-elsbetiae_contig10662.627.1 vs. uniprot
Match: A0A4D9DEC4_9STRA (Rieske domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEC4_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.530e-38
Identity = 76/177 (42.94%), Postives = 103/177 (58.19%), Query Frame = 1
Query:    4 RVPNLWLAVAHSSSVRAGEVKKVEVDGVPIALWRTAMGAVSAQSDVCIHRGASLARGWVANDRLVCPYHGFEFESSGRLAHMPGAGPPKXXXXXXXXXXXXXXPAAANAKACGGRKAPTYPVKEIGGWIYIFPDETRPGSVEQHLDPVVIPEAVSPEFRVVEGSMDFKGGVDASVEN 534
            +VPN WLAV HSSS++  E+KK+ VD  PI L+R A G V A SD+C+HR A+L+ GW+  D +VCPYH ++F+  G+L ++PG                     A N +     +   Y   E GG IY+FPD  R G++EQH+ P +IPE V P FRVVEG  + K   +  VEN
Sbjct:  264 KVPNTWLAVCHSSSLKKKELKKIWVDDKPICLFRAASGEVKAISDICLHRAAALSDGWLDGDLVVCPYHAYKFDGEGKLRYIPGV---------------DEGMLAKNKRTA---RTVWYKTLEQGGLIYLFPDAMRAGAIEQHVKPFLIPEEVDPSFRVVEGVTEIKASANLVVEN 422          
BLAST of mRNA_L-elsbetiae_contig10662.627.1 vs. uniprot
Match: A0A6U4DAF0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DAF0_9STRA)

HSP 1 Score: 135 bits (340), Expect = 8.160e-34
Identity = 74/180 (41.11%), Postives = 98/180 (54.44%), Query Frame = 1
Query:   16 LWLAVAHSSSVRAGEVKKVEVDGVPIALWRTAMGAVSAQSDVCIHRGASLARGWVANDRLV-CPYHGFEFESSGRLAHMPGA-GPPKXXXXXXXXXXXXXXPAAANAKACGGRKAPTYPVKEIGGWIYIFPDETRPGSVEQH-----LDPVVIPEAVSPEFRVVEGSMDFKGGVDASVEN 534
            +WL VAHS+ V   + K +E+DG+PI +WR   G +SA SDVCIHRGASLA+GWV+    V CPYHGFE+E  G L       G  +              P              +YPV+E GGWI +FP  T     + H     L+P+  PE  +P FR ++GS+D  G VDA++EN
Sbjct:  238 VWLTVAHSADVPKMKTKLIEIDGIPIVVWRDQSGRLSALSDVCIHRGASLAKGWVSKSGCVACPYHGFEYEHDGALVRTANVMGRDEHETEQEAIDRIGRIPGDPPQTV-------SYPVREAGGWIQVFPRSTVEAFGQLHAPETVLEPLHYPELSTPGFRAIQGSVDINGSVDATMEN 410          
BLAST of mRNA_L-elsbetiae_contig10662.627.1 vs. uniprot
Match: D8LGX3_ECTSI (Rieske (2Fe-2S) domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGX3_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.150e-32
Identity = 61/67 (91.04%), Postives = 65/67 (97.01%), Query Frame = 1
Query:    4 RVPNLWLAVAHSSSVRAGEVKKVEVDGVPIALWRTAMGAVSAQSDVCIHRGASLARGWVANDRLVCP 204
            RVPNLWLAVAHSS V+AGEVKKVEVDGVPIALWRT+ G+VSAQSDVCIHRGASLARGW+ANDRLVCP
Sbjct:  173 RVPNLWLAVAHSSDVKAGEVKKVEVDGVPIALWRTSTGSVSAQSDVCIHRGASLARGWIANDRLVCP 239          
BLAST of mRNA_L-elsbetiae_contig10662.627.1 vs. uniprot
Match: A0A7R9YDM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDM5_9STRA)

HSP 1 Score: 115 bits (288), Expect = 7.700e-28
Identity = 66/153 (43.14%), Postives = 78/153 (50.98%), Query Frame = 1
Query:   16 LWLAVAHSSSVRAGEVKKVEVDGVPIALWRTAMGAVSAQSDVCIHRGASLARGWVA-NDRLVCPYHGFEFESSGRLAHMPGAGPPKXXXXXXXXXXXXXXPAAANAKACGGRKAPTYPVKEIGGWIYIFPDETRPGSVEQH-----LDPVVIP 456
            LW++VAHSSSV     KKV V  +PI LWR A   +SA SDVCIHRGASLA+GWVA N  + CPYHGFEF+S G L   PG                   P   +           YPV+E  GWI +FP  +       H     LDP+  P
Sbjct:  187 LWMSVAHSSSVPRMTAKKVTVGDIPIVLWRDASDRLSALSDVCIHRGASLAKGWVAENGCITCPYHGFEFQSDGALLRTPGVVGATEDGEGSPTSSKTQPPTTIS-----------YPVRESDGWIQVFPRSSTEAFANLHVPEMVLDPLAYP 328          
BLAST of mRNA_L-elsbetiae_contig10662.627.1 vs. uniprot
Match: A0A7V6CC77_9GAMM (Aromatic ring-hydroxylating dioxygenase subunit alpha (Fragment) n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7V6CC77_9GAMM)

HSP 1 Score: 90.1 bits (222), Expect = 4.430e-20
Identity = 47/139 (33.81%), Postives = 69/139 (49.64%), Query Frame = 1
Query:   13 NLWLAVAHSSSVRAGEVKKVEVDGVPIALWRTAMGAVSAQSDVCIHRGASLARGWVANDRLVCPYHGFEFESSGRLAHMPGAGPPKXXXXXXXXXXXXXXPAAANAKACGGRKAPTYPVKEIGGWIYIF----PDETRP 417
            N W  +A ++ V   +  +VE+ G+P  ++R   G     +D C+HRG SL+ GWV   R VCPYHG+EF+ SGR  H+P                     + A+ K     K  +YPV+E  G ++ F    P+E RP
Sbjct:    4 NFWYPIARATDVTDSKPIRVELLGLPFVVFRDEQGDAHVLADTCVHRGGSLSAGWVRGGRAVCPYHGWEFDGSGRCVHIP---------------------SLADQKPPARAKVDSYPVQEKYGIVFAFLGDLPEEQRP 121          
BLAST of mRNA_L-elsbetiae_contig10662.627.1 vs. uniprot
Match: A0A7C4GWJ4_9CREN (Aromatic ring-hydroxylating dioxygenase subunit alpha n=2 Tax=Acidilobales archaeon TaxID=2268176 RepID=A0A7C4GWJ4_9CREN)

HSP 1 Score: 92.4 bits (228), Expect = 3.500e-19
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   13 NLWLAVAHSSSVRAGEVKKVEVDGVPIALWRTAMGAVSAQSDVCIHRGASLARGWVANDRLVCPYHGFEFESSGRLAHMP 252
            N W  VA SS +  G + +  V G  + +WR+  GAV A  D+CIHRGA L+ GWV++D+LVCPYHG+E+++SGR   +P
Sbjct:    9 NDWFVVARSSDLPVGGILRARVLGEDLVVWRSRSGAVMAWQDLCIHRGARLSLGWVSDDKLVCPYHGWEYDTSGRCVRIP 88          
BLAST of mRNA_L-elsbetiae_contig10662.627.1 vs. uniprot
Match: A0A2R4ZML2_9CREN (Ring-hydroxylating dioxygenase n=1 Tax=Desulfurococcaceae archaeon AG1 TaxID=2027460 RepID=A0A2R4ZML2_9CREN)

HSP 1 Score: 90.1 bits (222), Expect = 2.490e-18
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   13 NLWLAVAHSSSVRAGEVKKVEVDGVPIALWRTAMGAVSAQSDVCIHRGASLARGWVANDRLVCPYHGFEFESSGRLAHMP 252
            N W  VA SS +  G V +  + G  I LWR++ G++ A  D+CIHRGA L+ GWV+NDRLVCPYHG+E++ +G    +P
Sbjct:    8 NDWHVVARSSDLPVGRVLRARLLGEDIVLWRSSSGSIMAWQDLCIHRGARLSLGWVSNDRLVCPYHGWEYDVNGVCVRIP 87          
BLAST of mRNA_L-elsbetiae_contig10662.627.1 vs. uniprot
Match: A0A1Z4R413_9CYAN (Rieske (2Fe-2S) iron-sulfur domain protein n=1 Tax=Calothrix sp. NIES-4101 TaxID=2005461 RepID=A0A1Z4R413_9CYAN)

HSP 1 Score: 88.2 bits (217), Expect = 1.330e-17
Identity = 60/176 (34.09%), Postives = 82/176 (46.59%), Query Frame = 1
Query:   19 WLAVAHSSSVRAGEVKKVEVDGVPIALWRTAMGAVSAQSDVCIHRGASLARGWVANDRLVCPYHGFEFESSGRLAHMPG---AGPPKXXXXXXXXXXXXXXPAAANAKACGGRKAPTYPVKEIGGWIYIFPDETRPGSVEQHLDPVVIPEAVSPEF-RVVEGSMDFKGGVDASVEN 534
            W  VA S  +  G++ KV + G  + LWR       A  D C HRGASLARGWV ND LVCPYHG  F   G+ +H+P    A PPK                   +KAC      TY ++E  G I++       G+ EQ + P   PE  +P + +   G   ++     ++EN
Sbjct:   11 WHVVASSQDLLPGKILKVRLLGQDVVLWRNINNEAVAWEDRCPHRGASLARGWVENDALVCPYHGLAFNGEGKCSHIPAHPEAAPPK------------------KSKAC----VTTYNLQERYGMIWVCL-----GTPEQDIAP--FPEWDTPNYHKYFFGPTMYQSSAGRALEN 157          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10662.627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLG4_9PHAE3.640e-9382.02Rieske domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A836CFS0_9STRA1.670e-4950.00Rieske domain-containing protein n=1 Tax=Tribonema... [more]
A0A4D9DEC4_9STRA1.530e-3842.94Rieske domain-containing protein n=3 Tax=Monodopsi... [more]
A0A6U4DAF0_9STRA8.160e-3441.11Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
D8LGX3_ECTSI1.150e-3291.04Rieske (2Fe-2S) domain protein n=1 Tax=Ectocarpus ... [more]
A0A7R9YDM5_9STRA7.700e-2843.14Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7V6CC77_9GAMM4.430e-2033.81Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A7C4GWJ4_9CREN3.500e-1948.75Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A2R4ZML2_9CREN2.490e-1848.75Ring-hydroxylating dioxygenase n=1 Tax=Desulfuroco... [more]
A0A1Z4R413_9CYAN1.330e-1734.09Rieske (2Fe-2S) iron-sulfur domain protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10662contigL-elsbetiae_contig10662:5710..6633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score87.8
Seed ortholog evalue5.5e-15
Seed eggNOG ortholog32051.SynWH7803_2265
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rieske 2Fe-2S domain
EggNOG OGs1G22J@1117,1GZT3@1129,COG4638@1,COG4638@2
COG Functional cat.P
Best tax levelSynechococcus
Best eggNOG OGNA|NA|NA
Exons2
Model size534
Cds size534
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815285.8593578-CDS-L-elsbetiae_contig10662:5709..59141622815285.8593578-CDS-L-elsbetiae_contig10662:5709..5914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10662 5710..5914 +
1691682817.3662188-CDS-L-elsbetiae_contig10662:5709..59141691682817.3662188-CDS-L-elsbetiae_contig10662:5709..5914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10662 5710..5914 +
1622815285.870114-CDS-L-elsbetiae_contig10662:6304..66331622815285.870114-CDS-L-elsbetiae_contig10662:6304..6633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10662 6305..6633 +
1691682817.3791761-CDS-L-elsbetiae_contig10662:6304..66331691682817.3791761-CDS-L-elsbetiae_contig10662:6304..6633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10662 6305..6633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10662.627.1prot_L-elsbetiae_contig10662.627.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10662 5710..6633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10662.627.1

>prot_L-elsbetiae_contig10662.627.1 ID=prot_L-elsbetiae_contig10662.627.1|Name=mRNA_L-elsbetiae_contig10662.627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
MRVPNLWLAVAHSSSVRAGEVKKVEVDGVPIALWRTAMGAVSAQSDVCIH
RGASLARGWVANDRLVCPYHGFEFESSGRLAHMPGAGPPKSSAAAARAAA
AGGGPAAANAKACGGRKAPTYPVKEIGGWIYIFPDETRPGSVEQHLDPVV
IPEAVSPEFRVVEGSMDFKGGVDASVEN
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mRNA from alignment at L-elsbetiae_contig10662:5710..6633+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10662.627.1 ID=mRNA_L-elsbetiae_contig10662.627.1|Name=mRNA_L-elsbetiae_contig10662.627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig10662:5710..6633+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGTGCCGAACCTCTGGCTCGCCGTGGCGCACTCGTCCAGCGTCAG GGCCGGGGAGGTGAAGAAGGTGGAGGTCGACGGGGTGCCGATCGCGCTCT GGCGCACGGCCATGGGCGCCGTCAGCGCGCAGTCCGACGTGTGCATTCAC AGGGGGGCGAGTCTGGCTCGCGGGTGGGTCGCCAACGACCGCCTGGTTTG CCCATGTAAGTTGTTTTTTGTATCTTGATTTTGGTGCTTGGTTGTTTGCG CTTTGGGGACAAAATTATATCCTCGCGAGGTCTTCGCGGTACTCGCCGCA ACATGCGTGTATAGGTAGGTACCGCACGCCCATTGGCGCGTACTACATAC GCATTTGTCTGCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCC CACCCCCCCCCCCGGCTATATCATGAACCGTCACACTTCGTCAAACCAAC CTCTAACTTCCATGAACATACCTCCCTTTCTTTGGCACCCCCCCCCCCCC CCCCCCCCCAAAAAAAAACCACCACCTGCACAACAACAAAAAAAGACCAC GGCTTCGAGTTCGAGAGCAGCGGGCGCCTGGCCCACATGCCTGGCGCCGG CCCCCCCAAGTCCAGCGCGGCGGCGGCAAGAGCAGCGGCGGCGGGCGGAG GACCGGCCGCCGCCAACGCGAAAGCCTGCGGCGGGCGCAAGGCCCCGACC TACCCGGTCAAGGAGATCGGCGGGTGGATCTACATCTTCCCAGACGAGAC CCGGCCCGGCTCCGTGGAGCAGCACCTCGACCCGGTCGTTATCCCGGAGG CCGTTTCCCCGGAGTTCAGGGTCGTGGAGGGGTCCATGGACTTCAAAGGA GGGGTGGACGCGAGCGTGGAGAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10662:5710..6633+

>mRNA_L-elsbetiae_contig10662.627.1 ID=mRNA_L-elsbetiae_contig10662.627.1|Name=mRNA_L-elsbetiae_contig10662.627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1068bp|location=Sequence derived from alignment at L-elsbetiae_contig10662:5710..6633+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGTGCCGAACCTCTGGCTCGCCGTGGCGCACTCGTCCAGCGTCAG
GGCCGGGGAGGTGAAGAAGGTGGAGGTCGACGGGGTGCCGATCGCGCTCT
GGCGCACGGCCATGGGCGCCGTCAGCGCGCAGTCCGACGTGTGCATTCAC
AGGGGGGCGAGTCTGGCTCGCGGGTGGGTCGCCAACGACCGCCTGGTTTG
CCCATATGCGGGTGCCGAACCTCTGGCTCGCCGTGGCGCACTCGTCCAGC
GTCAGGGCCGGGGAGGTGAAGAAGGTGGAGGTCGACGGGGTGCCGATCGC
GCTCTGGCGCACGGCCATGGGCGCCGTCAGCGCGCAGTCCGACGTGTGCA
TTCACAGGGGGGCGAGTCTGGCTCGCGGGTGGGTCGCCAACGACCGCCTG
GTTTGCCCATACCACGGCTTCGAGTTCGAGAGCAGCGGGCGCCTGGCCCA
CATGCCTGGCGCCGGCCCCCCCAAGTCCAGCGCGGCGGCGGCAAGAGCAG
CGGCGGCGGGCGGAGGACCGGCCGCCGCCAACGCGAAAGCCTGCGGCGGG
CGCAAGGCCCCGACCTACCCGGTCAAGGAGATCGGCGGGTGGATCTACAT
CTTCCCAGACGAGACCCGGCCCGGCTCCGTGGAGCAGCACCTCGACCCGG
TCGTTATCCCGGAGGCCGTTTCCCCGGAGTTCAGGGTCGTGGAGGGGTCC
ATGGACTTCAAAGGAGGGGTGGACGCGAGCGTGGAGAACACCACGGCTTC
GAGTTCGAGAGCAGCGGGCGCCTGGCCCACATGCCTGGCGCCGGCCCCCC
CAAGTCCAGCGCGGCGGCGGCAAGAGCAGCGGCGGCGGGCGGAGGACCGG
CCGCCGCCAACGCGAAAGCCTGCGGCGGGCGCAAGGCCCCGACCTACCCG
GTCAAGGAGATCGGCGGGTGGATCTACATCTTCCCAGACGAGACCCGGCC
CGGCTCCGTGGAGCAGCACCTCGACCCGGTCGTTATCCCGGAGGCCGTTT
CCCCGGAGTTCAGGGTCGTGGAGGGGTCCATGGACTTCAAAGGAGGGGTG
GACGCGAGCGTGGAGAAC
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