mRNA_L-elsbetiae_contig10658.625.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10658.625.1
Unique NamemRNA_L-elsbetiae_contig10658.625.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10658.625.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 3.710e-27
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:   73 KKTAAARITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNKFLSITGVFSFDLGWTLSAACL 276
            KKTAAARI  +LA LPLSKLKIVVVVWQISNAFAEVT VPFPPVY KFLSI G+FSFDLGW +SAACL
Sbjct:  941 KKTAAARIGEMLARLPLSKLKIVVVVWQISNAFAEVTKVPFPPVYEKFLSIIGIFSFDLGWMISAACL 1008
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BLAST of mRNA_L-elsbetiae_contig10658.625.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.970e-25
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:   82 AAARITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNKFLSITGVFSFDLGWTLSAACL 276
            AAARI  +LA LPLSKLKIV+VVWQISNAFAE+T VPFPPVY KFLSI G+FSFDLGW +SAACL
Sbjct: 1403 AAARIGEMLARLPLSKLKIVIVVWQISNAFAEITKVPFPPVYEKFLSIIGIFSFDLGWMISAACL 1467
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BLAST of mRNA_L-elsbetiae_contig10658.625.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 7.380e-25
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:   85 AARITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNKFLSITGVFSFDLGWTLSAACL 276
            AARI  +LA LPLSKLKIVVVVWQISNAFAE+T VPFPPVY KFLSI G+FSFDLGW +SAACL
Sbjct: 1294 AARIGEMLARLPLSKLKIVVVVWQISNAFAEITKVPFPPVYEKFLSIIGIFSFDLGWMISAACL 1357
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BLAST of mRNA_L-elsbetiae_contig10658.625.1 vs. uniprot
Match: D7G5M2_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M2_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 9.850e-25
Identity = 52/64 (81.25%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:   85 AARITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNKFLSITGVFSFDLGWTLSAACL 276
            AAR+  +LA LPLSKLKIVVVVWQISNAFAE+T VPFPPVY KFLSI G+FSFDLGW +SAACL
Sbjct:  677 AARVGEMLARLPLSKLKIVVVVWQISNAFAEITKVPFPPVYEKFLSIIGIFSFDLGWMMSAACL 740
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BLAST of mRNA_L-elsbetiae_contig10658.625.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.070e-22
Identity = 46/62 (74.19%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:   91 RITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNKFLSITGVFSFDLGWTLSAACL 276
            R+  +LAALPLSKLKIV+VVWQI++AFA++T  PFPP+Y KFLSI G+FSFDLGW LSAACL
Sbjct: 1251 RVANLLAALPLSKLKIVIVVWQITSAFADITKAPFPPIYEKFLSIIGIFSFDLGWILSAACL 1312
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BLAST of mRNA_L-elsbetiae_contig10658.625.1 vs. uniprot
Match: D7FXY9_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 4.790e-14
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:   91 RITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNKFLSITGVFSFDLGWTLSAACL 276
            R+  +LAALPLSKLKIV+          ++T  PFPP+Y KFLSI G+FSFDLGW LSAACL
Sbjct: 1068 RVANLLAALPLSKLKIVI----------DITKAPFPPIYEKFLSIIGIFSFDLGWILSAACL 1119
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BLAST of mRNA_L-elsbetiae_contig10658.625.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.670e-13
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   91 RITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNKFLSITGVFSFDLGWTLSAACL 276
            R+  +L ALPLSKLKIV+          ++T  PFPP+Y KFLSI G+FSFDLGW LSAACL
Sbjct: 1028 RVANLLTALPLSKLKIVI----------DITKAPFPPIYEKFLSIIGIFSFDLGWILSAACL 1079
[Close]
BLAST of mRNA_L-elsbetiae_contig10658.625.1 vs. uniprot
Match: A0A6H5JI42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI42_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.440e-12
Identity = 41/66 (62.12%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:   79 TAAARITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNKFLSITGVFSFDLGWTLSAACL 276
            TAA RI  +LA LPLSK            AFAE+T VPFPPVY KFLSI G FSF LGW +SAACL
Sbjct:  191 TAAVRIGEMLARLPLSKD-------CRRCAFAEITKVPFPPVYEKFLSIIGTFSFGLGWVISAACL 249
[Close]
BLAST of mRNA_L-elsbetiae_contig10658.625.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.170e-10
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:  109 AALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNKFLSITGVFSFDLGWTLSAACL 276
            A LP+ KLKI+VVVWQI + F  +T V FPP Y +FLS   + SFDLG  LSA+C+
Sbjct: 1104 ARLPMDKLKILVVVWQILSVFPSITAVDFPPAYARFLSWIDMLSFDLGHVLSASCV 1159
[Close]
BLAST of mRNA_L-elsbetiae_contig10658.625.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.400e-9
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:    7 VFAAGRKISSSPDQGSASQKSGKKTAAARITAVLAALPLSKLKIVVVVWQISNAFAEVTNVPFPPVYNKFLSITGVFSFDLGWTLSAACL 276
            +  AG ++S   D G  S ++G      RI   ++ LP+ KLKI+VVVWQI   F  +T V FPP Y++FLS   V + D+G   +A+CL
Sbjct:  759 ILEAGARMS---DAGGESARTGCCGLGGRIKRWVSLLPMDKLKILVVVWQILTVFPSITGVQFPPSYSRFLSWIDVVNLDVGHVFTASCL 845
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10658.625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G0A8_ECTSI3.710e-2785.29Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JRA9_9PHAE3.970e-2581.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0B0_ECTSI7.380e-2582.81Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G5M2_ECTSI9.850e-2581.25Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5K4A5_9PHAE1.070e-2274.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXY9_ECTSI4.790e-1461.29Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G119_ECTSI1.670e-1359.68Asn/thr-rich large protein family protein n=1 Tax=... [more]
A0A6H5JI42_9PHAE1.440e-1262.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH4_ECTSI2.170e-1057.14Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH1_ECTSI1.400e-941.11Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10658contigL-elsbetiae_contig10658:734..1718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue4.4e-08
Seed eggNOG ortholog2880.D8LHQ8
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size277
Cds size276
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10658.625.1prot_L-elsbetiae_contig10658.625.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10658 734..1718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815285.7320533-CDS-L-elsbetiae_contig10658:733..8781622815285.7320533-CDS-L-elsbetiae_contig10658:733..878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10658 734..878 +
1691682817.298253-CDS-L-elsbetiae_contig10658:733..8781691682817.298253-CDS-L-elsbetiae_contig10658:733..878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10658 734..878 +
1622815285.743347-CDS-L-elsbetiae_contig10658:1256..12791622815285.743347-CDS-L-elsbetiae_contig10658:1256..1279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10658 1257..1279 +
1691682817.3084893-CDS-L-elsbetiae_contig10658:1256..12791691682817.3084893-CDS-L-elsbetiae_contig10658:1256..1279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10658 1257..1279 +
1622815285.754273-CDS-L-elsbetiae_contig10658:1610..17181622815285.754273-CDS-L-elsbetiae_contig10658:1610..1718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10658 1611..1718 +
1691682817.3174787-CDS-L-elsbetiae_contig10658:1610..17181691682817.3174787-CDS-L-elsbetiae_contig10658:1610..1718Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10658 1611..1718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10658.625.1

>prot_L-elsbetiae_contig10658.625.1 ID=prot_L-elsbetiae_contig10658.625.1|Name=mRNA_L-elsbetiae_contig10658.625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MGVFAAGRKISSSPDQGSASQKSGKKTAAARITAVLAALPLSKLKIVVVV
WQISNAFAEVTNVPFPPVYNKFLSITGVFSFDLGWTLSAACL
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mRNA from alignment at L-elsbetiae_contig10658:734..1718+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10658.625.1 ID=mRNA_L-elsbetiae_contig10658.625.1|Name=mRNA_L-elsbetiae_contig10658.625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=985bp|location=Sequence derived from alignment at L-elsbetiae_contig10658:734..1718+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGTTTTCGCTGCCGGTAGAAAGATCTCGTCTTCGCCCGACCAGGG
GTCGGCCAGCCAGAAGAGCGGCAAGAAAACGGCCGCTGCCAGGATCACGG
CCGTGTTGGCGGCGCTCCCACTTTCCAAGCTCAAAATCGTCGTAGGTGAG
AAGTGAACTCCTTGTCTCTGTTTTCGCTCAAATACTATTGAGAAGATCTT
CCTCGCCGAAACGTTTCTGCTGTACATACAAGCGTTTTTGCGGGCGAGTG
GCGTAGCCTCAGTCGTCCAGAAAGGTTTTATCGCGAACATGCGAAGCAGA
AAGGTAGAAAGAGCATTGTGCCCCCTTCTCGTCAGCATCCCAACTGCTGA
TATTCAGACGTGTTTCTCTGTCTACGTTTCTCTCAGTCTCTCACTTTTTC
GAATTTATCATTCCATGTTCCCACGTATTTATTCATGCTTGTTCCATCTC
CAATGCTGTCCCCCCGTCCCATCGTCACCTTTTGTTCCCATTCCATTTGT
CCCACATCCCTGCGGGAACACAGTGGTGTGGCAAATCTCAAACGCGGTGA
GCAAATAGACGCTTCGGTCTAGAAAACAGAGTAGGACGTGACGTAATACG
AAGTACCATATATAGGAGTATGTAGAAACCGTACCACAAACAAAATGGCA
CATGTTGACTGCCTGTAATGACACACCAGTACATGCGTGAAAAGCCGCTT
TTAGTAGTACATGCGGACTAAAATGGCTGAACGCACCGTGACGCGCTACA
TATATGGGATGGAAGCTCGTTCCACGGAACACACTGCGACTTTTGTTTCT
CCCGTGACCGCGACTGTTTGACGCATCGTGCCTTCACCCGCCGTGCCTTG
AAATCCAATTTGATTCACGCCTCGCAGTTCGCAGAGGTCACCAACGTTCC
TTTCCCCCCCGTGTACAACAAGTTCCTGTCCATCACCGGGGTGTTTTCCT
TTGACCTGGGGTGGACGCTGTCGGCAGCTTGCCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10658:734..1718+

>mRNA_L-elsbetiae_contig10658.625.1 ID=mRNA_L-elsbetiae_contig10658.625.1|Name=mRNA_L-elsbetiae_contig10658.625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig10658:734..1718+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGTTTTCGCTGCCGGTAGAAAGATCTCGTCTTCGCCCGACCAGGG
GTCGGCCAGCCAGAAGAGCGGCAAGAAAACGGCCGCTGCCAGGATCACGG
CCGTGTTGGCGGCGCTCCCACTTTCCAAGCTCAAAATCGTCGTAGATGGG
AGTTTTCGCTGCCGGTAGAAAGATCTCGTCTTCGCCCGACCAGGGGTCGG
CCAGCCAGAAGAGCGGCAAGAAAACGGCCGCTGCCAGGATCACGGCCGTG
TTGGCGGCGCTCCCACTTTCCAAGCTCAAAATCGTCGTAGTGGTGTGGCA
AATCTCAAACGCGTGGTGTGGCAAATCTCAAACGCGTTCGCAGAGGTCAC
CAACGTTCCTTTCCCCCCCGTGTACAACAAGTTCCTGTCCATCACCGGGG
TGTTTTCCTTTGACCTGGGGTGGACGCTGTCGGCAGCTTGCCTCTTCGCA
GAGGTCACCAACGTTCCTTTCCCCCCCGTGTACAACAAGTTCCTGTCCAT
CACCGGGGTGTTTTCCTTTGACCTGGGGTGGACGCTGTCGGCAGCTTGCC
TC
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