mRNA_L-elsbetiae_contig10653.622.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10653.622.1
Unique NamemRNA_L-elsbetiae_contig10653.622.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10653.622.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 2.790e-42
Identity = 77/110 (70.00%), Postives = 89/110 (80.91%), Query Frame = 1 
Query:    1 LSPALLRRLRSWTLASLAAPGAAWELGIAPLMKIVAKLQAGVRADIATGDKQTISALVRMGLLTANLDSPMHSSWLNTKYSNASTERPCQACKVKKSDLGDPNYNVKRNA 330
            LSPALLRRLRSW LA+L  PGAAWEL + PLMKI+  LQ G +A+IA GDKQTI+ALVRMGLLTANLDSPMHS W N K+ NA TER CQAC V + DLG+P Y++ +NA
Sbjct:   64 LSPALLRRLRSWHLATLGLPGAAWELDVLPLMKIIRLLQNGCKAEIAVGDKQTITALVRMGLLTANLDSPMHSLWTNQKHHNAKTERACQACTVPRKDLGNPRYDIVKNA 173
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BLAST of mRNA_L-elsbetiae_contig10653.622.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 4.180e-24
Identity = 48/79 (60.76%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:   94 MKIVAKLQAGVRADIATGDKQTISALVRMGLLTANLDSPMHSSWLNTKYSNASTERPCQACKVKKSDLGDPNYNVKRNA 330
            MKI+ +LQ G +A+ + GDKQT++ALVR+GLLTANLDSP+HS W N K+ NA TER CQAC V + DLG+P Y++ +NA
Sbjct:    1 MKIIRRLQNGCKAEFSIGDKQTVTALVRLGLLTANLDSPLHSLWTNQKHHNAKTERACQACVVPRRDLGNPKYDIVKNA 79
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BLAST of mRNA_L-elsbetiae_contig10653.622.1 vs. uniprot
Match: A0A6H5JXS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.660e-13
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 LSPALLRRLRSWTLASLAAPGAAWELGIAPLMKIVAKLQAGVRADIATGDKQTIS 165
            LSP LLRRLRSW LA+L  PGAAWEL I PLM+I+  LQ G + +I+ GDKQT++
Sbjct:   86 LSPTLLRRLRSWYLATLGLPGAAWELDILPLMEIIRWLQNGCKTEISIGDKQTVT 140
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BLAST of mRNA_L-elsbetiae_contig10653.622.1 vs. uniprot
Match: A0A6H5KPX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX4_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.260e-13
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:  151 KQTISALVRMGLLTANLDSPMHSSWLNTKYSNASTERPCQACKVKKSDLGDPNYNVKRNA 330
            +  + ALVR+GLLTANLDSPMHS W N K+ NA T   CQAC V + DLG+P Y++ +NA
Sbjct:   17 QDNVEALVRLGLLTANLDSPMHSLWANQKHHNAKTT--CQACVVPRRDLGNPKYDIVKNA 74
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BLAST of mRNA_L-elsbetiae_contig10653.622.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.970e-10
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    1 LSPALLRRLRSWTLASLAAPGAAWELGIAPLMKIVAKLQAGVRADIATGDKQTISALVRMGLLTANLD 204
            +SP LLRR R W LA+L  PGAAWEL I PLMKI+ +LQ G +A+I+ G K T++    MG +   LD
Sbjct:  550 MSPTLLRRPRPWYLATLGLPGAAWELDILPLMKIIRRLQNGCKAEISVGTKLTVTI---MGFVMDALD 614
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10653.622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FZI4_ECTSI2.790e-4270.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWW9_ECTSI4.180e-2460.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXS6_9PHAE3.660e-1363.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPX4_9PHAE4.260e-1358.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LGI1_9PHAE2.970e-1052.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10653contigL-elsbetiae_contig10653:2613..3181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size332
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815285.546987-CDS-L-elsbetiae_contig10653:2612..27771622815285.546987-CDS-L-elsbetiae_contig10653:2612..2777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10653 2613..2777 +
1691682817.1868982-CDS-L-elsbetiae_contig10653:2612..27771691682817.1868982-CDS-L-elsbetiae_contig10653:2612..2777Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10653 2613..2777 +
1622815285.5619671-CDS-L-elsbetiae_contig10653:3016..31811622815285.5619671-CDS-L-elsbetiae_contig10653:3016..3181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10653 3017..3181 +
1691682817.1953485-CDS-L-elsbetiae_contig10653:3016..31811691682817.1953485-CDS-L-elsbetiae_contig10653:3016..3181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10653 3017..3181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10653.622.1prot_L-elsbetiae_contig10653.622.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10653 2613..3181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10653.622.1

>prot_L-elsbetiae_contig10653.622.1 ID=prot_L-elsbetiae_contig10653.622.1|Name=mRNA_L-elsbetiae_contig10653.622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
LSPALLRRLRSWTLASLAAPGAAWELGIAPLMKIVAKLQAGVRADIATGD
KQTISALVRMGLLTANLDSPMHSSWLNTKYSNASTERPCQACKVKKSDLG
DPNYNVKRNA
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mRNA from alignment at L-elsbetiae_contig10653:2613..3181+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10653.622.1 ID=mRNA_L-elsbetiae_contig10653.622.1|Name=mRNA_L-elsbetiae_contig10653.622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=569bp|location=Sequence derived from alignment at L-elsbetiae_contig10653:2613..3181+ (Laminarionema elsbetiae ELsaHSoW15)
CTTTCCCCCGCTCTTCTCCGTCGTCTTCGCTCGTGGACGCTCGCCTCGCT
AGCCGCGCCTGGAGCAGCTTGGGAGCTTGGTATTGCCCCGTTGATGAAGA
TCGTCGCTAAGCTCCAGGCCGGAGTCAGAGCAGACATCGCTACCGGGGAC
AAGCAGACAATTTCGGTACGTATTTGGTTGGTATGGGGTTGGTATGTGCG
GTGAGCAGACATGGAATGTATGTGCCTCAGAGAGCGGCCCCGCCGTCATG
TTCGGTACTGCCGAGTCTGAAACCGGCTCCCGTGAATTTTTTAGCCCCTG
GTGGTCGAGTCTGCTTGTCTTTTTAAGGAGAATGTTGCTACGCGTGCACC
ACTCGTCAAACGACTTACATTTCCTGTCGCGACCCCTACGATATTCCTCT
GCAGGCATTGGTGAGGATGGGATTACTCACGGCCAACTTGGACAGCCCAA
TGCACAGCTCTTGGTTAAACACGAAGTACAGCAACGCAAGCACTGAGCGT
CCATGCCAAGCCTGCAAGGTGAAGAAAAGCGACCTGGGCGACCCCAACTA
CAACGTCAAGAGAAACGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10653:2613..3181+

>mRNA_L-elsbetiae_contig10653.622.1 ID=mRNA_L-elsbetiae_contig10653.622.1|Name=mRNA_L-elsbetiae_contig10653.622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig10653:2613..3181+ (Laminarionema elsbetiae ELsaHSoW15)
CTTTCCCCCGCTCTTCTCCGTCGTCTTCGCTCGTGGACGCTCGCCTCGCT
AGCCGCGCCTGGAGCAGCTTGGGAGCTTGGTATTGCCCCGTTGATGAAGA
TCGTCGCTAAGCTCCAGGCCGGAGTCAGAGCAGACATCGCTACCGGGGAC
AAGCAGACAATTTCGCTTTCCCCCGCTCTTCTCCGTCGTCTTCGCTCGTG
GACGCTCGCCTCGCTAGCCGCGCCTGGAGCAGCTTGGGAGCTTGGTATTG
CCCCGTTGATGAAGATCGTCGCTAAGCTCCAGGCCGGAGTCAGAGCAGAC
ATCGCTACCGGGGACAAGCAGACAATTTCGGCATTGGTGAGGATGGGATT
ACTCACGGCCAACTTGGACAGCCCAATGCACAGCTCTTGGTTAAACACGA
AGTACAGCAACGCAAGCACTGAGCGTCCATGCCAAGCCTGCAAGGTGAAG
AAAAGCGACCTGGGCGACCCCAACTACAACGTCAAGAGAAACGCGGCATT
GGTGAGGATGGGATTACTCACGGCCAACTTGGACAGCCCAATGCACAGCT
CTTGGTTAAACACGAAGTACAGCAACGCAAGCACTGAGCGTCCATGCCAA
GCCTGCAAGGTGAAGAAAAGCGACCTGGGCGACCCCAACTACAACGTCAA
GAGAAACGCG
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