mRNA_L-elsbetiae_contig10653.621.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10653.621.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.860e-31 Identity = 64/132 (48.48%), Postives = 85/132 (64.39%), Query Frame = 1 Query: 1 MGADFRAKREREPALEHVWELTNAPVEIRVGAVEGLCTVLLPGVSFGP---DPPPNTFVGDGFMEVSSRTGKYRRVLTPWRVSGHHGWFYDRRCRLSNVNTASLPVFSAGLAVSPDGFNFLSMAGKKYSVNA 387 +G F KR RE E +WELTN P+EIRVGA+ G C+VL+PG + P D P + G+GF+E RT + R + PW G+HG F+D+R + N A LPV SAG+A S D FN+ S++G+KYSVNA Sbjct: 412 VGHSFATKRRREEKYEQLWELTNDPLEIRVGAMSGRCSVLVPGDTSEPSDGDAVP-AYDGEGFVEQIPRTNELRLAMAPWTKQGYHGRFFDQRASGVHKNLAGLPVISAGIACSSDDFNYFSLSGRKYSVNA 542
BLAST of mRNA_L-elsbetiae_contig10653.621.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 4.120e-15 Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 Query: 220 LTPWRVSGHHGWFYDRRCRLSNVNTASLPVFSAGLAVSPDGFNFLSMAGKKYSVNA 387 +TPWR G+HGWF+DRR + N LPVFS GLA S D FN+ S++GK+YSVNA Sbjct: 1 MTPWRQQGYHGWFFDRRASGVHANLTGLPVFSTGLACSSDAFNYFSLSGKRYSVNA 56 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10653.621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10653.621.1 >prot_L-elsbetiae_contig10653.621.1 ID=prot_L-elsbetiae_contig10653.621.1|Name=mRNA_L-elsbetiae_contig10653.621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp MGADFRAKREREPALEHVWELTNAPVEIRVGAVEGLCTVLLPGVSFGPDPback to top mRNA from alignment at L-elsbetiae_contig10653:2205..2591+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10653.621.1 ID=mRNA_L-elsbetiae_contig10653.621.1|Name=mRNA_L-elsbetiae_contig10653.621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=387bp|location=Sequence derived from alignment at L-elsbetiae_contig10653:2205..2591+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10653:2205..2591+ >mRNA_L-elsbetiae_contig10653.621.1 ID=mRNA_L-elsbetiae_contig10653.621.1|Name=mRNA_L-elsbetiae_contig10653.621.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig10653:2205..2591+ (Laminarionema elsbetiae ELsaHSoW15)back to top |