mRNA_L-elsbetiae_contig10650.617.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10650.617.1
Unique NamemRNA_L-elsbetiae_contig10650.617.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10650.617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10650contigL-elsbetiae_contig10650:2720..4824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_004640.4
Exons2
Model size250
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815285.2583635-CDS-L-elsbetiae_contig10650:2719..28921622815285.2583635-CDS-L-elsbetiae_contig10650:2719..2892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10650 2720..2892 +
1691682817.054782-CDS-L-elsbetiae_contig10650:2719..28921691682817.054782-CDS-L-elsbetiae_contig10650:2719..2892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10650 2720..2892 +
1622815285.2683685-CDS-L-elsbetiae_contig10650:4749..48221622815285.2683685-CDS-L-elsbetiae_contig10650:4749..4822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10650 4750..4822 +
1691682817.0631318-CDS-L-elsbetiae_contig10650:4749..48221691682817.0631318-CDS-L-elsbetiae_contig10650:4749..4822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10650 4750..4822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10650.617.1prot_L-elsbetiae_contig10650.617.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10650 2720..4822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10650.617.1

>prot_L-elsbetiae_contig10650.617.1 ID=prot_L-elsbetiae_contig10650.617.1|Name=mRNA_L-elsbetiae_contig10650.617.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
NCSSKRTGRVVSSRTTSGYQSRAAITQDLLPAVVVSRLQYTRDMSSTLIQ
RRVAAVASPRSPLAAATARRHLHRNQLDVHHY
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mRNA from alignment at L-elsbetiae_contig10650:2720..4824+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10650.617.1 ID=mRNA_L-elsbetiae_contig10650.617.1|Name=mRNA_L-elsbetiae_contig10650.617.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2105bp|location=Sequence derived from alignment at L-elsbetiae_contig10650:2720..4824+ (Laminarionema elsbetiae ELsaHSoW15)
AACTGCAGCAGCAAGCGTACAGGTCGGGTAGTTTCTTCTCGGACAACATC
AGGCTACCAGAGCAGAGCAGCAATCACTCAAGATCTCCTACCTGCTGTCG
TAGTATCTAGACTACAATACACCCGTGACATGAGTTCGACTCTAATCCAA
CGAAGGGTAGCCGCTGTCGCTAGGTGAGAAGGGATTGGAAGAGCAGACGG
ACACGAAATATTTCCTAGCACCGCCCTTGCATGAAGACTCCCGCTAGCAA
ACACTAGAGATAACGGCTGCAGGTACCGGTGCTACTGCGTGAGGCATAGC
AGCATAAACCGATCACATGTGGAGAGGCTTGCTCAGTCAGGCCGCGCGAG
GAAGAACGGCCCTGCTGGTATTGTAGTGTCTGCTGGCTTTGTGTGGCACG
TTTGCCCGTACAACAATTTCTCCTTCGAAACCACGACGATCGTTTTTTGC
GTTGTACACCATAACACTGGTAGCAGTATTAACCCCGTAGCACGAACTCC
GTGTGAGCGCATTGCATCCGCGGGTGTTTCGACTTTTTCTTTGCTGGAAC
TTGCTTGTTGTGTATCTAGTCTAGATTACACATGTCGTCCACGATGCGTG
TACATCGACAAAAGTAATGTCGGACCCAATCCACCCGATGCGGACCCACG
CGTGCCTTAGCCCCGCAAACTCCCCACACAGTAGTGCACAAGAGCAACAC
CCAACTACATTATAGGGTTTGGTGTCTTGGGGTTTGCTCGCAAATGTCCT
ACGTACATACCCTTTGATCTTGTTGTTGTGGTGTTGTTGTTGTTGTTGCC
GTCTTCACATTAAATCCGCCCCTTCTCTCTATTTGTGTATCCAATTTCCC
CGTGAGTCCGTAATCCAGCACTGACGCGGTCGATTCCTGTGGTCACAAGA
TAACTTATCCTGAAAAGGGTATACTGAAAAACTGAAACATGAAATGGGCC
CGAAGGGTCTGCAAAGCACAAAAACTCAAAAGATCAGACATAGATAGTCT
GGAGCCGTCCACTCCTTGAACGCTATGTGAGGTAATAACAAATCAGGAAA
AGCCATTATCACCAACCGAGGGGACACACCCCCTGGTTCTCTCTTGGTAC
CCCAACAATGCCGGGGTGTTCCGCGCCGGATTGTCGCCGGTCAGGCCCAC
CACTCCAGTCCTCCCCGCCGATTATGCGGCACACATGATACAAGCAAGAG
AGGAAAAATGTCATCGGACAATAAATTAGCCGATCTGCAGCCGCTAAAAA
CCAAGACACGCGCACAACTTCTGGTTTGAATGCAACTATGCTTCAACGAT
AAGTACCTGCCGAACACAGCATTCCCAGATGCTGGTGCATGCACCTGCCG
GGAAATGTAGGAGACCAATAGGCGCACTTGCGTGCACGTCGTCTGTCATT
GGAGGAGGCAGCTAGAGCAAATAAAACCGGTGCTGAGTTTTTCGTCGTCT
GAGTCAGAAAACACCACCACCGGTAGCTTTTATATATTCTCGAAGAAGTT
TCGGCTGCGTACAAACCCAACGAAATGTTGCTGTGGGTATCACCACAAAG
AGATGATGTACAAAAGAGAGAACACGTAGTCACCGGTTGTTGATCATCGA
CGTTTCCCCGGAGATCGAGAGTTCGCGAGGAACGCGACAGGTATCGAAGC
TGCTGTTTTATCCTGCCATGCGCTTTGGGTTGCACACCACCACTGTCAAT
GTGCTCGTGTGGAATGCTTCCCGCAATTCTGGGTCCAACGTACCAACCAT
TGGAAACAACTAACAGAACTTCGTCATTTTCGTCACAAAAAACTGACCTG
TAGCCCACTGCCCGCTTCCTACGGGGCACCTGGGAGAACAAGACGTACAC
AGCTTTAATACGCTGTTATCGTGCGTGTCCTGGTTGGATTAGTGGAAAAG
TGGTTTTAGGCTCGAGGCTTGTCTGCAATACTTTCCTATCGTCGGACTCT
TAAAATCACTACTCCTCCTTCGCCTTTTGTTACGCTCCATATCGGTGATG
GTACGCGCACCCGTGCGGGTGCTGGAACAGCCCACGGTCGCCCCTTGCTG
CGGCTACCGCTCGGCGACACCTCCATCGCAACCAGCTGGACGTTCATCAC
TATCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10650:2720..4824+

>mRNA_L-elsbetiae_contig10650.617.1 ID=mRNA_L-elsbetiae_contig10650.617.1|Name=mRNA_L-elsbetiae_contig10650.617.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig10650:2720..4824+ (Laminarionema elsbetiae ELsaHSoW15)
AACTGCAGCAGCAAGCGTACAGGTCGGGTAGTTTCTTCTCGGACAACATC
AGGCTACCAGAGCAGAGCAGCAATCACTCAAGATCTCCTACCTGCTGTCG
TAGTATCTAGACTACAATACACCCGTGACATGAGTTCGACTCTAATCCAA
CGAAGGGTAGCCGCTGTCGCTAGAACTGCAGCAGCAAGCGTACAGGTCGG
GTAGTTTCTTCTCGGACAACATCAGGCTACCAGAGCAGAGCAGCAATCAC
TCAAGATCTCCTACCTGCTGTCGTAGTATCTAGACTACAATACACCCGTG
ACATGAGTTCGACTCTAATCCAACGAAGGGTAGCCGCTGTCGCTAGCCCA
CGGTCGCCCCTTGCTGCGGCTACCGCTCGGCGACACCTCCATCGCAACCA
GCTGGACGTTCATCACTATCCCACGGTCGCCCCTTGCTGCGGCTACCGCT
CGGCGACACCTCCATCGCAACCAGCTGGACGTTCATCACTAT
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