mRNA_L-elsbetiae_contig1065.614.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1065.614.1
Unique NamemRNA_L-elsbetiae_contig1065.614.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1065.614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1065contigL-elsbetiae_contig1065:2462..3092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size631
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1065.614.1prot_L-elsbetiae_contig1065.614.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1065 2685..3038 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815284.973418-UTR-L-elsbetiae_contig1065:2461..26841622815284.973418-UTR-L-elsbetiae_contig1065:2461..2684Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1065 2462..2684 +
1691682816.88667-UTR-L-elsbetiae_contig1065:2461..26841691682816.88667-UTR-L-elsbetiae_contig1065:2461..2684Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1065 2462..2684 +
1622815284.9958634-UTR-L-elsbetiae_contig1065:3038..30921622815284.9958634-UTR-L-elsbetiae_contig1065:3038..3092Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1065 3039..3092 +
1691682816.9044342-UTR-L-elsbetiae_contig1065:3038..30921691682816.9044342-UTR-L-elsbetiae_contig1065:3038..3092Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1065 3039..3092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815284.9866748-CDS-L-elsbetiae_contig1065:2684..30381622815284.9866748-CDS-L-elsbetiae_contig1065:2684..3038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1065 2685..3038 +
1691682816.8950984-CDS-L-elsbetiae_contig1065:2684..30381691682816.8950984-CDS-L-elsbetiae_contig1065:2684..3038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1065 2685..3038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1065.614.1

>prot_L-elsbetiae_contig1065.614.1 ID=prot_L-elsbetiae_contig1065.614.1|Name=mRNA_L-elsbetiae_contig1065.614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MCDVGFSDLHLFRGCAPKRITRGMSHPKQGWRISPNRHFPCPCPPPSLPP
SSHRFFCAVRAPQLPPNFDNAHNGACSPTPTDRWLTWVFGVVWCARWGGC
RATVATTESRTALPAET*
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mRNA from alignment at L-elsbetiae_contig1065:2462..3092+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1065.614.1 ID=mRNA_L-elsbetiae_contig1065.614.1|Name=mRNA_L-elsbetiae_contig1065.614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=631bp|location=Sequence derived from alignment at L-elsbetiae_contig1065:2462..3092+ (Laminarionema elsbetiae ELsaHSoW15)
AGCATGGAGGCGAGCATGAACGAGATGCGACAGCAGGTAATAGAAGTGTG
TATTTATGCAGTAAATAGCGAGGGAGAGAGGGAGAGCAAAGGCAACGTGC
GAGGGAGGTGCAAGCATTCAAACTGTGTTCGCGGCGCGCGTTCTGCAAAA
GGGGGGAAAGCAACAGCTGCGGCTGGAAAAAAAATCGACACTAACGTCCC
AAGTGAGGGCGAGGGCGATAATCATGTGTGATGTGGGATTTTCCGATCTG
CACCTCTTCCGGGGCTGTGCACCGAAGCGCATAACCAGAGGTATGTCTCA
TCCAAAGCAAGGCTGGCGTATTTCGCCTAACCGCCATTTTCCCTGTCCCT
GTCCCCCTCCCTCCCTTCCTCCCTCGTCGCATCGCTTTTTTTGCGCTGTA
CGTGCCCCCCAACTCCCCCCGAATTTCGACAACGCCCACAATGGCGCTTG
TTCGCCCACGCCGACGGATCGGTGGCTGACATGGGTGTTCGGTGTTGTGT
GGTGCGCGCGTTGGGGTGGGTGTCGCGCCACGGTGGCCACAACCGAGAGC
AGAACAGCGCTTCCAGCGGAAACCTGAGCACTCGAAGCGACCCGTCTTTT
TTCCGCACTCTCAGCGAGCGATAGAGAGACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1065:2462..3092+

>mRNA_L-elsbetiae_contig1065.614.1 ID=mRNA_L-elsbetiae_contig1065.614.1|Name=mRNA_L-elsbetiae_contig1065.614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig1065:2462..3092+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGATGTGGGATTTTCCGATCTGCACCTCTTCCGGGGCTGTGCACC
GAAGCGCATAACCAGAGGTATGTCTCATCCAAAGCAAGGCTGGCGTATTT
CGCCTAACCGCCATTTTCCCTGTCCCTGTCCCCCTCCCTCCCTTCCTCCC
TCGTCGCATCGCTTTTTTTGCGCTGTACGTGCCCCCCAACTCCCCCCGAA
TTTCGACAACGCCCACAATGGCGCTTGTTCGCCCACGCCGACGGATCGGT
GGCTGACATGGGTGTTCGGTGTTGTGTGGTGCGCGCGTTGGGGTGGGTGT
CGCGCCACGGTGGCCACAACCGAGAGCAGAACAGCGCTTCCAGCGGAAAC
CTGAATGTGTGATGTGGGATTTTCCGATCTGCACCTCTTCCGGGGCTGTG
CACCGAAGCGCATAACCAGAGGTATGTCTCATCCAAAGCAAGGCTGGCGT
ATTTCGCCTAACCGCCATTTTCCCTGTCCCTGTCCCCCTCCCTCCCTTCC
TCCCTCGTCGCATCGCTTTTTTTGCGCTGTACGTGCCCCCCAACTCCCCC
CGAATTTCGACAACGCCCACAATGGCGCTTGTTCGCCCACGCCGACGGAT
CGGTGGCTGACATGGGTGTTCGGTGTTGTGTGGTGCGCGCGTTGGGGTGG
GTGTCGCGCCACGGTGGCCACAACCGAGAGCAGAACAGCGCTTCCAGCGG
AAACCTGA
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