mRNA_L-elsbetiae_contig1063.600.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1063.600.1
Unique NamemRNA_L-elsbetiae_contig1063.600.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1063.600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1063contigL-elsbetiae_contig1063:13426..14205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size782
Cds size780
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815283.7518568-CDS-L-elsbetiae_contig1063:13425..142051622815283.7518568-CDS-L-elsbetiae_contig1063:13425..14205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1063 13426..14205 +
1691682816.1492527-CDS-L-elsbetiae_contig1063:13425..142051691682816.1492527-CDS-L-elsbetiae_contig1063:13425..14205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1063 13426..14205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1063.600.1prot_L-elsbetiae_contig1063.600.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1063 13426..14205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1063.600.1

>prot_L-elsbetiae_contig1063.600.1 ID=prot_L-elsbetiae_contig1063.600.1|Name=mRNA_L-elsbetiae_contig1063.600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=260bp
AHEAETASAPIVPHSLLNDIQDIKAMVQALAAGAAGAQAPAPQTGPEPMA
ATPTVSAPEARGRIEQTPHDHQPKPPDITRSPRSGMASPHTSSPTGRRIS
LPIAPHTPRESTSPSRGTRSDCDDAPSSDRTGEHNVSERGQAVEQKPQVP
HVPESTEGERRNPAPADGPNTLMLSSIGDRDGEDKKERRSPSAPTQDGSE
EGGAIGAERGDNHEPLRLDTTGAGEDEGKYKGSTQTIQPIAKSSDSTGAA
AEESPSPSSE
back to top

mRNA from alignment at L-elsbetiae_contig1063:13426..14205+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1063.600.1 ID=mRNA_L-elsbetiae_contig1063.600.1|Name=mRNA_L-elsbetiae_contig1063.600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig1063:13426..14205+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCATGAAGCAGAGACGGCGTCCGCACCGATAGTGCCGCACTCTCTTCT
GAACGATATCCAAGACATTAAGGCCATGGTACAAGCCCTAGCCGCTGGAG
CAGCAGGAGCTCAAGCCCCAGCACCTCAGACCGGTCCAGAACCGATGGCT
GCCACACCAACTGTTTCCGCACCTGAGGCACGTGGAAGAATAGAACAAAC
TCCCCATGACCATCAGCCTAAGCCGCCGGACATCACCCGTAGCCCAAGAT
CCGGGATGGCCTCTCCGCACACGAGCTCTCCAACTGGGCGACGCATCTCC
TTGCCCATTGCCCCCCACACCCCCCGAGAGAGTACGTCTCCATCAAGAGG
CACGCGTTCGGATTGTGATGATGCACCAAGTTCGGACAGGACAGGCGAAC
ACAATGTTAGTGAACGTGGGCAGGCGGTGGAGCAGAAACCACAGGTCCCA
CATGTCCCAGAGAGCACGGAGGGGGAGAGGAGAAACCCAGCGCCCGCTGA
CGGTCCCAATACCCTTATGTTGTCATCTATAGGAGACAGAGATGGGGAAG
ATAAGAAGGAGCGAAGATCTCCATCAGCACCTACTCAGGATGGCAGCGAA
GAAGGGGGGGCGATAGGCGCAGAGCGGGGCGATAATCACGAACCATTACG
CCTTGATACCACCGGTGCCGGCGAGGACGAGGGCAAATACAAGGGGTCGA
CGCAGACCATCCAGCCCATTGCGAAAAGCAGTGACAGTACTGGCGCGGCC
GCAGAGGAGTCTCCCTCTCCCTCTTCAGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1063:13426..14205+

>mRNA_L-elsbetiae_contig1063.600.1 ID=mRNA_L-elsbetiae_contig1063.600.1|Name=mRNA_L-elsbetiae_contig1063.600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1560bp|location=Sequence derived from alignment at L-elsbetiae_contig1063:13426..14205+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCATGAAGCAGAGACGGCGTCCGCACCGATAGTGCCGCACTCTCTTCT
GAACGATATCCAAGACATTAAGGCCATGGTACAAGCCCTAGCCGCTGGAG
CAGCAGGAGCTCAAGCCCCAGCACCTCAGACCGGTCCAGAACCGATGGCT
GCCACACCAACTGTTTCCGCACCTGAGGCACGTGGAAGAATAGAACAAAC
TCCCCATGACCATCAGCCTAAGCCGCCGGACATCACCCGTAGCCCAAGAT
CCGGGATGGCCTCTCCGCACACGAGCTCTCCAACTGGGCGACGCATCTCC
TTGCCCATTGCCCCCCACACCCCCCGAGAGAGTACGTCTCCATCAAGAGG
CACGCGTTCGGATTGTGATGATGCACCAAGTTCGGACAGGACAGGCGAAC
ACAATGTTAGTGAACGTGGGCAGGCGGTGGAGCAGAAACCACAGGTCCCA
CATGTCCCAGAGAGCACGGAGGGGGAGAGGAGAAACCCAGCGCCCGCTGA
CGGTCCCAATACCCTTATGTTGTCATCTATAGGAGACAGAGATGGGGAAG
ATAAGAAGGAGCGAAGATCTCCATCAGCACCTACTCAGGATGGCAGCGAA
GAAGGGGGGGCGATAGGCGCAGAGCGGGGCGATAATCACGAACCATTACG
CCTTGATACCACCGGTGCCGGCGAGGACGAGGGCAAATACAAGGGGTCGA
CGCAGACCATCCAGCCCATTGCGAAAAGCAGTGACAGTACTGGCGCGGCC
GCAGAGGAGTCTCCCTCTCCCTCTTCAGAGGCTCATGAAGCAGAGACGGC
GTCCGCACCGATAGTGCCGCACTCTCTTCTGAACGATATCCAAGACATTA
AGGCCATGGTACAAGCCCTAGCCGCTGGAGCAGCAGGAGCTCAAGCCCCA
GCACCTCAGACCGGTCCAGAACCGATGGCTGCCACACCAACTGTTTCCGC
ACCTGAGGCACGTGGAAGAATAGAACAAACTCCCCATGACCATCAGCCTA
AGCCGCCGGACATCACCCGTAGCCCAAGATCCGGGATGGCCTCTCCGCAC
ACGAGCTCTCCAACTGGGCGACGCATCTCCTTGCCCATTGCCCCCCACAC
CCCCCGAGAGAGTACGTCTCCATCAAGAGGCACGCGTTCGGATTGTGATG
ATGCACCAAGTTCGGACAGGACAGGCGAACACAATGTTAGTGAACGTGGG
CAGGCGGTGGAGCAGAAACCACAGGTCCCACATGTCCCAGAGAGCACGGA
GGGGGAGAGGAGAAACCCAGCGCCCGCTGACGGTCCCAATACCCTTATGT
TGTCATCTATAGGAGACAGAGATGGGGAAGATAAGAAGGAGCGAAGATCT
CCATCAGCACCTACTCAGGATGGCAGCGAAGAAGGGGGGGCGATAGGCGC
AGAGCGGGGCGATAATCACGAACCATTACGCCTTGATACCACCGGTGCCG
GCGAGGACGAGGGCAAATACAAGGGGTCGACGCAGACCATCCAGCCCATT
GCGAAAAGCAGTGACAGTACTGGCGCGGCCGCAGAGGAGTCTCCCTCTCC
CTCTTCAGAG
back to top